Wall clock time and date at job start Tue Mar 31 2020 11:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50176 * 2 1 4 4 C 1.53149 * 109.50034 * 239.92451 * 2 1 3 5 5 C 1.53145 * 108.96900 * 169.30086 * 4 2 1 6 6 C 1.51505 * 108.71453 * 49.79642 * 5 4 2 7 7 S 1.75813 * 125.04513 * 163.59939 * 6 5 4 8 8 C 1.75709 * 91.20928 * 180.02562 * 7 6 5 9 9 C 1.47055 * 125.34159 * 179.73301 * 8 7 6 10 10 N 1.31531 * 126.41803 * 180.02562 * 9 8 7 11 11 N 1.28651 * 109.22887 * 180.02562 * 10 9 8 12 12 C 1.30328 * 109.58739 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.15662 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47406 * 89.97657 * 13 12 11 15 15 C 1.50697 * 109.47404 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99764 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47549 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47007 * 120.00766 * 19 17 15 22 22 H 1.48500 * 109.47018 * 240.00191 * 19 17 15 23 23 O 1.34547 * 107.67910 * 359.73576 * 12 11 10 24 24 C 1.35663 * 109.32609 * 0.02562 * 8 7 6 25 25 C 1.35017 * 124.65890 * 343.62441 * 6 5 4 26 26 C 1.52331 * 122.80704 * 359.97438 * 25 6 5 27 27 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47023 * 300.07206 * 1 2 3 29 29 H 1.09000 * 109.46975 * 60.07726 * 1 2 3 30 30 H 1.08996 * 109.55325 * 49.46185 * 4 2 1 31 31 H 1.08991 * 109.64054 * 289.19800 * 4 2 1 32 32 H 1.09000 * 109.59923 * 290.02499 * 5 4 2 33 33 H 1.08996 * 109.59987 * 169.56407 * 5 4 2 34 34 H 1.09005 * 109.46734 * 209.97302 * 13 12 11 35 35 H 1.08993 * 109.47863 * 329.96883 * 13 12 11 36 36 H 1.09005 * 109.46884 * 299.99553 * 14 13 12 37 37 H 1.08998 * 109.47332 * 59.99577 * 14 13 12 38 38 H 0.97001 * 119.99857 * 179.97438 * 18 17 15 39 39 H 1.07997 * 122.37504 * 180.02562 * 24 8 7 40 40 H 1.09002 * 109.58415 * 222.73340 * 26 25 6 41 41 H 1.08997 * 109.69757 * 102.39008 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2493 5 6 3.5488 -0.4879 -1.3790 6 6 4.2057 -0.7993 -0.0497 7 16 5.9262 -1.0728 0.1867 8 6 5.6869 -1.3287 1.9085 9 6 6.7479 -1.6411 2.8776 10 7 6.5929 -1.8370 4.1690 11 7 7.7377 -2.0867 4.7001 12 6 8.6610 -2.0604 3.7805 13 6 10.1333 -2.3024 3.9917 14 6 10.4342 -3.7932 3.8254 15 6 11.9067 -4.0351 4.0360 16 1 12.5625 -3.2082 4.2651 17 6 12.4167 -5.3122 3.9361 18 7 11.6183 -6.3192 3.6565 19 14 14.2420 -5.6119 4.1964 20 1 14.9175 -4.3237 4.4958 21 1 14.4328 -6.5466 5.3345 22 1 14.8268 -6.2038 2.9665 23 8 8.0619 -1.7846 2.6078 24 6 4.3688 -1.1995 2.2026 25 6 3.5486 -0.9067 1.1249 26 6 2.0415 -0.7223 1.2474 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5150 0.8893 29 1 -0.3633 0.5126 -0.8907 30 1 1.5337 -0.3320 -2.1309 31 1 1.8453 -1.7919 -1.1598 32 1 3.7348 0.5530 -1.6437 33 1 3.9561 -1.1418 -2.1501 34 1 10.7040 -1.7325 3.2584 35 1 10.4134 -1.9851 4.9962 36 1 9.8635 -4.3631 4.5587 37 1 10.1543 -4.1105 2.8209 38 1 11.9772 -7.2176 3.5859 39 1 3.9862 -1.3152 3.2059 40 1 1.8170 -0.1271 2.1326 41 1 1.5577 -1.6956 1.3294 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261574461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:40 Heat of formation + Delta-G solvation = 34.851174 kcal Electronic energy + Delta-G solvation = -22731.513182 eV Core-core repulsion = 19317.598588 eV Total energy + Delta-G solvation = -3413.914594 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74316 -39.65394 -36.24223 -35.79080 -34.41712 -32.60884 -32.08377 -30.76512 -28.64596 -26.93927 -25.73965 -24.67654 -23.29802 -22.67369 -22.15057 -20.88937 -20.32766 -18.53821 -17.79540 -17.08660 -16.56962 -16.20471 -15.64722 -15.11040 -14.76504 -14.57746 -14.55004 -14.07180 -13.84985 -13.45189 -13.24372 -13.02164 -12.65095 -12.53288 -12.42551 -12.27931 -12.09085 -11.82482 -11.60240 -11.48222 -11.38238 -11.06157 -11.01616 -10.88901 -10.81197 -10.68081 -10.63833 -10.16010 -10.09124 -9.49862 -9.30036 -8.61727 -8.47629 -8.20872 -6.11303 -4.16396 0.23271 1.17492 1.65300 1.67003 2.38504 2.45151 2.89362 3.26655 3.34213 3.37819 4.07742 4.23983 4.35809 4.39466 4.39845 4.68869 4.71643 4.83680 5.02133 5.07502 5.11280 5.25142 5.27898 5.30550 5.39575 5.42221 5.46709 5.49571 5.58909 5.62551 5.74209 5.74698 5.82409 5.88973 6.00449 6.09539 6.14579 6.18311 6.25235 6.57688 7.45979 7.53495 7.83976 8.18860 8.61072 8.88960 9.48617 10.99996 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.002276 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.957090 B =12297.196123 C =12700.745329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.049 4.049 6 C -0.173 4.173 7 S 0.168 5.832 8 C -0.127 4.127 9 C 0.205 3.795 10 N -0.264 5.264 11 N -0.298 5.298 12 C 0.207 3.793 13 C -0.026 4.026 14 C 0.027 3.973 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.222 6.222 24 C -0.069 4.069 25 C -0.106 4.106 26 C -0.050 4.050 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.153 0.847 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 14.157 -11.439 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.292 4.292 7 S 0.438 5.562 8 C -0.246 4.246 9 C -0.004 4.004 10 N -0.113 5.113 11 N -0.145 5.145 12 C -0.002 4.002 13 C -0.065 4.065 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.102 6.102 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.090 4.090 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.170 0.830 40 H 0.097 0.903 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.546 13.825 -11.248 27.199 hybrid contribution 0.499 -0.320 0.030 0.594 sum -20.047 13.505 -11.219 26.648 Atomic orbital electron populations 1.21829 0.94696 1.02055 1.01891 1.21153 0.95662 0.99892 0.94483 0.90739 1.21652 0.93897 1.01375 0.98008 1.20370 0.95017 1.02180 0.91229 1.25199 0.96169 1.08342 0.99522 1.84389 1.04503 1.67803 0.99541 1.20864 0.92964 1.15455 0.95286 1.23848 0.80986 1.03139 0.92470 1.74760 1.18054 1.15052 1.03455 1.74403 0.94319 1.19023 1.26718 1.29023 1.00323 0.93906 0.76902 1.20806 0.78316 1.03483 1.03882 1.19187 0.97751 0.85944 0.98257 1.21097 0.92437 0.93634 1.49238 0.91935 1.25031 0.98307 0.96086 0.94906 1.69982 1.35079 0.99744 1.48092 0.86431 0.84734 0.78386 0.77834 1.19543 1.20863 1.20928 1.84926 1.19894 1.67898 1.37469 1.20384 0.89885 0.99018 1.01053 1.19400 0.97049 1.04339 0.90958 1.20609 0.88733 1.01222 0.98390 0.92476 0.92455 0.92528 0.90941 0.91220 0.89902 0.90108 0.89388 0.87720 0.95330 0.95996 0.92757 0.82983 0.90294 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.17 37.15 0.34 -0.35 16 2 C -0.09 -0.55 2.67 -90.57 -0.24 -0.79 16 3 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 4 C -0.11 -0.63 5.24 -26.58 -0.14 -0.77 16 5 C -0.05 -0.33 6.26 -27.41 -0.17 -0.50 16 6 C -0.17 -1.70 6.35 -35.06 -0.22 -1.92 16 7 S 0.17 2.04 23.28 -107.50 -2.50 -0.46 16 8 C -0.13 -1.88 6.43 -36.93 -0.24 -2.11 16 9 C 0.20 3.77 8.24 -14.11 -0.12 3.65 16 10 N -0.26 -5.31 12.23 31.95 0.39 -4.92 16 11 N -0.30 -6.42 12.21 32.59 0.40 -6.02 16 12 C 0.21 4.28 7.72 -12.92 -0.10 4.18 16 13 C -0.03 -0.53 5.78 -27.88 -0.16 -0.69 16 14 C 0.03 0.68 4.95 -27.88 -0.14 0.54 16 15 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 O -0.22 -4.38 10.90 3.34 0.04 -4.34 16 24 C -0.07 -0.86 9.92 -40.38 -0.40 -1.26 16 25 C -0.11 -1.07 5.76 -104.84 -0.60 -1.67 16 26 C -0.05 -0.37 5.43 -27.10 -0.15 -0.51 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 31 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -31.65 359.25 -9.17 -40.82 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.88 Total: -5.55 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.75 Total: -15.31 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.53 Total: -36.72 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.34 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.50 Total: -0.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.65 -9.17 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261574461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.674 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds