Wall clock time and date at job start Tue Mar 31 2020 12:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47069 * 270.00154 * 3 2 1 5 5 H 1.48492 * 109.47302 * 30.00657 * 3 2 1 6 6 H 1.48506 * 109.46829 * 150.00665 * 3 2 1 7 7 C 1.37878 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99459 * 359.97438 * 7 2 1 10 10 O 1.42895 * 110.88910 * 303.87895 * 9 7 2 11 11 C 1.55161 * 110.99940 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.94108 * 206.38702 * 11 9 7 13 13 N 1.47027 * 107.26807 * 22.18752 * 12 11 9 14 14 C 1.34777 * 125.64203 * 181.01974 * 13 12 11 15 15 O 1.21548 * 119.99872 * 180.02562 * 14 13 12 16 16 C 1.47922 * 120.00474 * 0.03205 * 14 13 12 17 17 C 1.39473 * 119.72050 * 179.97438 * 16 14 13 18 18 C 1.38407 * 119.07033 * 179.97438 * 17 16 14 19 19 C 1.38695 * 118.72500 * 359.90029 * 18 17 16 20 20 C 1.39550 * 119.04167 * 0.02896 * 19 18 17 21 21 N 1.31311 * 120.84364 * 0.19896 * 20 19 18 22 22 O 1.35525 * 121.72727 * 180.30390 * 19 18 17 23 23 C 1.42873 * 117.76219 * 342.84527 * 22 19 18 24 24 C 1.53398 * 108.52879 * 49.19474 * 23 22 19 25 25 C 1.50486 * 119.62366 * 179.85422 * 18 17 16 26 26 C 1.47414 * 108.70575 * 1.29225 * 13 12 11 27 27 H 0.96999 * 119.99989 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99814 * 56.11924 * 10 9 7 29 29 H 1.08997 * 110.72110 * 88.02346 * 11 9 7 30 30 H 1.09001 * 110.72069 * 324.74753 * 11 9 7 31 31 H 1.08999 * 109.88053 * 262.77898 * 12 11 9 32 32 H 1.08993 * 110.01606 * 141.68007 * 12 11 9 33 33 H 1.07998 * 120.46267 * 359.95140 * 17 16 14 34 34 H 1.08002 * 119.58130 * 179.85757 * 20 19 18 35 35 H 1.09004 * 109.62106 * 289.48321 * 23 22 19 36 36 H 1.08995 * 109.78643 * 169.00767 * 23 22 19 37 37 H 1.09008 * 109.68932 * 175.59542 * 24 23 22 38 38 H 1.09001 * 109.72315 * 55.03824 * 24 23 22 39 39 H 1.09003 * 109.45986 * 282.48620 * 25 18 17 40 40 H 1.09000 * 109.46140 * 42.43454 * 25 18 17 41 41 H 1.09002 * 110.36686 * 94.47847 * 26 13 12 42 42 H 1.08999 * 110.36604 * 216.80263 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7050 -0.0005 12 6 1.3978 -4.8215 -0.6690 13 7 0.3463 -4.1684 -1.4624 14 6 -0.6003 -4.8008 -2.1838 15 8 -1.4231 -4.1564 -2.8044 16 6 -0.6382 -6.2791 -2.2202 17 6 -1.6207 -6.9274 -2.9683 18 6 -1.6432 -8.3111 -2.9933 19 6 -0.6835 -9.0065 -2.2729 20 6 0.2702 -8.2907 -1.5481 21 7 0.2635 -6.9776 -1.5400 22 8 -0.6452 -10.3612 -2.2595 23 6 -1.8135 -11.0642 -2.6862 24 6 -2.2741 -10.4762 -4.0261 25 6 -2.6999 -9.0235 -3.7937 26 6 0.5029 -2.7074 -1.3434 27 1 -0.4850 0.8400 0.0004 28 1 -0.2773 -1.8356 1.1506 29 1 2.4974 -3.9826 1.0183 30 1 3.1172 -3.4808 -0.5890 31 1 0.9464 -5.4554 0.0942 32 1 2.0346 -5.4209 -1.3194 33 1 -2.3538 -6.3578 -3.5199 34 1 1.0201 -8.8234 -0.9822 35 1 -2.6030 -10.9466 -1.9439 36 1 -1.5827 -12.1222 -2.8106 37 1 -3.1187 -11.0499 -4.4080 38 1 -1.4540 -10.5084 -4.7433 39 1 -3.6433 -9.0043 -3.2480 40 1 -2.8262 -8.5241 -4.7543 41 1 1.0939 -2.3204 -2.1736 42 1 -0.4728 -2.2226 -1.3127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649856495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:09 Heat of formation + Delta-G solvation = -81.307806 kcal Electronic energy + Delta-G solvation = -26780.755549 eV Core-core repulsion = 22919.051052 eV Total energy + Delta-G solvation = -3861.704497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30351 -39.53752 -38.17955 -36.97445 -34.96028 -34.18320 -32.10512 -31.95601 -30.92954 -29.89546 -27.76603 -26.47486 -25.60034 -24.48879 -23.34522 -22.58529 -20.97579 -19.56628 -19.04535 -18.04987 -17.63112 -17.09935 -16.60546 -15.73767 -15.62894 -15.16162 -15.00892 -14.79209 -14.58219 -14.40020 -14.20015 -13.84246 -13.64069 -13.18202 -13.04218 -12.84710 -12.78206 -12.37041 -11.96102 -11.80521 -11.54629 -11.43074 -11.29601 -11.05875 -11.00986 -10.69434 -10.46435 -10.42505 -10.12448 -9.91508 -9.61842 -9.31777 -9.21460 -8.63679 -8.55581 -8.31046 -7.66603 -6.25097 -4.34285 0.73736 1.05933 2.82926 3.07306 3.22963 3.30519 3.33476 3.59882 3.98824 4.15867 4.21064 4.27095 4.29681 4.42346 4.48308 4.75321 4.94113 4.98136 5.02610 5.09426 5.12207 5.29547 5.45214 5.56858 5.63245 5.68451 5.76680 5.92862 5.93567 6.03083 6.14010 6.26515 6.52027 6.64178 6.83741 6.95378 6.97074 7.08682 7.31754 7.40417 7.77842 7.78671 8.05080 8.27465 8.68426 8.74696 9.35418 9.52292 10.82121 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.002921 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.672140 B = 9582.214499 C =10063.387808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.124 4.124 12 C 0.123 3.877 13 N -0.585 5.585 14 C 0.573 3.427 15 O -0.552 6.552 16 C 0.058 3.942 17 C -0.077 4.077 18 C -0.132 4.132 19 C 0.095 3.905 20 C 0.077 3.923 21 N -0.416 5.416 22 O -0.307 6.307 23 C 0.058 3.942 24 C -0.160 4.160 25 C -0.080 4.080 26 C 0.091 3.909 27 H 0.271 0.729 28 H 0.385 0.615 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -21.118 -6.197 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.162 4.162 12 C 0.000 4.000 13 N -0.315 5.315 14 C 0.359 3.641 15 O -0.431 6.431 16 C -0.079 4.079 17 C -0.097 4.097 18 C -0.140 4.140 19 C 0.046 3.954 20 C -0.085 4.085 21 N -0.128 5.128 22 O -0.219 6.219 23 C -0.017 4.017 24 C -0.198 4.198 25 C -0.117 4.117 26 C -0.030 4.030 27 H 0.081 0.919 28 H 0.237 0.763 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.169 -20.863 -5.903 21.912 hybrid contribution -0.763 0.943 -0.786 1.445 sum -3.932 -19.920 -6.689 21.378 Atomic orbital electron populations 1.69574 1.06023 1.27923 1.49996 1.25094 0.95039 0.99784 0.93406 0.86386 0.79785 0.82381 0.78247 1.20443 1.21018 1.19681 1.21525 0.93730 0.90115 1.52022 0.91442 1.19628 0.85773 0.91813 0.81942 1.86078 1.51074 1.52899 1.49235 1.22733 0.97918 0.95228 1.00330 1.22036 0.88865 0.94944 0.94177 1.48567 1.28295 1.09624 1.44981 1.17343 0.81443 0.85072 0.80239 1.90752 1.40039 1.66422 1.45919 1.21233 0.93995 0.94888 0.97778 1.21863 0.97897 0.92891 0.97084 1.20050 0.99252 0.94174 1.00567 1.20013 0.96376 0.83484 0.95505 1.22500 0.98655 0.89002 0.98337 1.67929 1.21863 1.06820 1.16182 1.85951 1.38793 1.14953 1.82177 1.23046 0.86860 0.96284 0.95515 1.22261 1.03022 0.96368 0.98108 1.20483 0.96445 0.94596 1.00164 1.23405 1.02622 0.76269 1.00721 0.91922 0.76304 0.90786 0.90715 0.91362 0.92048 0.83264 0.81402 0.91490 0.87140 0.89329 0.90197 0.89674 0.89191 0.91918 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 10.72 55.43 0.59 -23.58 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.12 8.25 -34.44 -0.28 -14.41 16 8 H 0.07 1.74 7.76 -52.49 -0.41 1.33 16 9 C 0.25 6.21 0.89 -89.50 -0.08 6.13 16 10 O -0.58 -15.42 13.19 -35.23 -0.46 -15.89 16 11 C -0.12 -2.59 6.12 -24.89 -0.15 -2.75 16 12 C 0.12 2.40 5.40 -3.06 -0.02 2.38 16 13 N -0.58 -12.95 3.32 -171.47 -0.57 -13.52 16 14 C 0.57 12.33 7.83 -12.29 -0.10 12.24 16 15 O -0.55 -13.23 16.58 5.32 0.09 -13.14 16 16 C 0.06 1.02 6.72 -83.02 -0.56 0.46 16 17 C -0.08 -1.11 9.30 -39.06 -0.36 -1.47 16 18 C -0.13 -1.55 5.75 -104.50 -0.60 -2.15 16 19 C 0.09 1.12 6.50 -38.92 -0.25 0.87 16 20 C 0.08 1.00 11.12 -17.29 -0.19 0.81 16 21 N -0.42 -6.66 6.82 -9.61 -0.07 -6.72 16 22 O -0.31 -3.08 10.29 -18.27 -0.19 -3.27 16 23 C 0.06 0.37 7.01 37.36 0.26 0.64 16 24 C -0.16 -0.95 6.20 -26.44 -0.16 -1.12 16 25 C -0.08 -0.63 5.90 -27.91 -0.16 -0.80 16 26 C 0.09 2.26 5.65 -2.42 -0.01 2.25 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.38 10.49 6.93 45.56 0.32 10.81 16 29 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.07 1.46 8.01 -51.93 -0.42 1.05 16 31 H 0.07 1.33 7.41 -51.93 -0.38 0.94 16 32 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16 33 H 0.15 2.09 7.64 -52.49 -0.40 1.69 16 34 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.33 8.14 -51.92 -0.42 -0.10 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.57 8.04 -51.93 -0.42 1.16 16 42 H 0.08 2.28 7.64 -51.93 -0.40 1.89 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -31.08 344.05 -8.23 -39.31 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.02 Total: 11.30 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.77 Total: 4.82 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.04 Total: -43.83 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.56 Total: -32.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.08 -8.23 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649856495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.999 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds