Wall clock time and date at job start Tue Mar 31 2020 12:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99712 * 2 1 4 4 H 1.48498 * 109.47069 * 270.00154 * 3 2 1 5 5 H 1.48492 * 109.47302 * 30.00657 * 3 2 1 6 6 H 1.48506 * 109.46829 * 150.00665 * 3 2 1 7 7 C 1.37878 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99459 * 359.97438 * 7 2 1 10 10 O 1.42895 * 110.88910 * 303.87895 * 9 7 2 11 11 C 1.55161 * 110.99940 * 180.02562 * 9 7 2 12 12 C 1.54326 * 102.94108 * 206.38702 * 11 9 7 13 13 N 1.47027 * 107.26807 * 22.18752 * 12 11 9 14 14 C 1.34777 * 125.64203 * 181.01974 * 13 12 11 15 15 O 1.21548 * 119.99872 * 180.02562 * 14 13 12 16 16 C 1.47922 * 120.00474 * 0.03205 * 14 13 12 17 17 C 1.39473 * 119.72050 * 179.97438 * 16 14 13 18 18 C 1.38407 * 119.07033 * 179.97438 * 17 16 14 19 19 C 1.38695 * 118.72500 * 359.90029 * 18 17 16 20 20 C 1.39550 * 119.04167 * 0.02896 * 19 18 17 21 21 N 1.31311 * 120.84364 * 0.19896 * 20 19 18 22 22 O 1.35525 * 121.72727 * 180.30390 * 19 18 17 23 23 C 1.42873 * 117.76219 * 342.84527 * 22 19 18 24 24 C 1.53398 * 108.52879 * 49.19474 * 23 22 19 25 25 C 1.50486 * 119.62366 * 179.85422 * 18 17 16 26 26 C 1.47414 * 108.70575 * 1.29225 * 13 12 11 27 27 H 0.96999 * 119.99989 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99814 * 56.11924 * 10 9 7 29 29 H 1.08997 * 110.72110 * 88.02346 * 11 9 7 30 30 H 1.09001 * 110.72069 * 324.74753 * 11 9 7 31 31 H 1.08999 * 109.88053 * 262.77898 * 12 11 9 32 32 H 1.08993 * 110.01606 * 141.68007 * 12 11 9 33 33 H 1.07998 * 120.46267 * 359.95140 * 17 16 14 34 34 H 1.08002 * 119.58130 * 179.85757 * 20 19 18 35 35 H 1.09004 * 109.62106 * 289.48321 * 23 22 19 36 36 H 1.08995 * 109.78643 * 169.00767 * 23 22 19 37 37 H 1.09008 * 109.68932 * 175.59542 * 24 23 22 38 38 H 1.09001 * 109.72315 * 55.03824 * 24 23 22 39 39 H 1.09003 * 109.45986 * 282.48620 * 25 18 17 40 40 H 1.09000 * 109.46140 * 42.43454 * 25 18 17 41 41 H 1.09002 * 110.36686 * 94.47847 * 26 13 12 42 42 H 1.08999 * 110.36604 * 216.80263 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3522 -2.5685 1.1082 11 6 2.2274 -3.7050 -0.0005 12 6 1.3978 -4.8215 -0.6690 13 7 0.3463 -4.1684 -1.4624 14 6 -0.6003 -4.8008 -2.1838 15 8 -1.4231 -4.1564 -2.8044 16 6 -0.6382 -6.2791 -2.2202 17 6 -1.6207 -6.9274 -2.9683 18 6 -1.6432 -8.3111 -2.9933 19 6 -0.6835 -9.0065 -2.2729 20 6 0.2702 -8.2907 -1.5481 21 7 0.2635 -6.9776 -1.5400 22 8 -0.6452 -10.3612 -2.2595 23 6 -1.8135 -11.0642 -2.6862 24 6 -2.2741 -10.4762 -4.0261 25 6 -2.6999 -9.0235 -3.7937 26 6 0.5029 -2.7074 -1.3434 27 1 -0.4850 0.8400 0.0004 28 1 -0.2773 -1.8356 1.1506 29 1 2.4974 -3.9826 1.0183 30 1 3.1172 -3.4808 -0.5890 31 1 0.9464 -5.4554 0.0942 32 1 2.0346 -5.4209 -1.3194 33 1 -2.3538 -6.3578 -3.5199 34 1 1.0201 -8.8234 -0.9822 35 1 -2.6030 -10.9466 -1.9439 36 1 -1.5827 -12.1222 -2.8106 37 1 -3.1187 -11.0499 -4.4080 38 1 -1.4540 -10.5084 -4.7433 39 1 -3.6433 -9.0043 -3.2480 40 1 -2.8262 -8.5241 -4.7543 41 1 1.0939 -2.3204 -2.1736 42 1 -0.4728 -2.2226 -1.3127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649856495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:08 Heat of formation + Delta-G solvation = -103.207178 kcal Electronic energy + Delta-G solvation = -26781.705177 eV Core-core repulsion = 22919.051052 eV Total energy + Delta-G solvation = -3862.654125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28470 -40.99081 -39.44679 -38.68478 -36.16611 -35.62333 -34.15843 -32.85996 -32.18444 -31.48240 -29.58815 -27.56478 -26.92415 -25.79401 -24.37994 -24.06766 -22.05122 -21.44883 -20.31486 -19.22047 -18.89522 -18.72633 -17.79250 -17.11790 -16.94410 -16.84139 -16.52228 -16.12045 -15.75091 -15.62956 -15.18182 -14.95142 -14.87244 -14.62729 -14.49826 -14.35589 -14.12103 -13.53671 -13.49362 -13.35811 -13.24495 -12.84329 -12.59398 -12.37706 -12.31267 -12.21107 -12.06179 -11.88475 -11.73212 -11.40165 -11.18778 -10.69801 -10.61935 -10.49139 -10.32493 -9.65248 -9.36847 -8.25613 -6.42820 -0.41672 0.06340 1.42891 1.44367 1.54984 1.63042 1.96400 2.15849 2.38979 2.72382 3.00231 3.09902 3.41564 3.43471 3.64392 3.79799 3.87704 3.89276 4.04585 4.15778 4.23524 4.26491 4.42530 4.50618 4.54263 4.65314 4.69230 4.72862 4.83817 4.89042 4.95521 5.01988 5.02590 5.11959 5.15682 5.25058 5.33894 5.42454 5.46526 5.76094 6.03709 6.14916 6.54835 6.63792 6.70218 7.08134 7.29723 7.39082 8.80378 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034531 B = 0.002921 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.672140 B = 9582.214499 C =10063.387808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.118 4.118 12 C 0.134 3.866 13 N -0.594 5.594 14 C 0.566 3.434 15 O -0.591 6.591 16 C 0.025 3.975 17 C -0.077 4.077 18 C -0.129 4.129 19 C 0.111 3.889 20 C 0.074 3.926 21 N -0.433 5.433 22 O -0.309 6.309 23 C 0.047 3.953 24 C -0.154 4.154 25 C -0.083 4.083 26 C 0.104 3.896 27 H 0.271 0.729 28 H 0.377 0.623 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.196 0.804 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -24.220 -6.581 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.156 4.156 12 C 0.012 3.988 13 N -0.324 5.324 14 C 0.355 3.645 15 O -0.473 6.473 16 C -0.111 4.111 17 C -0.098 4.098 18 C -0.137 4.137 19 C 0.062 3.938 20 C -0.089 4.089 21 N -0.145 5.145 22 O -0.221 6.221 23 C -0.027 4.027 24 C -0.191 4.191 25 C -0.120 4.120 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.213 0.787 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.625 -24.004 -6.286 24.952 hybrid contribution -0.997 1.686 -0.696 2.079 sum -3.622 -22.318 -6.982 23.663 Atomic orbital electron populations 1.69691 1.07292 1.28566 1.50382 1.25884 0.95791 1.03025 0.92991 0.85384 0.78697 0.78321 0.78196 1.20198 1.20845 1.18861 1.21831 0.94085 0.91076 1.52292 0.91034 1.19877 0.86158 0.93349 0.81275 1.86067 1.51227 1.52535 1.50081 1.22753 0.97606 0.93752 1.01455 1.22052 0.88234 0.94315 0.94224 1.48635 1.29434 1.08495 1.45819 1.18063 0.80342 0.87092 0.79023 1.90700 1.41297 1.67933 1.47355 1.20649 0.96767 0.92428 1.01234 1.21884 0.97067 0.94266 0.96585 1.20398 1.00002 0.92989 1.00330 1.20043 0.95250 0.84607 0.93922 1.22935 0.99457 0.88067 0.98481 1.67757 1.21872 1.08345 1.16490 1.85967 1.40718 1.13585 1.81809 1.23476 0.85985 0.97319 0.95951 1.22274 1.04059 0.95028 0.97738 1.20654 0.95665 0.95692 1.00001 1.22994 1.00159 0.78180 1.00553 0.91955 0.77244 0.89762 0.89290 0.91121 0.89780 0.83631 0.78698 0.90573 0.84163 0.86262 0.90613 0.88285 0.88479 0.93147 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 10.72 21.45 0.23 -51.13 16 2 C 0.02 1.25 5.30 84.65 0.45 1.70 16 3 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.55 -29.70 8.25 25.60 0.21 -29.49 16 8 H 0.07 3.68 7.76 -2.92 -0.02 3.66 16 9 C 0.23 11.96 0.89 -10.07 -0.01 11.95 16 10 O -0.59 -32.27 13.19 -148.98 -1.97 -34.23 16 11 C -0.12 -4.89 6.12 31.79 0.19 -4.69 16 12 C 0.13 5.21 5.40 86.73 0.47 5.68 16 13 N -0.59 -27.29 3.32 -814.69 -2.71 -30.00 16 14 C 0.57 25.51 7.83 86.81 0.68 26.19 16 15 O -0.59 -30.10 16.58 -3.87 -0.06 -30.17 16 16 C 0.02 0.87 6.72 41.86 0.28 1.15 16 17 C -0.08 -2.23 9.30 22.61 0.21 -2.02 16 18 C -0.13 -2.77 5.75 -19.78 -0.11 -2.89 16 19 C 0.11 2.35 6.50 22.70 0.15 2.50 16 20 C 0.07 1.76 11.12 85.09 0.95 2.70 16 21 N -0.43 -13.54 6.82 -184.32 -1.26 -14.79 16 22 O -0.31 -5.07 10.29 -88.28 -0.91 -5.98 16 23 C 0.05 0.40 7.01 72.12 0.51 0.90 16 24 C -0.15 -1.18 6.20 30.78 0.19 -0.99 16 25 C -0.08 -1.07 5.90 29.83 0.18 -0.89 16 26 C 0.10 5.42 5.65 86.93 0.49 5.91 16 27 H 0.27 14.44 8.31 -92.71 -0.77 13.66 16 28 H 0.38 21.55 6.93 -74.06 -0.51 21.04 16 29 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.09 3.40 8.01 -2.39 -0.02 3.38 16 31 H 0.07 2.72 7.41 -2.39 -0.02 2.70 16 32 H 0.08 2.89 7.52 -2.39 -0.02 2.87 16 33 H 0.15 4.21 7.64 -2.91 -0.02 4.18 16 34 H 0.20 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 2.67 8.04 -2.39 -0.02 2.66 16 42 H 0.04 2.60 7.64 -2.39 -0.02 2.58 16 Total: -1.00 -70.58 344.05 0.72 -69.86 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.54 Total: 34.19 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 4.83 Total: 17.71 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -3.74 Total: -95.92 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -2.94 Total: -70.38 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.58 0.72 -69.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649856495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.352 kcal (2) G-P(sol) polarization free energy of solvation -70.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds