Wall clock time and date at job start Tue Mar 31 2020 11:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47405 * 89.99626 * 3 2 1 5 5 H 1.48500 * 109.46978 * 209.99464 * 3 2 1 6 6 H 1.48499 * 109.47334 * 329.99319 * 3 2 1 7 7 C 1.37878 * 119.99704 * 179.71571 * 2 1 3 8 8 H 1.07999 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99971 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99981 * 294.29939 * 10 9 7 12 12 C 1.53236 * 109.34425 * 172.74667 * 11 10 9 13 13 N 1.47083 * 108.51806 * 53.82748 * 12 11 10 14 14 C 1.34775 * 120.87741 * 128.83825 * 13 12 11 15 15 O 1.21548 * 120.00441 * 354.63120 * 14 13 12 16 16 C 1.47862 * 119.99886 * 174.62742 * 14 13 12 17 17 C 1.39716 * 120.06976 * 326.95999 * 16 14 13 18 18 C 1.38065 * 120.15653 * 179.78603 * 17 16 14 19 19 C 1.38089 * 120.30105 * 0.47495 * 18 17 16 20 20 C 1.39717 * 120.13945 * 359.78343 * 19 18 17 21 21 C 1.47745 * 120.08113 * 180.02562 * 20 19 18 22 22 O 1.21462 * 119.99839 * 179.97438 * 21 20 19 23 23 O 1.34703 * 119.99824 * 359.97372 * 21 20 19 24 24 C 1.39281 * 120.07368 * 147.23885 * 16 14 13 25 25 C 1.47078 * 118.24096 * 308.81707 * 13 12 11 26 26 C 1.46894 * 111.00315 * 169.99865 * 10 9 7 27 27 H 0.97007 * 119.99918 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46655 * 300.00026 * 9 7 2 29 29 H 1.09000 * 109.47204 * 60.00037 * 9 7 2 30 30 H 1.09005 * 109.49369 * 292.71035 * 11 10 9 31 31 H 1.09005 * 109.49353 * 52.78400 * 11 10 9 32 32 H 1.08998 * 109.62873 * 294.11917 * 12 11 10 33 33 H 1.09000 * 109.63164 * 173.53600 * 12 11 10 34 34 H 1.07999 * 119.92188 * 0.02562 * 17 16 14 35 35 H 1.08000 * 119.84874 * 180.21188 * 18 17 16 36 36 H 1.08000 * 119.92952 * 179.76628 * 19 18 17 37 37 H 0.96698 * 116.99812 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.14557 * 0.02562 * 24 16 14 39 39 H 1.09000 * 109.63020 * 291.47843 * 25 13 12 40 40 H 1.08995 * 109.78932 * 170.99123 * 25 13 12 41 41 H 1.09002 * 109.49419 * 307.21068 * 26 10 9 42 42 H 1.09003 * 109.49156 * 67.28644 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.6999 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0059 8 1 1.4644 -2.1293 0.0101 9 6 3.5115 -1.1941 0.0065 10 7 4.0011 -2.5791 0.0126 11 6 3.6440 -3.2582 1.2654 12 6 4.0097 -4.7425 1.1602 13 7 5.4257 -4.8488 0.7769 14 6 6.2754 -5.6259 1.4773 15 8 5.8997 -6.1733 2.4954 16 6 7.6648 -5.8128 1.0070 17 6 7.9449 -5.8246 -0.3617 18 6 9.2422 -5.9945 -0.8027 19 6 10.2698 -6.1636 0.1041 20 6 10.0030 -6.1593 1.4755 21 6 11.1035 -6.3398 2.4446 22 8 10.8700 -6.3353 3.6366 23 8 12.3659 -6.5094 2.0062 24 6 8.6962 -5.9832 1.9274 25 6 5.8898 -4.0848 -0.3911 26 6 5.4500 -2.6264 -0.2248 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6846 -0.8857 29 1 3.8746 -0.6761 0.8942 30 1 4.1913 -2.8064 2.0928 31 1 2.5727 -3.1590 1.4403 32 1 3.3885 -5.2199 0.4024 33 1 3.8539 -5.2273 2.1240 34 1 7.1454 -5.6966 -1.0764 35 1 9.4536 -5.9994 -1.8618 36 1 11.2818 -6.2998 -0.2476 37 1 13.0521 -6.6239 2.6778 38 1 8.4842 -5.9798 2.9864 39 1 5.4492 -4.4989 -1.2980 40 1 6.9767 -4.1344 -0.4564 41 1 5.6885 -2.0690 -1.1306 42 1 5.9722 -2.1834 0.6233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002457042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:21 Heat of formation + Delta-G solvation = -69.680891 kcal Electronic energy + Delta-G solvation = -26124.092577 eV Core-core repulsion = 22262.892261 eV Total energy + Delta-G solvation = -3861.200316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05291 -40.29583 -38.61322 -37.57961 -36.49789 -34.71975 -32.59505 -32.17485 -31.59223 -30.64448 -28.80889 -26.06214 -25.29099 -24.18483 -23.17192 -22.00729 -21.49103 -20.71900 -19.41004 -18.33732 -17.85030 -16.98532 -16.86346 -16.33479 -16.04241 -15.88920 -15.50834 -14.98315 -14.67170 -14.61081 -14.52558 -13.97466 -13.85944 -13.74174 -13.52899 -13.25008 -12.86366 -12.62645 -12.41948 -12.03756 -11.94216 -11.80486 -11.58886 -11.36274 -11.05417 -11.02701 -10.85087 -10.70356 -10.37584 -9.97228 -9.90012 -9.51637 -9.42582 -9.34081 -8.65244 -8.61688 -7.54954 -6.11732 -4.10015 0.14042 0.63701 2.00491 2.47085 2.70914 2.94577 3.23548 3.31605 3.32010 3.39530 4.15316 4.35157 4.35807 4.42725 4.54444 4.64480 4.70177 4.91015 5.03011 5.16721 5.21816 5.25178 5.33617 5.41120 5.51041 5.65757 5.72524 5.76538 5.80735 5.85295 5.88867 6.00002 6.04070 6.21909 6.27414 6.41075 6.57046 6.75548 6.86933 7.34542 7.45881 7.48693 7.74951 7.89090 8.06149 8.56016 8.95580 9.49366 11.01099 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002685 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.762161 B =10424.464013 C =10669.143652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.049 3.951 12 C 0.116 3.884 13 N -0.600 5.600 14 C 0.557 3.443 15 O -0.536 6.536 16 C -0.136 4.136 17 C -0.056 4.056 18 C -0.139 4.139 19 C -0.041 4.041 20 C -0.138 4.138 21 C 0.528 3.472 22 O -0.508 6.508 23 O -0.513 6.513 24 C 0.000 4.000 25 C 0.098 3.902 26 C 0.036 3.964 27 H 0.264 0.736 28 H 0.030 0.970 29 H -0.016 1.016 30 H 0.026 0.974 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.416 0.584 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.492 -12.527 -2.716 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.080 4.080 12 C -0.006 4.006 13 N -0.333 5.333 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.139 4.139 17 C -0.074 4.074 18 C -0.157 4.157 19 C -0.059 4.059 20 C -0.139 4.139 21 C 0.372 3.628 22 O -0.397 6.397 23 O -0.325 6.325 24 C -0.019 4.019 25 C -0.025 4.025 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.002 0.998 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.275 0.725 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 22.497 -12.875 -2.528 26.044 hybrid contribution 1.240 1.469 1.022 2.177 sum 23.737 -11.406 -1.506 26.378 Atomic orbital electron populations 1.69890 1.06117 1.26939 1.50696 1.24898 0.94742 0.98870 0.94746 0.86859 0.80276 0.84053 0.78494 1.20354 1.19249 1.21105 1.21000 0.88554 0.94780 1.50748 0.90021 1.20185 0.97246 0.83667 0.95209 1.61940 1.09704 1.19488 1.33921 1.22400 1.03188 0.91807 0.90566 1.21928 0.79017 0.97784 1.01880 1.48117 1.10404 1.44815 1.29949 1.18166 0.84629 0.79332 0.83379 1.90792 1.77550 1.49113 1.23991 1.19894 0.93990 1.06116 0.93936 1.22007 0.97981 0.92616 0.94820 1.21173 0.92099 1.01879 1.00572 1.21659 1.00440 0.92432 0.91401 1.18924 0.91509 1.10594 0.92854 1.20785 0.82266 0.72470 0.87242 1.90930 1.84314 1.46632 1.17805 1.84527 1.18054 1.84497 1.45398 1.21314 0.89541 0.89989 1.01085 1.22434 0.99580 0.92113 0.88340 1.22469 0.90910 0.94912 1.01080 0.92572 0.95170 0.99796 0.95545 0.87723 0.90355 0.88972 0.83524 0.84102 0.83927 0.72506 0.83439 0.90008 0.89065 0.89834 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.94 27.46 -169.99 -4.67 16.27 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.10 6.55 56.52 0.37 -5.73 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -13.96 8.96 -34.44 -0.31 -14.27 16 8 H 0.08 2.41 7.37 -52.49 -0.39 2.02 16 9 C 0.16 3.75 3.79 -4.98 -0.02 3.73 16 10 N -0.53 -10.15 4.62 -235.77 -1.09 -11.24 16 11 C 0.05 0.90 5.46 -3.70 -0.02 0.88 16 12 C 0.12 1.80 6.61 -3.60 -0.02 1.78 16 13 N -0.60 -8.47 3.01 -173.57 -0.52 -8.99 16 14 C 0.56 8.16 7.42 -12.32 -0.09 8.07 16 15 O -0.54 -9.69 16.22 5.32 0.09 -9.60 16 16 C -0.14 -1.56 5.36 -105.02 -0.56 -2.13 16 17 C -0.06 -0.46 7.38 -39.09 -0.29 -0.75 16 18 C -0.14 -0.88 10.02 -39.70 -0.40 -1.28 16 19 C -0.04 -0.29 9.61 -39.08 -0.38 -0.66 16 20 C -0.14 -1.32 5.87 -105.03 -0.62 -1.94 16 21 C 0.53 5.14 8.27 34.62 0.29 5.43 16 22 O -0.51 -6.66 17.13 -19.24 -0.33 -6.99 16 23 O -0.51 -3.12 12.67 -40.50 -0.51 -3.63 16 24 C 0.00 0.00 9.14 -38.76 -0.35 -0.36 16 25 C 0.10 1.16 4.86 -3.60 -0.02 1.14 16 26 C 0.04 0.54 5.62 -3.70 -0.02 0.52 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.70 7.04 -51.93 -0.37 0.33 16 29 H -0.02 -0.37 7.54 -51.93 -0.39 -0.76 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 2.13 6.67 -51.93 -0.35 1.78 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 34 H 0.15 1.01 5.73 -52.49 -0.30 0.71 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.14 0.69 7.60 -52.49 -0.40 0.29 16 37 H 0.42 0.76 9.11 45.56 0.42 1.18 16 38 H 0.15 1.93 7.55 -52.48 -0.40 1.54 16 39 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 40 H 0.09 0.84 4.50 -51.93 -0.23 0.61 16 41 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -34.91 346.58 -8.40 -43.32 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.46 Total: -0.32 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.91 Total: 2.03 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.84 Total: -46.30 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.76 Total: -20.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.91 -8.40 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002457042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.364 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds