Wall clock time and date at job start Tue Mar 31 2020 11:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48496 * 109.47405 * 89.99626 * 3 2 1 5 5 H 1.48500 * 109.46978 * 209.99464 * 3 2 1 6 6 H 1.48499 * 109.47334 * 329.99319 * 3 2 1 7 7 C 1.37878 * 119.99704 * 179.71571 * 2 1 3 8 8 H 1.07999 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99971 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99981 * 294.29939 * 10 9 7 12 12 C 1.53236 * 109.34425 * 172.74667 * 11 10 9 13 13 N 1.47083 * 108.51806 * 53.82748 * 12 11 10 14 14 C 1.34775 * 120.87741 * 128.83825 * 13 12 11 15 15 O 1.21548 * 120.00441 * 354.63120 * 14 13 12 16 16 C 1.47862 * 119.99886 * 174.62742 * 14 13 12 17 17 C 1.39716 * 120.06976 * 326.95999 * 16 14 13 18 18 C 1.38065 * 120.15653 * 179.78603 * 17 16 14 19 19 C 1.38089 * 120.30105 * 0.47495 * 18 17 16 20 20 C 1.39717 * 120.13945 * 359.78343 * 19 18 17 21 21 C 1.47745 * 120.08113 * 180.02562 * 20 19 18 22 22 O 1.21462 * 119.99839 * 179.97438 * 21 20 19 23 23 O 1.34703 * 119.99824 * 359.97372 * 21 20 19 24 24 C 1.39281 * 120.07368 * 147.23885 * 16 14 13 25 25 C 1.47078 * 118.24096 * 308.81707 * 13 12 11 26 26 C 1.46894 * 111.00315 * 169.99865 * 10 9 7 27 27 H 0.97007 * 119.99918 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46655 * 300.00026 * 9 7 2 29 29 H 1.09000 * 109.47204 * 60.00037 * 9 7 2 30 30 H 1.09005 * 109.49369 * 292.71035 * 11 10 9 31 31 H 1.09005 * 109.49353 * 52.78400 * 11 10 9 32 32 H 1.08998 * 109.62873 * 294.11917 * 12 11 10 33 33 H 1.09000 * 109.63164 * 173.53600 * 12 11 10 34 34 H 1.07999 * 119.92188 * 0.02562 * 17 16 14 35 35 H 1.08000 * 119.84874 * 180.21188 * 18 17 16 36 36 H 1.08000 * 119.92952 * 179.76628 * 19 18 17 37 37 H 0.96698 * 116.99812 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.14557 * 0.02562 * 24 16 14 39 39 H 1.09000 * 109.63020 * 291.47843 * 25 13 12 40 40 H 1.08995 * 109.78932 * 170.99123 * 25 13 12 41 41 H 1.09002 * 109.49419 * 307.21068 * 26 10 9 42 42 H 1.09003 * 109.49156 * 67.28644 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.6999 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0059 8 1 1.4644 -2.1293 0.0101 9 6 3.5115 -1.1941 0.0065 10 7 4.0011 -2.5791 0.0126 11 6 3.6440 -3.2582 1.2654 12 6 4.0097 -4.7425 1.1602 13 7 5.4257 -4.8488 0.7769 14 6 6.2754 -5.6259 1.4773 15 8 5.8997 -6.1733 2.4954 16 6 7.6648 -5.8128 1.0070 17 6 7.9449 -5.8246 -0.3617 18 6 9.2422 -5.9945 -0.8027 19 6 10.2698 -6.1636 0.1041 20 6 10.0030 -6.1593 1.4755 21 6 11.1035 -6.3398 2.4446 22 8 10.8700 -6.3353 3.6366 23 8 12.3659 -6.5094 2.0062 24 6 8.6962 -5.9832 1.9274 25 6 5.8898 -4.0848 -0.3911 26 6 5.4500 -2.6264 -0.2248 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6846 -0.8857 29 1 3.8746 -0.6761 0.8942 30 1 4.1913 -2.8064 2.0928 31 1 2.5727 -3.1590 1.4403 32 1 3.3885 -5.2199 0.4024 33 1 3.8539 -5.2273 2.1240 34 1 7.1454 -5.6966 -1.0764 35 1 9.4536 -5.9994 -1.8618 36 1 11.2818 -6.2998 -0.2476 37 1 13.0521 -6.6239 2.6778 38 1 8.4842 -5.9798 2.9864 39 1 5.4492 -4.4989 -1.2980 40 1 6.9767 -4.1344 -0.4564 41 1 5.6885 -2.0690 -1.1306 42 1 5.9722 -2.1834 0.6233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002457042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:20 Heat of formation + Delta-G solvation = -96.153033 kcal Electronic energy + Delta-G solvation = -26125.240495 eV Core-core repulsion = 22262.892261 eV Total energy + Delta-G solvation = -3862.348234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92101 -41.19685 -39.54028 -38.82490 -37.16196 -36.14711 -34.48215 -33.22246 -32.27610 -31.78402 -30.47288 -27.56614 -26.05767 -25.25643 -24.33086 -23.36870 -22.41155 -21.95913 -20.50462 -19.18220 -18.94800 -18.64306 -17.88965 -17.15863 -16.86618 -16.78544 -16.54277 -16.54171 -16.07228 -15.95165 -15.43716 -15.33590 -15.05589 -14.74766 -14.48151 -14.42044 -14.29929 -13.97055 -13.52732 -13.23127 -12.92582 -12.82521 -12.65864 -12.58528 -12.50790 -12.42663 -12.22651 -11.92464 -11.77991 -11.77697 -11.44529 -11.06406 -10.79095 -10.19338 -10.15629 -9.83554 -9.10889 -8.27910 -6.31443 -0.52913 -0.11163 1.29253 1.35766 1.36087 1.46891 1.61280 1.81843 2.02743 2.34365 2.65257 3.03587 3.13519 3.27022 3.74415 3.78633 3.95321 3.98143 4.00314 4.07904 4.17525 4.20448 4.31458 4.37588 4.50858 4.65432 4.68476 4.79053 4.80658 4.81494 4.91652 4.99209 5.07405 5.10930 5.14782 5.22035 5.36762 5.50597 5.52178 5.66762 5.91296 6.22297 6.29656 6.60655 6.75221 6.89172 6.94012 7.32155 8.88378 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002685 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.762161 B =10424.464013 C =10669.143652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.243 1.243 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.041 0.959 9 C 0.172 3.828 10 N -0.535 5.535 11 C 0.056 3.944 12 C 0.126 3.874 13 N -0.601 5.601 14 C 0.554 3.446 15 O -0.584 6.584 16 C -0.154 4.154 17 C -0.050 4.050 18 C -0.120 4.120 19 C -0.023 4.023 20 C -0.149 4.149 21 C 0.533 3.467 22 O -0.554 6.554 23 O -0.496 6.496 24 C -0.021 4.021 25 C 0.102 3.898 26 C 0.031 3.969 27 H 0.266 0.734 28 H 0.041 0.959 29 H -0.020 1.020 30 H 0.015 0.985 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.435 0.565 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.525 -12.363 -5.901 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.166 1.166 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.045 3.955 10 N -0.259 5.259 11 C -0.073 4.073 12 C 0.004 3.996 13 N -0.332 5.332 14 C 0.345 3.655 15 O -0.465 6.465 16 C -0.157 4.157 17 C -0.068 4.068 18 C -0.137 4.137 19 C -0.041 4.041 20 C -0.150 4.150 21 C 0.379 3.621 22 O -0.447 6.447 23 O -0.310 6.310 24 C -0.040 4.040 25 C -0.019 4.019 26 C -0.098 4.098 27 H 0.075 0.925 28 H 0.059 0.941 29 H -0.003 1.003 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.185 0.815 35 H 0.203 0.797 36 H 0.191 0.809 37 H 0.298 0.702 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 26.594 -12.725 -5.750 30.038 hybrid contribution 0.052 1.309 1.991 2.383 sum 26.647 -11.417 -3.759 29.232 Atomic orbital electron populations 1.70049 1.08138 1.28072 1.52543 1.25835 0.95569 1.03109 0.94451 0.85740 0.79752 0.78801 0.78772 1.20094 1.16618 1.20752 1.21259 0.91039 0.93320 1.49812 0.94031 1.19955 0.94318 0.86042 0.95207 1.61851 1.12977 1.17218 1.33904 1.22239 1.01119 0.93711 0.90196 1.21651 0.80675 0.95413 1.01911 1.48168 1.09488 1.44976 1.30617 1.18736 0.85854 0.78406 0.82543 1.90760 1.78623 1.50999 1.26120 1.19634 0.91591 1.08825 0.95615 1.22240 0.99757 0.91724 0.93108 1.21652 0.90510 0.99048 1.02506 1.22058 1.02275 0.89957 0.89831 1.18991 0.90428 1.11274 0.94341 1.20886 0.83274 0.71370 0.86549 1.90919 1.85117 1.48937 1.19715 1.84470 1.17137 1.83537 1.45841 1.21126 0.91097 0.91975 0.99815 1.22674 1.01756 0.89538 0.87919 1.22678 0.87645 0.97661 1.01769 0.92480 0.94096 1.00251 0.96700 0.90877 0.89565 0.89856 0.81537 0.79695 0.80853 0.70236 0.86680 0.87808 0.85615 0.87630 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.44 5.47 84.65 0.46 0.91 16 3 Si 0.95 43.00 27.46 68.60 1.88 44.88 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.24 -9.98 6.55 99.48 0.65 -9.33 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -28.88 8.96 25.60 0.23 -28.65 16 8 H 0.04 2.59 7.37 -2.91 -0.02 2.57 16 9 C 0.17 7.82 3.79 85.56 0.32 8.14 16 10 N -0.53 -20.38 4.62 -899.83 -4.16 -24.54 16 11 C 0.06 2.16 5.46 86.38 0.47 2.63 16 12 C 0.13 4.04 6.61 86.35 0.57 4.61 16 13 N -0.60 -16.45 3.01 -821.34 -2.47 -18.92 16 14 C 0.55 16.32 7.42 86.79 0.64 16.96 16 15 O -0.58 -22.26 16.22 -3.87 -0.06 -22.33 16 16 C -0.15 -3.33 5.36 -20.12 -0.11 -3.43 16 17 C -0.05 -0.61 7.38 22.59 0.17 -0.44 16 18 C -0.12 -0.79 10.02 22.19 0.22 -0.57 16 19 C -0.02 -0.21 9.61 22.59 0.22 0.00 16 20 C -0.15 -2.59 5.87 -20.13 -0.12 -2.70 16 21 C 0.53 9.79 8.27 70.34 0.58 10.37 16 22 O -0.55 -14.96 17.13 19.96 0.34 -14.62 16 23 O -0.50 -4.62 12.67 -56.12 -0.71 -5.33 16 24 C -0.02 -0.48 9.14 22.80 0.21 -0.28 16 25 C 0.10 2.08 4.86 86.35 0.42 2.50 16 26 C 0.03 0.86 5.62 86.38 0.49 1.34 16 27 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 28 H 0.04 1.79 7.04 -2.39 -0.02 1.77 16 29 H -0.02 -0.94 7.54 -2.39 -0.02 -0.95 16 30 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 3.22 6.67 -2.38 -0.02 3.20 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.08 2.81 7.04 -2.39 -0.02 2.79 16 34 H 0.17 1.37 5.73 -2.91 -0.02 1.36 16 35 H 0.19 -0.24 8.06 -2.91 -0.02 -0.27 16 36 H 0.17 0.58 7.60 -2.91 -0.02 0.56 16 37 H 0.44 0.48 9.11 -74.06 -0.67 -0.20 16 38 H 0.12 3.36 7.55 -2.91 -0.02 3.34 16 39 H 0.10 1.75 7.96 -2.39 -0.02 1.73 16 40 H 0.13 1.74 4.50 -2.39 -0.01 1.73 16 41 H 0.11 2.48 7.99 -2.39 -0.02 2.46 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -82.23 346.58 0.24 -81.99 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.34 Total: 5.63 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.78 Total: 11.38 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -6.33 Total: -101.61 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.43 Total: -42.28 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.88 kcal Total: -82.23 0.24 -81.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002457042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.162 kcal (2) G-P(sol) polarization free energy of solvation -82.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds