Wall clock time and date at job start Tue Mar 31 2020 13:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47439 * 2 1 4 4 C 1.50697 * 110.53633 * 184.99931 * 3 2 1 5 5 C 1.38267 * 119.94354 * 147.87235 * 4 3 2 6 6 C 1.38151 * 120.05677 * 180.02562 * 5 4 3 7 7 C 1.38733 * 119.94004 * 0.02562 * 6 5 4 8 8 O 1.35904 * 120.05128 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99628 * 180.02562 * 8 7 6 10 10 C 1.38730 * 119.89273 * 0.27301 * 7 6 5 11 11 C 1.38147 * 119.94222 * 359.47199 * 10 7 6 12 12 N 1.47312 * 110.73235 * 307.92118 * 3 2 1 13 13 C 1.34520 * 106.61983 * 118.58480 * 12 3 2 14 14 O 1.21544 * 123.77439 * 179.97438 * 13 12 3 15 15 N 1.33793 * 112.46020 * 0.02562 * 13 12 3 16 16 C 1.46504 * 124.17909 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46940 * 270.03737 * 16 15 13 18 18 H 1.07999 * 120.00172 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00052 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99892 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47183 * 89.99865 * 21 19 17 23 23 H 1.48506 * 109.46679 * 209.99562 * 21 19 17 24 24 H 1.48496 * 109.47278 * 329.99299 * 21 19 17 25 25 C 1.34771 * 111.64216 * 359.97438 * 15 13 12 26 26 O 1.21236 * 127.15531 * 180.02562 * 25 15 13 27 27 H 1.09000 * 109.46824 * 59.99672 * 1 2 3 28 28 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46790 * 299.99783 * 1 2 3 30 30 H 1.09001 * 109.47230 * 239.99981 * 2 1 3 31 31 H 1.09000 * 109.46824 * 120.00328 * 2 1 3 32 32 H 1.08003 * 119.97499 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.02823 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 35 35 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 36 36 H 1.09004 * 109.46926 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.03088 * 179.72386 * 10 7 6 38 38 H 1.07999 * 119.97444 * 180.22577 * 11 10 7 39 39 H 0.97002 * 126.69010 * 298.56879 * 12 3 2 40 40 H 1.08999 * 109.47252 * 30.03932 * 16 15 13 41 41 H 1.08999 * 109.46815 * 150.04215 * 16 15 13 42 42 H 0.97002 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5417 1.4722 -0.1230 5 6 4.1596 2.5183 -0.7830 6 6 5.5360 2.5476 -0.8976 7 6 6.2983 1.5259 -0.3501 8 8 7.6526 1.5528 -0.4611 9 6 8.3731 0.4674 0.1261 10 6 5.6756 0.4742 0.3062 11 6 4.2993 0.4522 0.4227 12 7 1.4157 2.2164 -1.0868 13 6 0.7296 3.2153 -0.5028 14 8 0.0922 4.0473 -1.1183 15 7 0.8280 3.1913 0.8313 16 6 0.1832 4.1597 1.7217 17 6 1.1125 5.3226 1.9562 18 1 2.0858 5.3390 1.4885 19 6 0.7197 6.3663 2.7671 20 7 1.5304 7.3814 2.9714 21 14 -0.9641 6.3382 3.5755 22 1 -0.8665 5.6731 4.8997 23 1 -1.4500 7.7300 3.7553 24 1 -1.9144 5.5896 2.7143 25 6 1.5936 2.1662 1.2548 26 8 1.8679 1.8820 2.4010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5656 3.3128 -1.2101 33 1 6.0181 3.3652 -1.4129 34 1 8.0599 -0.4689 -0.3358 35 1 8.1676 0.4313 1.1960 36 1 9.4416 0.6116 -0.0343 37 1 6.2666 -0.3246 0.7294 38 1 3.8142 -0.3644 0.9368 39 1 1.4858 2.0402 -2.0381 40 1 -0.7383 4.5178 1.2627 41 1 -0.0470 3.6809 2.6734 42 1 1.2542 8.1155 3.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005264147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:41 Heat of formation + Delta-G solvation = -46.351675 kcal Electronic energy + Delta-G solvation = -27454.585684 eV Core-core repulsion = 23594.396999 eV Total energy + Delta-G solvation = -3860.188685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23844 -40.12473 -38.15862 -37.67706 -35.90471 -34.85643 -32.86552 -32.10935 -31.06773 -30.46391 -28.52496 -27.81324 -25.98569 -23.61400 -23.18538 -22.58348 -21.85598 -20.61200 -19.70273 -18.36168 -17.49254 -17.27675 -16.55289 -16.28799 -15.91698 -15.84710 -15.26426 -14.96919 -14.86367 -14.51179 -14.11546 -14.07066 -13.81607 -13.54696 -13.45366 -13.19381 -12.82222 -12.60856 -12.48118 -12.06701 -11.96857 -11.73076 -11.58858 -11.39580 -11.23365 -11.18170 -10.84985 -10.68068 -10.41118 -10.16382 -9.66763 -9.60246 -9.27245 -9.04397 -8.66004 -8.64334 -8.19932 -6.14078 -4.15613 1.22316 1.30260 2.16819 2.85667 3.11900 3.27322 3.33628 3.34573 3.46900 3.68704 3.70846 4.29377 4.34729 4.44337 4.62379 4.74229 4.80700 4.92811 4.96540 5.10894 5.17126 5.20445 5.25056 5.31788 5.39147 5.54661 5.62643 5.71810 5.78907 5.92663 5.95648 6.12276 6.14399 6.24155 6.39350 6.48350 6.64472 6.65255 6.76074 7.11846 7.25535 7.43343 7.78561 7.98405 8.35039 8.71344 8.86187 9.42312 10.98820 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.004519 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.557350 B = 6194.790144 C = 7213.225794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C 0.168 3.832 4 C -0.126 4.126 5 C -0.053 4.053 6 C -0.148 4.148 7 C 0.132 3.868 8 O -0.317 6.317 9 C 0.027 3.973 10 C -0.209 4.209 11 C -0.054 4.054 12 N -0.728 5.728 13 C 0.704 3.296 14 O -0.538 6.538 15 N -0.552 5.552 16 C 0.220 3.780 17 C -0.537 4.537 18 H 0.077 0.923 19 C 0.079 3.921 20 N -0.890 5.890 21 Si 0.874 3.126 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.263 1.263 25 C 0.535 3.465 26 O -0.465 6.465 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.433 0.567 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -19.303 -8.175 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C 0.077 3.923 4 C -0.128 4.128 5 C -0.071 4.071 6 C -0.167 4.167 7 C 0.087 3.913 8 O -0.231 6.231 9 C -0.068 4.068 10 C -0.228 4.228 11 C -0.072 4.072 12 N -0.393 5.393 13 C 0.405 3.595 14 O -0.411 6.411 15 N -0.295 5.295 16 C 0.101 3.899 17 C -0.575 4.575 18 H 0.095 0.905 19 C -0.125 4.125 20 N -0.527 5.527 21 Si 0.700 3.300 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.187 1.187 25 C 0.320 3.680 26 O -0.335 6.335 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.277 0.723 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.179 -18.567 -7.758 21.365 hybrid contribution -0.608 -0.029 0.275 0.668 sum 6.571 -18.597 -7.483 21.095 Atomic orbital electron populations 1.21821 0.94597 1.02316 1.02773 1.21761 0.97054 0.92255 1.04049 1.20115 0.91060 0.94181 0.86961 1.19356 0.92367 0.97350 1.03712 1.20876 0.93598 0.96695 0.95979 1.20406 0.92839 0.99010 1.04413 1.19089 0.82416 0.94568 0.95227 1.86080 1.15900 1.46633 1.74449 1.23059 0.96653 0.88962 0.98140 1.21151 0.95575 1.00140 1.05924 1.20767 0.92807 0.97435 0.96231 1.45607 1.54090 1.30929 1.08628 1.15886 0.79969 0.81532 0.82086 1.90973 1.44778 1.39263 1.66075 1.46450 1.46777 1.28603 1.07668 1.19945 0.94533 0.87144 0.88270 1.21111 1.03058 1.02461 1.30862 0.90491 1.24774 0.97258 0.94835 0.95608 1.69878 1.36203 1.08947 1.37678 0.86883 0.84612 0.78087 0.80450 1.19706 1.20615 1.18727 1.20383 0.77548 0.80529 0.89537 1.90728 1.55016 1.68018 1.19712 0.91871 0.91722 0.92595 0.89808 0.89429 0.84883 0.84841 0.92676 0.92479 0.88325 0.85210 0.85077 0.72340 0.93009 0.93769 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.38 37.16 0.35 -1.38 16 2 C -0.11 -1.19 4.54 -26.73 -0.12 -1.32 16 3 C 0.17 2.40 0.95 -133.25 -0.13 2.28 16 4 C -0.13 -1.75 4.93 -104.60 -0.52 -2.27 16 5 C -0.05 -0.77 9.34 -39.60 -0.37 -1.14 16 6 C -0.15 -2.02 9.99 -39.43 -0.39 -2.42 16 7 C 0.13 1.69 6.69 -39.22 -0.26 1.43 16 8 O -0.32 -3.74 10.50 -19.44 -0.20 -3.94 16 9 C 0.03 0.20 9.81 101.05 0.99 1.19 16 10 C -0.21 -2.38 9.04 -39.43 -0.36 -2.74 16 11 C -0.05 -0.65 9.17 -39.60 -0.36 -1.01 16 12 N -0.73 -10.40 3.73 -54.03 -0.20 -10.60 16 13 C 0.70 13.98 8.52 -88.02 -0.75 13.23 16 14 O -0.54 -12.49 17.48 5.33 0.09 -12.40 16 15 N -0.55 -11.99 2.59 -122.02 -0.32 -12.30 16 16 C 0.22 5.51 4.52 -5.19 -0.02 5.49 16 17 C -0.54 -15.73 9.94 -34.44 -0.34 -16.07 16 18 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -27.53 13.96 55.43 0.77 -26.75 16 21 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 25 C 0.53 10.47 5.89 -10.55 -0.06 10.41 16 26 O -0.47 -10.21 17.76 5.60 0.10 -10.11 16 27 H 0.06 0.70 7.47 -51.93 -0.39 0.31 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.88 6.89 -51.93 -0.36 0.52 16 32 H 0.13 2.01 7.31 -52.48 -0.38 1.63 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 35 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 38 H 0.13 1.31 6.43 -52.49 -0.34 0.97 16 39 H 0.43 4.76 8.96 -40.82 -0.37 4.40 16 40 H 0.05 1.31 6.92 -51.93 -0.36 0.95 16 41 H 0.04 1.08 7.43 -51.93 -0.39 0.70 16 42 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -35.77 351.65 -6.94 -42.70 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.37 Total: 3.43 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -2.44 Total: 7.91 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.26 Total: -49.65 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.01 Total: -26.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.77 -6.94 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005264147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.647 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds