Wall clock time and date at job start Tue Mar 31 2020 13:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47439 * 2 1 4 4 C 1.50697 * 110.53633 * 184.99931 * 3 2 1 5 5 C 1.38267 * 119.94354 * 147.87235 * 4 3 2 6 6 C 1.38151 * 120.05677 * 180.02562 * 5 4 3 7 7 C 1.38733 * 119.94004 * 0.02562 * 6 5 4 8 8 O 1.35904 * 120.05128 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99628 * 180.02562 * 8 7 6 10 10 C 1.38730 * 119.89273 * 0.27301 * 7 6 5 11 11 C 1.38147 * 119.94222 * 359.47199 * 10 7 6 12 12 N 1.47312 * 110.73235 * 307.92118 * 3 2 1 13 13 C 1.34520 * 106.61983 * 118.58480 * 12 3 2 14 14 O 1.21544 * 123.77439 * 179.97438 * 13 12 3 15 15 N 1.33793 * 112.46020 * 0.02562 * 13 12 3 16 16 C 1.46504 * 124.17909 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.46940 * 270.03737 * 16 15 13 18 18 H 1.07999 * 120.00172 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00052 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99892 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47183 * 89.99865 * 21 19 17 23 23 H 1.48506 * 109.46679 * 209.99562 * 21 19 17 24 24 H 1.48496 * 109.47278 * 329.99299 * 21 19 17 25 25 C 1.34771 * 111.64216 * 359.97438 * 15 13 12 26 26 O 1.21236 * 127.15531 * 180.02562 * 25 15 13 27 27 H 1.09000 * 109.46824 * 59.99672 * 1 2 3 28 28 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46790 * 299.99783 * 1 2 3 30 30 H 1.09001 * 109.47230 * 239.99981 * 2 1 3 31 31 H 1.09000 * 109.46824 * 120.00328 * 2 1 3 32 32 H 1.08003 * 119.97499 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.02823 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47382 * 59.99787 * 9 8 7 35 35 H 1.09001 * 109.46938 * 299.99774 * 9 8 7 36 36 H 1.09004 * 109.46926 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.03088 * 179.72386 * 10 7 6 38 38 H 1.07999 * 119.97444 * 180.22577 * 11 10 7 39 39 H 0.97002 * 126.69010 * 298.56879 * 12 3 2 40 40 H 1.08999 * 109.47252 * 30.03932 * 16 15 13 41 41 H 1.08999 * 109.46815 * 150.04215 * 16 15 13 42 42 H 0.97002 * 120.00082 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5417 1.4722 -0.1230 5 6 4.1596 2.5183 -0.7830 6 6 5.5360 2.5476 -0.8976 7 6 6.2983 1.5259 -0.3501 8 8 7.6526 1.5528 -0.4611 9 6 8.3731 0.4674 0.1261 10 6 5.6756 0.4742 0.3062 11 6 4.2993 0.4522 0.4227 12 7 1.4157 2.2164 -1.0868 13 6 0.7296 3.2153 -0.5028 14 8 0.0922 4.0473 -1.1183 15 7 0.8280 3.1913 0.8313 16 6 0.1832 4.1597 1.7217 17 6 1.1125 5.3226 1.9562 18 1 2.0858 5.3390 1.4885 19 6 0.7197 6.3663 2.7671 20 7 1.5304 7.3814 2.9714 21 14 -0.9641 6.3382 3.5755 22 1 -0.8665 5.6731 4.8997 23 1 -1.4500 7.7300 3.7553 24 1 -1.9144 5.5896 2.7143 25 6 1.5936 2.1662 1.2548 26 8 1.8679 1.8820 2.4010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5656 3.3128 -1.2101 33 1 6.0181 3.3652 -1.4129 34 1 8.0599 -0.4689 -0.3358 35 1 8.1676 0.4313 1.1960 36 1 9.4416 0.6116 -0.0343 37 1 6.2666 -0.3246 0.7294 38 1 3.8142 -0.3644 0.9368 39 1 1.4858 2.0402 -2.0381 40 1 -0.7383 4.5178 1.2627 41 1 -0.0470 3.6809 2.6734 42 1 1.2542 8.1155 3.5422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005264147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:41 Heat of formation + Delta-G solvation = -71.738144 kcal Electronic energy + Delta-G solvation = -27455.686524 eV Core-core repulsion = 23594.396999 eV Total energy + Delta-G solvation = -3861.289525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.69881 -41.08801 -39.66934 -38.86636 -37.24840 -36.54175 -34.78461 -33.50072 -32.02965 -31.49688 -30.50186 -28.58678 -27.08837 -25.30715 -24.58145 -23.85077 -22.80481 -22.04092 -21.14212 -19.44644 -19.22140 -18.93688 -17.96378 -17.55342 -17.16640 -16.78985 -16.65202 -16.54567 -16.21833 -15.92395 -15.56548 -15.30549 -15.07880 -14.68012 -14.58389 -14.48934 -14.37430 -13.97450 -13.71464 -13.53359 -13.35747 -12.85294 -12.66367 -12.59911 -12.49893 -12.38382 -12.25168 -11.99343 -11.88894 -11.82133 -11.61447 -11.14278 -10.89675 -10.71409 -10.42112 -10.04536 -9.20636 -8.41549 -6.50879 0.16022 0.30865 0.65033 1.29264 1.32955 1.39973 1.46015 2.05842 2.18170 2.26170 2.33072 2.60049 2.91451 3.09799 3.26636 3.61416 3.85880 3.89892 4.15973 4.26589 4.28390 4.33178 4.38362 4.43321 4.48626 4.49909 4.60871 4.68898 4.75669 4.76477 4.84722 4.96157 5.01252 5.07874 5.14744 5.24704 5.28097 5.29794 5.46114 5.67060 5.83048 6.03399 6.21572 6.39511 6.45887 6.48465 7.08738 7.19949 8.75315 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.004519 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.557350 B = 6194.790144 C = 7213.225794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C 0.184 3.816 4 C -0.143 4.143 5 C -0.070 4.070 6 C -0.168 4.168 7 C 0.130 3.870 8 O -0.335 6.335 9 C 0.015 3.985 10 C -0.203 4.203 11 C -0.048 4.048 12 N -0.697 5.697 13 C 0.702 3.298 14 O -0.579 6.579 15 N -0.568 5.568 16 C 0.228 3.772 17 C -0.551 4.551 18 H 0.027 0.973 19 C 0.019 3.981 20 N -0.937 5.937 21 Si 0.947 3.053 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.244 1.244 25 C 0.524 3.476 26 O -0.495 6.495 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.451 0.549 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -22.813 -8.058 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C 0.093 3.907 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.186 4.186 7 C 0.084 3.916 8 O -0.249 6.249 9 C -0.079 4.079 10 C -0.221 4.221 11 C -0.067 4.067 12 N -0.362 5.362 13 C 0.403 3.597 14 O -0.456 6.456 15 N -0.311 5.311 16 C 0.108 3.892 17 C -0.589 4.589 18 H 0.045 0.955 19 C -0.180 4.180 20 N -0.576 5.576 21 Si 0.768 3.232 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.168 1.168 25 C 0.312 3.688 26 O -0.366 6.366 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.298 0.702 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.138 -22.146 -7.690 24.506 hybrid contribution -0.345 1.052 0.218 1.129 sum 6.793 -21.094 -7.472 23.386 Atomic orbital electron populations 1.21849 0.94830 1.03768 1.01131 1.21904 0.96752 0.89191 1.06624 1.20211 0.91550 0.95530 0.83390 1.19372 0.91848 0.98222 1.05032 1.20811 0.94059 0.96808 0.97177 1.20491 0.92814 0.99939 1.05392 1.19219 0.83128 0.94477 0.94749 1.86067 1.15385 1.48611 1.74817 1.23414 0.97331 0.88612 0.98506 1.21515 0.95588 1.00268 1.04734 1.21102 0.93101 0.97306 0.95153 1.45400 1.52101 1.29093 1.09652 1.15984 0.80136 0.82070 0.81524 1.90933 1.46891 1.41147 1.66624 1.46474 1.47514 1.28854 1.08301 1.19582 0.93659 0.86620 0.89378 1.21277 1.01983 1.04718 1.30915 0.95509 1.25827 1.02188 0.93987 0.96046 1.70029 1.38826 1.09954 1.38745 0.85725 0.78744 0.78878 0.79826 1.18124 1.19652 1.16752 1.21325 0.76434 0.80049 0.90963 1.90688 1.55805 1.68759 1.21371 0.92297 0.88743 0.95477 0.85921 0.87985 0.86780 0.84963 0.90687 0.91838 0.86395 0.81831 0.82234 0.70153 0.93088 0.92989 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.38 71.98 0.68 -2.37 16 2 C -0.11 -1.89 4.54 30.59 0.14 -1.75 16 3 C 0.18 5.03 0.95 2.24 0.00 5.03 16 4 C -0.14 -3.81 4.93 -19.85 -0.10 -3.90 16 5 C -0.07 -2.07 9.34 22.26 0.21 -1.87 16 6 C -0.17 -4.66 9.99 22.37 0.22 -4.44 16 7 C 0.13 3.14 6.69 22.51 0.15 3.29 16 8 O -0.34 -7.35 10.50 -92.47 -0.97 -8.32 16 9 C 0.02 0.18 9.81 113.37 1.11 1.30 16 10 C -0.20 -3.99 9.04 22.37 0.20 -3.78 16 11 C -0.05 -1.02 9.17 22.26 0.20 -0.82 16 12 N -0.70 -19.68 3.73 -443.26 -1.65 -21.33 16 13 C 0.70 28.65 8.52 179.44 1.53 30.18 16 14 O -0.58 -27.90 17.48 -3.85 -0.07 -27.96 16 15 N -0.57 -25.44 2.59 -777.21 -2.01 -27.45 16 16 C 0.23 11.75 4.52 85.63 0.39 12.14 16 17 C -0.55 -33.86 9.94 25.60 0.25 -33.60 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 19 C 0.02 1.14 5.47 84.66 0.46 1.61 16 20 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 21 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 25 C 0.52 20.69 5.89 87.94 0.52 21.21 16 26 O -0.49 -21.86 17.76 -2.89 -0.05 -21.91 16 27 H 0.06 1.17 7.47 -2.39 -0.02 1.16 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.03 0.67 7.35 -2.39 -0.02 0.65 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.61 6.89 -2.39 -0.02 1.59 16 32 H 0.11 3.70 7.31 -2.91 -0.02 3.68 16 33 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.07 0.61 7.65 -2.39 -0.02 0.59 16 35 H 0.06 0.69 7.67 -2.39 -0.02 0.67 16 36 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.16 2.06 6.30 -2.91 -0.02 2.04 16 38 H 0.16 2.43 6.43 -2.91 -0.02 2.41 16 39 H 0.45 9.46 8.96 -92.71 -0.83 8.63 16 40 H 0.05 2.62 6.92 -2.39 -0.02 2.60 16 41 H 0.05 2.58 7.43 -2.39 -0.02 2.56 16 42 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -83.35 351.65 3.58 -79.77 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.18 Total: 18.33 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 5.97 Total: 22.23 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -3.36 Total: -108.59 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -1.09 Total: -58.20 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -83.35 3.58 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005264147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.034 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds