Wall clock time and date at job start Tue Mar 31 2020 13:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.50691 * 110.53542 * 177.87018 * 3 2 1 5 5 C 1.38274 * 119.94368 * 31.85987 * 4 3 2 6 6 C 1.38140 * 120.05238 * 179.72550 * 5 4 3 7 7 C 1.38735 * 119.94585 * 0.56637 * 6 5 4 8 8 O 1.35900 * 120.05637 * 179.68333 * 7 6 5 9 9 C 1.42906 * 117.00081 * 0.02562 * 8 7 6 10 10 C 1.38728 * 119.88905 * 359.70629 * 7 6 5 11 11 C 1.38149 * 119.94263 * 359.97438 * 10 7 6 12 12 N 1.47312 * 110.59912 * 54.87322 * 3 2 1 13 13 C 1.34524 * 106.62329 * 241.25570 * 12 3 2 14 14 O 1.21540 * 123.77569 * 180.20973 * 13 12 3 15 15 N 1.33794 * 112.45351 * 0.37953 * 13 12 3 16 16 C 1.46506 * 124.17387 * 179.86917 * 15 13 12 17 17 C 1.50698 * 109.47006 * 269.69566 * 16 15 13 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.34763 * 111.64654 * 359.60031 * 15 13 12 26 26 O 1.21235 * 127.15783 * 180.19614 * 25 15 13 27 27 H 1.08996 * 109.46832 * 60.00072 * 1 2 3 28 28 H 1.09000 * 109.46680 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46552 * 299.99839 * 1 2 3 30 30 H 1.09003 * 109.46789 * 240.00297 * 2 1 3 31 31 H 1.08996 * 109.46832 * 119.99928 * 2 1 3 32 32 H 1.08000 * 119.96764 * 359.97157 * 5 4 3 33 33 H 1.08002 * 120.02811 * 180.24956 * 6 5 4 34 34 H 1.09006 * 109.46761 * 300.00204 * 9 8 7 35 35 H 1.08996 * 109.47207 * 59.99285 * 9 8 7 36 36 H 1.08999 * 109.47296 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.02638 * 180.02562 * 10 7 6 38 38 H 1.08004 * 119.97114 * 180.02562 * 11 10 7 39 39 H 0.97007 * 126.68932 * 61.43146 * 12 3 2 40 40 H 1.09001 * 109.47068 * 149.70231 * 16 15 13 41 41 H 1.08993 * 109.47068 * 29.69685 * 16 15 13 42 42 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5459 1.4707 0.0524 5 6 4.2763 0.4585 -0.5423 6 6 5.6568 0.4851 -0.5005 7 6 6.3101 1.5224 0.1491 8 8 7.6680 1.5475 0.1971 9 6 8.3598 0.4733 -0.4431 10 6 5.5749 2.5339 0.7498 11 6 4.1946 2.5062 0.6995 12 7 1.4649 2.1956 1.1278 13 6 0.7548 3.2057 0.5938 14 8 0.1487 4.0278 1.2525 15 7 0.7876 3.2021 -0.7438 16 6 0.1010 4.1845 -1.5864 17 6 -1.2856 3.6891 -1.9074 18 1 -1.6219 2.7378 -1.5220 19 6 -2.1252 4.4506 -2.6923 20 7 -1.7159 5.6091 -3.1613 21 14 -3.8441 3.8369 -3.0897 22 1 -4.5401 4.8325 -3.9439 23 1 -4.6058 3.6471 -1.8290 24 1 -3.7530 2.5429 -3.8125 25 6 1.5348 2.1868 -1.2200 26 8 1.7563 1.9231 -2.3824 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.7671 -0.3515 -1.0433 33 1 6.2270 -0.3037 -0.9686 34 1 8.0678 -0.4714 0.0156 35 1 8.1044 0.4569 -1.5026 36 1 9.4347 0.6148 -0.3301 37 1 6.0812 3.3427 1.2557 38 1 3.6217 3.2936 1.1667 39 1 1.5782 2.0025 2.0717 40 1 0.6603 4.3237 -2.5115 41 1 0.0337 5.1342 -1.0560 42 1 -0.8234 5.9280 -2.9546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005264149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:46 Heat of formation + Delta-G solvation = -55.020382 kcal Electronic energy + Delta-G solvation = -27369.971747 eV Core-core repulsion = 23509.407158 eV Total energy + Delta-G solvation = -3860.564588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.24846 -40.24603 -38.20208 -37.73208 -35.92426 -34.90291 -33.12818 -32.09840 -31.14883 -30.53660 -27.96043 -27.47737 -25.90795 -23.65334 -23.33321 -22.63532 -21.93102 -20.83482 -19.82537 -18.48377 -17.62961 -17.15357 -16.57765 -16.41882 -16.04082 -15.98403 -15.27898 -14.93403 -14.82082 -14.34060 -14.13822 -13.95556 -13.71362 -13.70967 -13.52329 -13.21743 -12.92282 -12.65034 -12.54504 -12.16151 -11.72941 -11.68047 -11.52689 -11.37730 -11.22662 -11.17667 -10.90665 -10.68730 -10.20826 -10.08203 -9.67045 -9.62483 -9.28984 -9.18379 -8.46724 -8.37726 -8.30954 -6.48538 -4.21193 1.09604 1.16052 2.15434 2.86016 2.99181 3.41624 3.42844 3.44792 3.57642 3.63442 3.72699 4.26692 4.41366 4.49646 4.56422 4.66414 4.71135 4.83121 4.86961 5.12902 5.14006 5.20387 5.28013 5.30272 5.30968 5.44562 5.64725 5.74539 5.83507 5.88389 6.01466 6.03992 6.12983 6.33636 6.36813 6.45753 6.50158 6.79544 6.87533 7.10141 7.12324 7.81391 7.82347 7.98883 8.28586 8.64413 8.75384 9.47503 10.90354 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.003603 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.863778 B = 7770.166869 C = 7888.902530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.111 4.111 3 C 0.167 3.833 4 C -0.124 4.124 5 C -0.053 4.053 6 C -0.207 4.207 7 C 0.131 3.869 8 O -0.318 6.318 9 C 0.027 3.973 10 C -0.150 4.150 11 C -0.060 4.060 12 N -0.728 5.728 13 C 0.703 3.297 14 O -0.539 6.539 15 N -0.552 5.552 16 C 0.239 3.761 17 C -0.612 4.612 18 H 0.055 0.945 19 C 0.025 3.975 20 N -0.903 5.903 21 Si 1.074 2.926 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.535 3.465 26 O -0.467 6.467 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.432 0.568 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.032 -14.069 8.338 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.150 4.150 3 C 0.075 3.925 4 C -0.126 4.126 5 C -0.072 4.072 6 C -0.226 4.226 7 C 0.086 3.914 8 O -0.231 6.231 9 C -0.069 4.069 10 C -0.169 4.169 11 C -0.078 4.078 12 N -0.393 5.393 13 C 0.404 3.596 14 O -0.412 6.412 15 N -0.295 5.295 16 C 0.121 3.879 17 C -0.651 4.651 18 H 0.073 0.927 19 C -0.180 4.180 20 N -0.538 5.538 21 Si 0.901 3.099 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.320 3.680 26 O -0.337 6.337 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.276 0.724 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.475 -13.111 7.216 21.528 hybrid contribution 1.507 -0.723 1.112 2.008 sum 16.983 -13.835 8.328 23.434 Atomic orbital electron populations 1.21848 0.94169 1.02366 1.03397 1.21753 0.97449 0.91992 1.03763 1.20139 0.91032 0.94750 0.86564 1.19417 0.92470 0.97350 1.03320 1.20831 0.92947 0.97394 0.95994 1.21190 0.95331 1.00362 1.05695 1.19086 0.82367 0.94644 0.95333 1.86072 1.16014 1.47609 1.73418 1.23072 0.97207 0.89239 0.97335 1.20382 0.93012 0.99283 1.04176 1.20845 0.93307 0.97016 0.96619 1.45622 1.54595 1.30732 1.08373 1.15928 0.79487 0.81839 0.82375 1.90969 1.46065 1.40774 1.63415 1.46578 1.46071 1.29529 1.07314 1.19635 0.92876 0.86523 0.88819 1.22077 0.98459 1.08137 1.36380 0.92674 1.25841 1.04890 0.94112 0.93141 1.70810 1.20842 1.19037 1.43077 0.83479 0.74299 0.75598 0.76555 1.20458 1.21213 1.21241 1.20352 0.77721 0.80638 0.89327 1.90726 1.57388 1.67759 1.17780 0.91811 0.91790 0.91985 0.89540 0.90000 0.84891 0.85104 0.92584 0.92464 0.88258 0.84904 0.85053 0.72417 0.94128 0.93828 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.39 37.16 0.35 -1.86 16 2 C -0.11 -1.33 4.64 -26.73 -0.12 -1.45 16 3 C 0.17 2.44 0.95 -133.25 -0.13 2.31 16 4 C -0.12 -1.62 4.93 -104.60 -0.52 -2.13 16 5 C -0.05 -0.61 9.17 -39.60 -0.36 -0.97 16 6 C -0.21 -2.15 9.04 -39.43 -0.36 -2.51 16 7 C 0.13 1.48 6.69 -39.22 -0.26 1.22 16 8 O -0.32 -3.30 10.50 -19.43 -0.20 -3.50 16 9 C 0.03 0.17 9.81 101.05 0.99 1.16 16 10 C -0.15 -1.76 9.99 -39.43 -0.39 -2.16 16 11 C -0.06 -0.76 9.35 -39.61 -0.37 -1.13 16 12 N -0.73 -10.69 3.84 -54.03 -0.21 -10.90 16 13 C 0.70 14.36 8.53 -88.02 -0.75 13.61 16 14 O -0.54 -12.90 17.48 5.33 0.09 -12.81 16 15 N -0.55 -12.37 2.59 -122.02 -0.32 -12.69 16 16 C 0.24 6.37 4.77 -5.19 -0.02 6.35 16 17 C -0.61 -17.67 9.39 -34.44 -0.32 -18.00 16 18 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 19 C 0.03 0.73 5.46 -17.82 -0.10 0.64 16 20 N -0.90 -27.44 13.65 55.43 0.76 -26.68 16 21 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.53 10.74 5.75 -10.56 -0.06 10.68 16 26 O -0.47 -10.54 17.76 5.60 0.10 -10.44 16 27 H 0.06 1.11 7.26 -51.93 -0.38 0.74 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 30 H 0.09 0.97 6.72 -51.93 -0.35 0.62 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.13 1.31 6.35 -52.49 -0.33 0.98 16 33 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 34 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 35 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.68 7.32 -52.48 -0.38 1.29 16 39 H 0.43 4.92 8.96 -40.82 -0.37 4.55 16 40 H 0.04 1.12 7.87 -51.93 -0.41 0.71 16 41 H 0.04 1.22 7.72 -51.93 -0.40 0.82 16 42 H 0.27 8.08 7.22 -40.82 -0.29 7.79 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -35.33 353.75 -7.29 -42.62 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.33 Total: 2.83 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.43 Total: 5.76 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.23 Total: -50.27 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.01 Total: -26.75 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.33 -7.29 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005264149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.402 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds