Wall clock time and date at job start Tue Mar 31 2020 13:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.50691 * 110.53542 * 177.87018 * 3 2 1 5 5 C 1.38274 * 119.94368 * 31.85987 * 4 3 2 6 6 C 1.38140 * 120.05238 * 179.72550 * 5 4 3 7 7 C 1.38735 * 119.94585 * 0.56637 * 6 5 4 8 8 O 1.35900 * 120.05637 * 179.68333 * 7 6 5 9 9 C 1.42906 * 117.00081 * 0.02562 * 8 7 6 10 10 C 1.38728 * 119.88905 * 359.70629 * 7 6 5 11 11 C 1.38149 * 119.94263 * 359.97438 * 10 7 6 12 12 N 1.47312 * 110.59912 * 54.87322 * 3 2 1 13 13 C 1.34524 * 106.62329 * 241.25570 * 12 3 2 14 14 O 1.21540 * 123.77569 * 180.20973 * 13 12 3 15 15 N 1.33794 * 112.45351 * 0.37953 * 13 12 3 16 16 C 1.46506 * 124.17387 * 179.86917 * 15 13 12 17 17 C 1.50698 * 109.47006 * 269.69566 * 16 15 13 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.34763 * 111.64654 * 359.60031 * 15 13 12 26 26 O 1.21235 * 127.15783 * 180.19614 * 25 15 13 27 27 H 1.08996 * 109.46832 * 60.00072 * 1 2 3 28 28 H 1.09000 * 109.46680 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46552 * 299.99839 * 1 2 3 30 30 H 1.09003 * 109.46789 * 240.00297 * 2 1 3 31 31 H 1.08996 * 109.46832 * 119.99928 * 2 1 3 32 32 H 1.08000 * 119.96764 * 359.97157 * 5 4 3 33 33 H 1.08002 * 120.02811 * 180.24956 * 6 5 4 34 34 H 1.09006 * 109.46761 * 300.00204 * 9 8 7 35 35 H 1.08996 * 109.47207 * 59.99285 * 9 8 7 36 36 H 1.08999 * 109.47296 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.02638 * 180.02562 * 10 7 6 38 38 H 1.08004 * 119.97114 * 180.02562 * 11 10 7 39 39 H 0.97007 * 126.68932 * 61.43146 * 12 3 2 40 40 H 1.09001 * 109.47068 * 149.70231 * 16 15 13 41 41 H 1.08993 * 109.47068 * 29.69685 * 16 15 13 42 42 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5459 1.4707 0.0524 5 6 4.2763 0.4585 -0.5423 6 6 5.6568 0.4851 -0.5005 7 6 6.3101 1.5224 0.1491 8 8 7.6680 1.5475 0.1971 9 6 8.3598 0.4733 -0.4431 10 6 5.5749 2.5339 0.7498 11 6 4.1946 2.5062 0.6995 12 7 1.4649 2.1956 1.1278 13 6 0.7548 3.2057 0.5938 14 8 0.1487 4.0278 1.2525 15 7 0.7876 3.2021 -0.7438 16 6 0.1010 4.1845 -1.5864 17 6 -1.2856 3.6891 -1.9074 18 1 -1.6219 2.7378 -1.5220 19 6 -2.1252 4.4506 -2.6923 20 7 -1.7159 5.6091 -3.1613 21 14 -3.8441 3.8369 -3.0897 22 1 -4.5401 4.8325 -3.9439 23 1 -4.6058 3.6471 -1.8290 24 1 -3.7530 2.5429 -3.8125 25 6 1.5348 2.1868 -1.2200 26 8 1.7563 1.9231 -2.3824 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.7671 -0.3515 -1.0433 33 1 6.2270 -0.3037 -0.9686 34 1 8.0678 -0.4714 0.0156 35 1 8.1044 0.4569 -1.5026 36 1 9.4347 0.6148 -0.3301 37 1 6.0812 3.3427 1.2557 38 1 3.6217 3.2936 1.1667 39 1 1.5782 2.0025 2.0717 40 1 0.6603 4.3237 -2.5115 41 1 0.0337 5.1342 -1.0560 42 1 -0.8234 5.9280 -2.9546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005264149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:45 Heat of formation + Delta-G solvation = -79.192444 kcal Electronic energy + Delta-G solvation = -27371.019926 eV Core-core repulsion = 23509.407158 eV Total energy + Delta-G solvation = -3861.612768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.76140 -41.11037 -39.73337 -38.90153 -37.30093 -36.71599 -35.02305 -33.49052 -32.05310 -31.50544 -29.57330 -28.57405 -27.05310 -25.61147 -24.65607 -23.88142 -22.86391 -22.31805 -21.23905 -19.50841 -19.21003 -18.91688 -18.02556 -17.70751 -17.19613 -16.70184 -16.60274 -16.53864 -16.13664 -15.71439 -15.57179 -15.41280 -15.20529 -14.85361 -14.59850 -14.50612 -14.35488 -13.92573 -13.74783 -13.53680 -13.42018 -12.88131 -12.71445 -12.57127 -12.54317 -12.38541 -12.04724 -11.97198 -11.89070 -11.69171 -11.63086 -11.20532 -10.70226 -10.69075 -10.37255 -10.06865 -9.23160 -8.83222 -6.57687 0.13774 0.28774 0.58077 1.31432 1.48355 1.57069 1.77348 1.99952 2.10510 2.31677 2.49350 2.57313 3.00257 3.05746 3.21239 3.56130 3.82897 3.88244 4.09445 4.20801 4.23662 4.29701 4.34335 4.42365 4.44506 4.46867 4.57439 4.67450 4.69460 4.75629 4.78345 4.89411 4.97325 5.01672 5.12102 5.24326 5.27001 5.44076 5.57403 5.63787 5.77151 5.93409 6.17568 6.29693 6.37470 6.42006 7.09066 7.22149 8.55566 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.003603 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.863778 B = 7770.166869 C = 7888.902530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C 0.185 3.815 4 C -0.142 4.142 5 C -0.051 4.051 6 C -0.202 4.202 7 C 0.131 3.869 8 O -0.333 6.333 9 C 0.015 3.985 10 C -0.162 4.162 11 C -0.068 4.068 12 N -0.695 5.695 13 C 0.701 3.299 14 O -0.582 6.582 15 N -0.568 5.568 16 C 0.251 3.749 17 C -0.626 4.626 18 H 0.050 0.950 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.120 2.880 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.267 1.267 25 C 0.524 3.476 26 O -0.499 6.499 27 H 0.017 0.983 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.452 0.548 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.333 -17.394 9.058 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C 0.095 3.905 4 C -0.144 4.144 5 C -0.069 4.069 6 C -0.221 4.221 7 C 0.085 3.915 8 O -0.246 6.246 9 C -0.079 4.079 10 C -0.180 4.180 11 C -0.087 4.087 12 N -0.361 5.361 13 C 0.402 3.598 14 O -0.459 6.459 15 N -0.311 5.311 16 C 0.131 3.869 17 C -0.663 4.663 18 H 0.068 0.932 19 C -0.223 4.223 20 N -0.558 5.558 21 Si 0.940 3.060 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.192 1.192 25 C 0.312 3.688 26 O -0.371 6.371 27 H 0.037 0.963 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.299 0.701 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.852 -16.497 7.985 24.898 hybrid contribution 1.301 0.294 0.876 1.596 sum 18.153 -16.203 8.861 25.896 Atomic orbital electron populations 1.21849 0.95641 1.03520 1.00717 1.21900 0.95975 0.89891 1.06659 1.20165 0.92287 0.95259 0.82833 1.19299 0.90922 0.98753 1.05379 1.21074 0.93456 0.97209 0.95142 1.21496 0.95065 1.00640 1.04884 1.19243 0.83088 0.94482 0.94684 1.86067 1.15461 1.49330 1.73775 1.23406 0.97987 0.88880 0.97599 1.20507 0.92768 1.00064 1.04683 1.20820 0.93862 0.96855 0.97145 1.45391 1.52541 1.28625 1.09519 1.15994 0.79728 0.82489 0.81566 1.90930 1.48229 1.42716 1.63979 1.46545 1.46639 1.29810 1.08097 1.19109 0.92467 0.86902 0.88441 1.22347 0.99552 1.07999 1.36449 0.93177 1.27451 1.08740 0.93594 0.92535 1.70924 1.20432 1.20137 1.44270 0.82919 0.69832 0.75969 0.77318 1.19928 1.19519 1.19183 1.21360 0.76639 0.80075 0.90714 1.90684 1.58334 1.68436 1.19605 0.96330 0.88773 0.92743 0.88037 0.85545 0.82916 0.82106 0.90943 0.91797 0.86337 0.84206 0.86000 0.70054 0.96063 0.96144 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.39 71.99 0.68 -3.45 16 2 C -0.11 -2.20 4.64 30.60 0.14 -2.06 16 3 C 0.19 5.17 0.95 2.23 0.00 5.17 16 4 C -0.14 -3.44 4.93 -19.85 -0.10 -3.53 16 5 C -0.05 -0.99 9.17 22.26 0.20 -0.78 16 6 C -0.20 -3.49 9.04 22.37 0.20 -3.29 16 7 C 0.13 2.65 6.69 22.51 0.15 2.80 16 8 O -0.33 -6.06 10.50 -92.42 -0.97 -7.03 16 9 C 0.02 0.14 9.81 113.37 1.11 1.25 16 10 C -0.16 -3.60 9.99 22.37 0.22 -3.38 16 11 C -0.07 -1.67 9.35 22.25 0.21 -1.47 16 12 N -0.69 -19.95 3.84 -443.26 -1.70 -21.65 16 13 C 0.70 29.54 8.53 179.44 1.53 31.07 16 14 O -0.58 -28.99 17.48 -3.84 -0.07 -29.06 16 15 N -0.57 -26.62 2.59 -777.21 -2.01 -28.63 16 16 C 0.25 14.20 4.77 85.63 0.41 14.60 16 17 C -0.63 -37.53 9.39 25.60 0.24 -37.29 16 18 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 19 C -0.02 -1.43 5.46 84.65 0.46 -0.97 16 20 N -0.92 -57.91 13.65 21.45 0.29 -57.62 16 21 Si 1.12 51.64 29.90 68.60 2.05 53.69 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 C 0.52 21.47 5.75 87.94 0.51 21.98 16 26 O -0.50 -23.08 17.76 -2.89 -0.05 -23.13 16 27 H 0.02 0.63 7.26 -2.39 -0.02 0.61 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.46 7.53 -2.39 -0.02 1.44 16 30 H 0.10 1.89 6.72 -2.39 -0.02 1.88 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.15 2.35 6.35 -2.91 -0.02 2.33 16 33 H 0.16 1.75 6.30 -2.91 -0.02 1.73 16 34 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 35 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 36 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.12 3.13 7.32 -2.91 -0.02 3.11 16 39 H 0.45 9.53 8.96 -92.70 -0.83 8.70 16 40 H 0.02 1.27 7.87 -2.39 -0.02 1.25 16 41 H 0.02 1.24 7.72 -2.39 -0.02 1.22 16 42 H 0.26 16.28 7.22 -92.71 -0.67 15.61 16 Total: -1.00 -81.37 353.75 3.85 -77.53 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.25 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.97 Total: 20.66 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.42 Total: -107.90 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.09 Total: -59.22 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -81.37 3.85 -77.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005264149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.664 kcal (2) G-P(sol) polarization free energy of solvation -81.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds