Wall clock time and date at job start Tue Mar 31 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48497 * 109.47019 * 269.99624 * 3 2 1 5 5 H 1.48494 * 109.47524 * 29.99900 * 3 2 1 6 6 H 1.48506 * 109.46941 * 149.99913 * 3 2 1 7 7 C 1.38653 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.35752 * 116.99653 * 174.96252 * 9 7 2 11 11 C 1.38969 * 120.03279 * 5.36692 * 10 9 7 12 12 C 1.38130 * 120.08293 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14569 * 359.74243 * 12 11 10 14 14 C 1.38978 * 120.05902 * 0.51235 * 13 12 11 15 15 N 1.39725 * 120.04497 * 179.76908 * 14 13 12 16 16 C 1.34775 * 120.00167 * 214.86339 * 15 14 13 17 17 O 1.21371 * 119.99763 * 355.48549 * 16 15 14 18 18 C 1.49352 * 119.99950 * 175.49113 * 16 15 14 19 19 O 1.21361 * 119.99810 * 359.97438 * 18 16 15 20 20 N 1.34775 * 119.99954 * 179.97438 * 18 16 15 21 21 C 1.46502 * 119.99755 * 179.72228 * 20 18 16 22 22 C 1.53001 * 109.46834 * 180.27605 * 21 20 18 23 23 C 1.53780 * 113.61505 * 274.13723 * 22 21 20 24 24 C 1.53950 * 87.02262 * 220.04752 * 23 22 21 25 25 C 1.53784 * 113.61463 * 176.53130 * 22 21 20 26 26 C 1.38714 * 120.03068 * 185.33975 * 10 9 7 27 27 H 0.96994 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.95535 * 359.95200 * 11 10 9 29 29 H 1.07997 * 119.93059 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.97212 * 180.25616 * 13 12 11 31 31 H 0.97001 * 119.99750 * 34.84878 * 15 14 13 32 32 H 0.96997 * 120.00177 * 359.97438 * 20 18 16 33 33 H 1.08997 * 109.47326 * 300.27720 * 21 20 18 34 34 H 1.08994 * 109.47112 * 60.28126 * 21 20 18 35 35 H 1.09001 * 112.85101 * 45.33241 * 22 21 20 36 36 H 1.09005 * 113.61592 * 334.57104 * 23 22 21 37 37 H 1.09001 * 113.61372 * 105.47224 * 23 22 21 38 38 H 1.08999 * 113.54492 * 270.81598 * 24 23 22 39 39 H 1.09003 * 113.66782 * 139.92831 * 24 23 22 40 40 H 1.09003 * 113.61327 * 254.53019 * 25 22 21 41 41 H 1.08998 * 113.61356 * 25.35170 * 25 22 21 42 42 H 1.08006 * 120.07195 * 0.04881 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2006 0.0011 10 6 3.9735 -2.4055 0.1078 11 6 3.2220 -3.5744 0.0978 12 6 3.8481 -4.8009 0.2058 13 6 5.2236 -4.8705 0.3187 14 6 5.9806 -3.7050 0.3347 15 7 7.3709 -3.7755 0.4537 16 6 8.0374 -2.8268 1.1410 17 8 7.4408 -1.8683 1.5865 18 6 9.5101 -2.9549 1.3541 19 8 10.1065 -3.9135 0.9089 20 7 10.1766 -2.0060 2.0409 21 6 11.6201 -2.1347 2.2552 22 6 12.1246 -0.9370 3.0627 23 6 12.4732 0.2860 2.1981 24 6 13.6902 0.4894 3.1187 25 6 13.6191 -1.0178 3.4160 26 6 5.3540 -2.4710 0.2263 27 1 -0.4850 0.8400 -0.0004 28 1 2.1472 -3.5237 0.0059 29 1 3.2617 -5.7078 0.1974 30 1 5.7105 -5.8311 0.3988 31 1 7.8565 -4.5073 0.0419 32 1 9.7000 -1.2396 2.3964 33 1 11.8256 -3.0545 2.8027 34 1 12.1293 -2.1638 1.2919 35 1 11.4866 -0.7019 3.9146 36 1 12.7394 0.0336 1.1716 37 1 11.7384 1.0886 2.2607 38 1 13.4805 1.1158 3.9857 39 1 14.5948 0.7876 2.5886 40 1 13.8081 -1.2662 4.4604 41 1 14.1990 -1.6285 2.7240 42 1 5.9402 -1.5639 0.2346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042020510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:27 Heat of formation + Delta-G solvation = -44.755265 kcal Electronic energy + Delta-G solvation = -25322.548577 eV Core-core repulsion = 21462.429117 eV Total energy + Delta-G solvation = -3860.119460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99428 -39.72615 -39.06058 -38.36607 -36.78843 -35.10879 -34.04824 -32.38736 -29.88378 -29.22911 -28.68013 -26.08013 -25.41224 -24.91355 -23.07809 -22.09496 -21.25288 -20.52593 -19.76922 -18.74653 -18.09786 -17.42794 -16.84373 -16.31959 -16.08299 -15.50747 -15.47207 -15.26330 -14.85786 -14.77788 -14.32893 -13.95610 -13.91259 -13.68688 -13.39283 -12.94259 -12.90301 -12.47327 -12.43381 -12.31728 -12.13718 -11.78765 -11.73511 -11.17704 -11.08063 -11.00609 -10.87923 -10.82112 -10.73338 -10.20921 -9.94366 -9.67251 -9.51925 -9.30772 -8.87745 -7.91631 -7.37450 -6.42049 -4.08868 1.17392 1.99488 2.18179 2.27156 3.14094 3.24800 3.26698 3.43852 3.48803 4.10391 4.15053 4.21775 4.25219 4.34045 4.40826 4.46713 4.77735 4.87044 4.98529 5.10498 5.22721 5.29091 5.29823 5.44491 5.49467 5.51912 5.56527 5.67781 5.73152 5.91556 5.97055 6.03525 6.04207 6.18650 6.36717 6.57952 6.83636 6.91421 7.05886 7.26713 7.35677 7.48972 7.64963 7.78315 7.94738 8.03307 8.93106 9.55123 10.65221 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002812 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.219512 B = 9954.738769 C =11795.743590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.172 3.828 11 C -0.227 4.227 12 C -0.059 4.059 13 C -0.220 4.220 14 C 0.166 3.834 15 N -0.636 5.636 16 C 0.499 3.501 17 O -0.492 6.492 18 C 0.512 3.488 19 O -0.522 6.522 20 N -0.699 5.699 21 C 0.127 3.873 22 C -0.128 4.128 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.186 4.186 27 H 0.280 0.720 28 H 0.136 0.864 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.419 0.581 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.491 -3.869 4.966 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.119 3.881 11 C -0.247 4.247 12 C -0.078 4.078 13 C -0.241 4.241 14 C 0.073 3.927 15 N -0.283 5.283 16 C 0.280 3.720 17 O -0.366 6.366 18 C 0.293 3.707 19 O -0.398 6.398 20 N -0.353 5.353 21 C 0.004 3.996 22 C -0.147 4.147 23 C -0.177 4.177 24 C -0.180 4.180 25 C -0.168 4.168 26 C -0.207 4.207 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 24.425 -3.479 4.974 25.168 hybrid contribution 0.086 0.594 -0.012 0.600 sum 24.511 -2.885 4.962 25.174 Atomic orbital electron populations 1.69643 1.05555 1.28544 1.47845 1.24460 0.95020 0.98855 0.95562 0.86202 0.80519 0.81395 0.79016 1.19859 1.20772 1.18120 1.20788 0.76780 0.96698 1.52198 0.87474 1.83581 1.22655 1.25512 1.79940 1.18836 0.91062 0.85656 0.92547 1.21348 1.01398 0.91789 1.10158 1.20580 0.93278 0.96984 0.96964 1.20386 0.93994 0.95791 1.13961 1.17156 0.80499 0.93939 1.01090 1.43001 1.06262 1.27587 1.51428 1.20133 0.87986 0.83858 0.79998 1.90844 1.68588 1.29547 1.47583 1.20077 0.87945 0.83251 0.79469 1.90760 1.69377 1.30855 1.48813 1.45759 1.09517 1.25250 1.54734 1.21536 0.79047 0.98648 1.00331 1.22866 0.97441 0.95057 0.99294 1.23060 0.98261 0.97754 0.98575 1.22837 0.98718 0.96455 0.99996 1.22870 0.94771 0.97100 1.02049 1.20145 0.92452 0.97243 1.10834 0.91017 0.84660 0.86484 0.86832 0.74420 0.74848 0.90774 0.90723 0.88228 0.89774 0.91036 0.90042 0.91249 0.91061 0.89680 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.48 0.77 -24.60 16 2 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 3 Si 0.90 21.95 28.62 -169.99 -4.86 17.09 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.39 -11.00 9.95 30.89 0.31 -10.70 16 8 H 0.11 3.06 5.43 -52.49 -0.29 2.77 16 9 O -0.21 -5.71 8.58 0.03 0.00 -5.71 16 10 C 0.17 4.06 6.64 -39.13 -0.26 3.80 16 11 C -0.23 -4.85 9.17 -39.35 -0.36 -5.21 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 13 C -0.22 -3.61 9.97 -39.33 -0.39 -4.00 16 14 C 0.17 2.95 6.29 -83.77 -0.53 2.42 16 15 N -0.64 -9.32 5.32 -10.31 -0.05 -9.38 16 16 C 0.50 7.47 7.73 -11.63 -0.09 7.38 16 17 O -0.49 -8.76 13.91 5.48 0.08 -8.68 16 18 C 0.51 6.47 7.89 -11.63 -0.09 6.38 16 19 O -0.52 -7.30 16.48 5.49 0.09 -7.21 16 20 N -0.70 -6.89 5.55 -60.76 -0.34 -7.23 16 21 C 0.13 0.98 5.50 -4.04 -0.02 0.96 16 22 C -0.13 -0.76 3.75 -89.81 -0.34 -1.10 16 23 C -0.14 -0.83 7.65 -25.83 -0.20 -1.03 16 24 C -0.14 -0.74 8.09 -25.83 -0.21 -0.94 16 25 C -0.13 -0.65 7.65 -25.91 -0.20 -0.85 16 26 C -0.19 -3.94 8.64 -39.19 -0.34 -4.28 16 27 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.14 3.00 5.63 -52.49 -0.30 2.70 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.42 5.02 8.30 -40.82 -0.34 4.68 16 32 H 0.42 3.83 7.94 -40.82 -0.32 3.50 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 42 H 0.13 2.93 6.23 -52.48 -0.33 2.61 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.86 358.85 -7.44 -39.30 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.33 Total: 7.90 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.21 Total: -6.89 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.38 Total: -41.21 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.86 -7.44 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042020510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.456 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds