Wall clock time and date at job start Tue Mar 31 2020 12:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48497 * 109.47019 * 269.99624 * 3 2 1 5 5 H 1.48494 * 109.47524 * 29.99900 * 3 2 1 6 6 H 1.48506 * 109.46941 * 149.99913 * 3 2 1 7 7 C 1.38653 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 359.97438 * 7 2 1 9 9 O 1.34833 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.35752 * 116.99653 * 174.96252 * 9 7 2 11 11 C 1.38969 * 120.03279 * 5.36692 * 10 9 7 12 12 C 1.38130 * 120.08293 * 179.97438 * 11 10 9 13 13 C 1.38189 * 120.14569 * 359.74243 * 12 11 10 14 14 C 1.38978 * 120.05902 * 0.51235 * 13 12 11 15 15 N 1.39725 * 120.04497 * 179.76908 * 14 13 12 16 16 C 1.34775 * 120.00167 * 214.86339 * 15 14 13 17 17 O 1.21371 * 119.99763 * 355.48549 * 16 15 14 18 18 C 1.49352 * 119.99950 * 175.49113 * 16 15 14 19 19 O 1.21361 * 119.99810 * 359.97438 * 18 16 15 20 20 N 1.34775 * 119.99954 * 179.97438 * 18 16 15 21 21 C 1.46502 * 119.99755 * 179.72228 * 20 18 16 22 22 C 1.53001 * 109.46834 * 180.27605 * 21 20 18 23 23 C 1.53780 * 113.61505 * 274.13723 * 22 21 20 24 24 C 1.53950 * 87.02262 * 220.04752 * 23 22 21 25 25 C 1.53784 * 113.61463 * 176.53130 * 22 21 20 26 26 C 1.38714 * 120.03068 * 185.33975 * 10 9 7 27 27 H 0.96994 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.95535 * 359.95200 * 11 10 9 29 29 H 1.07997 * 119.93059 * 180.02562 * 12 11 10 30 30 H 1.07994 * 119.97212 * 180.25616 * 13 12 11 31 31 H 0.97001 * 119.99750 * 34.84878 * 15 14 13 32 32 H 0.96997 * 120.00177 * 359.97438 * 20 18 16 33 33 H 1.08997 * 109.47326 * 300.27720 * 21 20 18 34 34 H 1.08994 * 109.47112 * 60.28126 * 21 20 18 35 35 H 1.09001 * 112.85101 * 45.33241 * 22 21 20 36 36 H 1.09005 * 113.61592 * 334.57104 * 23 22 21 37 37 H 1.09001 * 113.61372 * 105.47224 * 23 22 21 38 38 H 1.08999 * 113.54492 * 270.81598 * 24 23 22 39 39 H 1.09003 * 113.66782 * 139.92831 * 24 23 22 40 40 H 1.09003 * 113.61327 * 254.53019 * 25 22 21 41 41 H 1.08998 * 113.61356 * 25.35170 * 25 22 21 42 42 H 1.08006 * 120.07195 * 0.04881 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3572 -1.2006 0.0011 10 6 3.9735 -2.4055 0.1078 11 6 3.2220 -3.5744 0.0978 12 6 3.8481 -4.8009 0.2058 13 6 5.2236 -4.8705 0.3187 14 6 5.9806 -3.7050 0.3347 15 7 7.3709 -3.7755 0.4537 16 6 8.0374 -2.8268 1.1410 17 8 7.4408 -1.8683 1.5865 18 6 9.5101 -2.9549 1.3541 19 8 10.1065 -3.9135 0.9089 20 7 10.1766 -2.0060 2.0409 21 6 11.6201 -2.1347 2.2552 22 6 12.1246 -0.9370 3.0627 23 6 12.4732 0.2860 2.1981 24 6 13.6902 0.4894 3.1187 25 6 13.6191 -1.0178 3.4160 26 6 5.3540 -2.4710 0.2263 27 1 -0.4850 0.8400 -0.0004 28 1 2.1472 -3.5237 0.0059 29 1 3.2617 -5.7078 0.1974 30 1 5.7105 -5.8311 0.3988 31 1 7.8565 -4.5073 0.0419 32 1 9.7000 -1.2396 2.3964 33 1 11.8256 -3.0545 2.8027 34 1 12.1293 -2.1638 1.2919 35 1 11.4866 -0.7019 3.9146 36 1 12.7394 0.0336 1.1716 37 1 11.7384 1.0886 2.2607 38 1 13.4805 1.1158 3.9857 39 1 14.5948 0.7876 2.5886 40 1 13.8081 -1.2662 4.4604 41 1 14.1990 -1.6285 2.7240 42 1 5.9402 -1.5639 0.2346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042020510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:26 Heat of formation + Delta-G solvation = -66.646449 kcal Electronic energy + Delta-G solvation = -25323.497850 eV Core-core repulsion = 21462.429117 eV Total energy + Delta-G solvation = -3861.068732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18306 -40.94835 -40.15786 -39.42433 -38.36459 -36.18211 -35.25504 -34.44330 -31.45070 -30.50508 -29.69732 -27.29145 -26.52771 -26.09406 -24.04907 -23.32985 -22.72615 -21.60621 -20.49611 -19.98190 -19.75450 -19.06973 -17.97806 -17.27863 -17.02660 -16.92972 -16.88603 -16.44983 -16.05104 -15.89483 -15.58754 -15.56202 -15.24540 -14.89225 -14.47736 -14.35529 -14.27360 -14.15684 -13.34255 -13.32548 -13.19057 -12.94193 -12.77093 -12.74489 -12.63443 -12.53110 -12.02436 -11.55570 -11.47637 -11.40698 -11.27110 -11.19434 -10.88933 -10.70507 -10.34380 -9.48864 -9.01674 -8.51052 -6.23483 -0.05333 0.56349 0.62772 1.15543 1.29446 1.33410 1.50435 1.99788 2.27032 2.43963 2.73117 3.03395 3.08814 3.33324 3.63314 3.67999 3.77953 3.98306 4.07044 4.26529 4.30960 4.33703 4.46209 4.53424 4.63796 4.65139 4.80301 4.86551 4.88599 4.91970 5.04779 5.10414 5.14556 5.23110 5.29611 5.33707 5.34484 5.58731 5.64338 5.73053 5.83380 5.86781 6.15079 6.22936 6.62583 6.80526 6.83636 7.57792 8.60157 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002812 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.219512 B = 9954.738769 C =11795.743590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.398 4.398 8 H 0.089 0.911 9 O -0.245 6.245 10 C 0.135 3.865 11 C -0.241 4.241 12 C -0.050 4.050 13 C -0.189 4.189 14 C 0.173 3.827 15 N -0.626 5.626 16 C 0.499 3.501 17 O -0.523 6.523 18 C 0.520 3.480 19 O -0.534 6.534 20 N -0.686 5.686 21 C 0.127 3.873 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.198 4.198 27 H 0.285 0.715 28 H 0.117 0.883 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.435 0.565 32 H 0.419 0.581 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.433 -5.540 5.489 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.474 4.474 8 H 0.106 0.894 9 O -0.153 6.153 10 C 0.085 3.915 11 C -0.261 4.261 12 C -0.069 4.069 13 C -0.210 4.210 14 C 0.079 3.921 15 N -0.274 5.274 16 C 0.281 3.719 17 O -0.398 6.398 18 C 0.300 3.700 19 O -0.412 6.412 20 N -0.339 5.339 21 C 0.005 3.995 22 C -0.143 4.143 23 C -0.182 4.182 24 C -0.178 4.178 25 C -0.163 4.163 26 C -0.219 4.219 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.275 0.725 32 H 0.256 0.744 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 27.428 -5.186 5.500 28.451 hybrid contribution -0.582 0.832 -0.136 1.024 sum 26.847 -4.355 5.364 27.721 Atomic orbital electron populations 1.69712 1.06640 1.29557 1.50064 1.25195 0.95840 1.01858 0.95612 0.85313 0.78679 0.78021 0.79318 1.18941 1.18914 1.19492 1.20765 0.77822 0.96368 1.52481 0.89387 1.83528 1.21548 1.27382 1.82795 1.19322 0.92180 0.85575 0.94378 1.21418 1.00679 0.92941 1.11080 1.21024 0.94261 0.96709 0.94887 1.20949 0.93404 0.97175 1.09428 1.17271 0.82126 0.93189 0.99515 1.42934 1.05007 1.28154 1.51330 1.20638 0.89075 0.83054 0.79089 1.90846 1.69511 1.30754 1.48731 1.19582 0.86621 0.83745 0.80090 1.90763 1.69091 1.31504 1.49831 1.45838 1.10440 1.24397 1.53181 1.21718 0.77387 0.99666 1.00768 1.22867 0.98163 0.94198 0.99096 1.23093 0.98686 0.97651 0.98723 1.22841 0.98430 0.96696 0.99876 1.22874 0.93768 0.97023 1.02629 1.20193 0.91500 0.98482 1.11732 0.90524 0.86517 0.82411 0.81870 0.72462 0.74432 0.90413 0.90605 0.87913 0.89947 0.91583 0.89753 0.90818 0.90366 0.89167 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.14 13.96 21.61 0.30 -54.84 16 2 C 0.01 0.81 5.49 84.83 0.47 1.27 16 3 Si 0.96 46.80 28.62 68.60 1.96 48.76 16 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.40 -23.76 9.95 67.92 0.68 -23.08 16 8 H 0.09 5.39 5.43 -2.91 -0.02 5.37 16 9 O -0.25 -13.85 8.58 -22.80 -0.20 -14.05 16 10 C 0.14 6.58 6.64 22.56 0.15 6.73 16 11 C -0.24 -10.41 9.17 22.42 0.21 -10.20 16 12 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 13 C -0.19 -5.37 9.97 22.44 0.22 -5.14 16 14 C 0.17 5.74 6.29 38.20 0.24 5.98 16 15 N -0.63 -16.67 5.32 -304.89 -1.62 -18.29 16 16 C 0.50 14.14 7.73 87.24 0.67 14.82 16 17 O -0.52 -18.41 13.91 -3.31 -0.05 -18.45 16 18 C 0.52 12.11 7.89 87.24 0.69 12.80 16 19 O -0.53 -13.61 16.48 -3.28 -0.05 -13.67 16 20 N -0.69 -12.36 5.55 -464.51 -2.58 -14.94 16 21 C 0.13 1.70 5.50 86.38 0.47 2.17 16 22 C -0.12 -1.25 3.75 -10.27 -0.04 -1.28 16 23 C -0.14 -1.52 7.65 31.18 0.24 -1.28 16 24 C -0.14 -1.20 8.09 31.18 0.25 -0.95 16 25 C -0.13 -0.98 7.65 31.12 0.24 -0.74 16 26 C -0.20 -8.44 8.64 22.52 0.19 -8.24 16 27 H 0.29 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.12 5.44 5.63 -2.91 -0.02 5.42 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.43 8.82 8.30 -92.71 -0.77 8.05 16 32 H 0.42 7.17 7.94 -92.71 -0.74 6.44 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.05 7.87 -2.39 -0.02 1.03 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.90 7.92 -2.38 -0.02 0.88 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.63 8.10 -2.39 -0.02 0.61 16 42 H 0.12 5.41 6.23 -2.91 -0.02 5.39 16 Total: -1.00 -72.35 358.85 2.25 -70.10 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.43 Total: 23.91 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.91 Total: -8.54 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -3.90 Total: -88.07 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.30 Total: -46.17 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.96 Total: 48.76 kcal Total: -72.35 2.25 -70.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042020510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds