Wall clock time and date at job start Tue Mar 31 2020 12:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48506 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46959 * 299.99507 * 3 2 1 6 6 H 1.48495 * 109.47538 * 59.99458 * 3 2 1 7 7 C 1.38650 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99649 * 180.02562 * 7 2 1 9 9 O 1.34798 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99786 * 174.96328 * 9 7 2 11 11 C 1.38941 * 119.99350 * 5.34155 * 10 9 7 12 12 C 1.37968 * 120.00867 * 180.02562 * 11 10 9 13 13 C 1.38996 * 119.99175 * 0.02562 * 12 11 10 14 14 N 1.39741 * 120.00603 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99976 * 35.13332 * 14 13 12 16 16 O 1.21392 * 120.00268 * 355.50429 * 15 14 13 17 17 C 1.49315 * 119.99972 * 175.49505 * 15 14 13 18 18 O 1.21371 * 120.00324 * 0.02562 * 17 15 14 19 19 N 1.34777 * 120.00270 * 180.02562 * 17 15 14 20 20 C 1.46499 * 120.00167 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.47175 * 179.97438 * 20 19 17 22 22 C 1.53782 * 113.61338 * 85.86406 * 21 20 19 23 23 C 1.54052 * 86.98538 * 140.02173 * 22 21 20 24 24 C 1.53780 * 113.61554 * 183.47131 * 21 20 19 25 25 C 1.38990 * 119.98513 * 0.24105 * 13 12 11 26 26 C 1.37965 * 119.99603 * 359.49903 * 25 13 12 27 27 H 0.97000 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99744 * 0.02562 * 11 10 9 29 29 H 1.07997 * 120.00312 * 179.97438 * 12 11 10 30 30 H 0.96999 * 120.00244 * 215.13847 * 14 13 12 31 31 H 0.97001 * 119.99575 * 0.02562 * 19 17 15 32 32 H 1.09001 * 109.47076 * 60.00411 * 20 19 17 33 33 H 1.08995 * 109.47274 * 299.99937 * 20 19 17 34 34 H 1.09005 * 112.85033 * 314.67149 * 21 20 19 35 35 H 1.09001 * 113.61292 * 254.61777 * 22 21 20 36 36 H 1.08999 * 113.61469 * 25.51691 * 22 21 20 37 37 H 1.08997 * 113.62030 * 220.02235 * 23 22 21 38 38 H 1.09001 * 113.61003 * 89.11330 * 23 22 21 39 39 H 1.08993 * 113.61594 * 334.48845 * 24 21 20 40 40 H 1.08996 * 113.61113 * 105.30322 * 24 21 20 41 41 H 1.08002 * 119.99950 * 179.74745 * 25 13 12 42 42 H 1.07998 * 120.00319 * 180.22271 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5043 -0.1051 11 6 3.4580 -3.4370 -0.0951 12 6 4.2057 -4.5915 -0.2030 13 6 3.5705 -5.8220 -0.3223 14 7 4.3274 -6.9915 -0.4321 15 6 5.4931 -7.1048 0.2349 16 8 5.9260 -6.1620 0.8652 17 6 6.2521 -8.3902 0.1986 18 8 5.8196 -9.3328 -0.4319 19 7 7.4176 -8.5037 0.8659 20 6 8.1625 -9.7647 0.8298 21 6 9.4390 -9.6269 1.6620 22 6 9.2336 -9.9184 3.1579 23 6 10.5923 -10.6434 3.1200 24 6 10.3388 -10.8733 1.6207 25 6 2.1822 -5.8885 -0.3378 26 6 1.4351 -4.7343 -0.2245 27 1 -0.4850 0.8401 -0.0004 28 1 3.9516 -2.4807 -0.0028 29 1 5.2843 -4.5390 -0.1956 30 1 4.0140 -7.7217 -0.9884 31 1 7.7631 -7.7505 1.3701 32 1 8.4252 -10.0021 -0.2011 33 1 7.5450 -10.5634 1.2406 34 1 9.9726 -8.6965 1.4678 35 1 9.2315 -9.0239 3.7808 36 1 8.3914 -10.5796 3.3623 37 1 10.6133 -11.5626 3.7053 38 1 11.4412 -9.9908 3.3243 39 1 9.7984 -11.7950 1.4056 40 1 11.2278 -10.7497 1.0023 41 1 1.6885 -6.8442 -0.4346 42 1 0.3564 -4.7862 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042020550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:20 Heat of formation + Delta-G solvation = -47.594204 kcal Electronic energy + Delta-G solvation = -24977.869192 eV Core-core repulsion = 21117.626626 eV Total energy + Delta-G solvation = -3860.242565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90254 -39.66584 -38.99309 -38.29653 -36.62173 -35.03144 -33.86395 -32.22460 -30.27981 -29.24653 -28.18794 -26.09325 -25.54724 -24.65954 -22.95304 -22.26532 -21.29417 -20.40906 -19.73929 -18.80064 -17.96623 -17.31411 -16.93408 -16.34501 -16.18716 -15.87661 -15.46480 -14.83701 -14.73630 -14.52586 -14.18364 -14.01283 -13.64670 -13.63773 -13.39831 -12.95795 -12.91934 -12.62629 -12.46219 -12.14023 -11.87024 -11.78997 -11.60843 -11.39743 -11.09642 -11.07587 -10.86103 -10.75184 -10.74584 -10.44443 -9.79711 -9.63212 -9.49982 -9.22403 -8.75711 -8.26796 -7.01867 -6.48673 -4.05897 1.25748 2.12187 2.17460 2.37880 3.10434 3.13248 3.18915 3.22771 3.58626 3.94629 4.09658 4.15049 4.21803 4.38329 4.42882 4.54309 4.76672 4.97630 5.05782 5.21577 5.22115 5.28018 5.28154 5.43359 5.48058 5.54282 5.62503 5.67570 5.72009 5.92229 6.02963 6.03864 6.10246 6.23608 6.62186 6.71779 6.87804 6.95028 7.03302 7.24185 7.38086 7.43839 7.67581 7.72155 7.96338 8.08724 8.96992 9.65505 10.69012 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002130 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.960238 B =13141.446078 C =14014.792773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.150 3.850 11 C -0.222 4.222 12 C -0.060 4.060 13 C 0.022 3.978 14 N -0.624 5.624 15 C 0.495 3.505 16 O -0.510 6.510 17 C 0.511 3.489 18 O -0.524 6.524 19 N -0.700 5.700 20 C 0.127 3.873 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.085 4.085 26 C -0.178 4.178 27 H 0.270 0.730 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.414 0.586 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.851 -19.118 2.587 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.080 4.080 13 C -0.070 4.070 14 N -0.269 5.269 15 C 0.277 3.723 16 O -0.385 6.385 17 C 0.292 3.708 18 O -0.400 6.400 19 N -0.354 5.354 20 C 0.004 3.996 21 C -0.146 4.146 22 C -0.176 4.176 23 C -0.180 4.180 24 C -0.168 4.168 25 C -0.105 4.105 26 C -0.197 4.197 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.250 0.750 31 H 0.250 0.750 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.136 0.864 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.426 -18.933 2.618 25.864 hybrid contribution 0.497 0.786 -0.017 0.930 sum 17.923 -18.147 2.602 25.638 Atomic orbital electron populations 1.70050 1.05973 1.27676 1.45777 1.25313 0.95869 0.98906 0.96464 0.85630 0.79208 0.80244 0.78270 1.19011 1.20108 1.20111 1.21408 0.91929 0.80736 1.52620 0.88853 1.83966 1.34370 1.11471 1.77829 1.19446 0.90282 0.88129 0.92604 1.21095 0.93548 0.98754 1.10787 1.20839 0.99773 0.90254 0.97123 1.17242 0.89974 0.84822 1.15000 1.42842 1.20364 1.18006 1.45683 1.20021 0.83011 0.88342 0.80959 1.90775 1.67216 1.39046 1.41504 1.20178 0.82055 0.88530 0.80087 1.90760 1.67898 1.39847 1.41450 1.45750 1.21805 1.16691 1.51157 1.21522 0.91636 0.85551 1.00877 1.22862 0.95711 1.00107 0.95940 1.23076 0.97952 1.01013 0.95594 1.22856 0.97735 1.00895 0.96537 1.22868 0.99407 0.97470 0.97072 1.20389 0.91224 0.97702 1.01153 1.20003 0.99600 0.89740 1.10406 0.91995 0.85029 0.85663 0.74980 0.74965 0.90829 0.90795 0.88267 0.91077 0.89775 0.91251 0.90045 0.89680 0.91060 0.86416 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.82 9.48 30.88 0.29 -10.53 16 8 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 9 O -0.17 -4.88 9.75 0.12 0.00 -4.88 16 10 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 11 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 12 C -0.06 -1.19 8.68 -39.40 -0.34 -1.53 16 13 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 14 N -0.62 -9.19 5.32 -10.27 -0.05 -9.25 16 15 C 0.50 7.27 7.73 -11.65 -0.09 7.18 16 16 O -0.51 -8.60 13.91 5.46 0.08 -8.52 16 17 C 0.51 6.41 7.88 -11.65 -0.09 6.32 16 18 O -0.52 -7.41 16.48 5.48 0.09 -7.32 16 19 N -0.70 -6.72 5.55 -60.77 -0.34 -7.06 16 20 C 0.13 0.96 5.50 -4.04 -0.02 0.94 16 21 C -0.13 -0.72 3.75 -89.81 -0.34 -1.05 16 22 C -0.14 -0.78 7.65 -25.78 -0.20 -0.98 16 23 C -0.14 -0.69 8.09 -25.78 -0.21 -0.90 16 24 C -0.13 -0.62 7.64 -25.92 -0.20 -0.82 16 25 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 26 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 28 H 0.13 2.92 5.63 -52.48 -0.30 2.62 16 29 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 30 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 31 H 0.41 3.62 7.94 -40.82 -0.32 3.30 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -32.10 359.97 -7.60 -39.71 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.32 Total: 9.10 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.22 Total: -8.39 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.37 Total: -40.50 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.17 Total: -20.72 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.10 -7.60 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042020550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds