Wall clock time and date at job start Tue Mar 31 2020 12:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48506 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46959 * 299.99507 * 3 2 1 6 6 H 1.48495 * 109.47538 * 59.99458 * 3 2 1 7 7 C 1.38650 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99649 * 180.02562 * 7 2 1 9 9 O 1.34798 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99786 * 174.96328 * 9 7 2 11 11 C 1.38941 * 119.99350 * 5.34155 * 10 9 7 12 12 C 1.37968 * 120.00867 * 180.02562 * 11 10 9 13 13 C 1.38996 * 119.99175 * 0.02562 * 12 11 10 14 14 N 1.39741 * 120.00603 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99976 * 35.13332 * 14 13 12 16 16 O 1.21392 * 120.00268 * 355.50429 * 15 14 13 17 17 C 1.49315 * 119.99972 * 175.49505 * 15 14 13 18 18 O 1.21371 * 120.00324 * 0.02562 * 17 15 14 19 19 N 1.34777 * 120.00270 * 180.02562 * 17 15 14 20 20 C 1.46499 * 120.00167 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.47175 * 179.97438 * 20 19 17 22 22 C 1.53782 * 113.61338 * 85.86406 * 21 20 19 23 23 C 1.54052 * 86.98538 * 140.02173 * 22 21 20 24 24 C 1.53780 * 113.61554 * 183.47131 * 21 20 19 25 25 C 1.38990 * 119.98513 * 0.24105 * 13 12 11 26 26 C 1.37965 * 119.99603 * 359.49903 * 25 13 12 27 27 H 0.97000 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99744 * 0.02562 * 11 10 9 29 29 H 1.07997 * 120.00312 * 179.97438 * 12 11 10 30 30 H 0.96999 * 120.00244 * 215.13847 * 14 13 12 31 31 H 0.97001 * 119.99575 * 0.02562 * 19 17 15 32 32 H 1.09001 * 109.47076 * 60.00411 * 20 19 17 33 33 H 1.08995 * 109.47274 * 299.99937 * 20 19 17 34 34 H 1.09005 * 112.85033 * 314.67149 * 21 20 19 35 35 H 1.09001 * 113.61292 * 254.61777 * 22 21 20 36 36 H 1.08999 * 113.61469 * 25.51691 * 22 21 20 37 37 H 1.08997 * 113.62030 * 220.02235 * 23 22 21 38 38 H 1.09001 * 113.61003 * 89.11330 * 23 22 21 39 39 H 1.08993 * 113.61594 * 334.48845 * 24 21 20 40 40 H 1.08996 * 113.61113 * 105.30322 * 24 21 20 41 41 H 1.08002 * 119.99950 * 179.74745 * 25 13 12 42 42 H 1.07998 * 120.00319 * 180.22271 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8909 2.3964 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0703 -3.5043 -0.1051 11 6 3.4580 -3.4370 -0.0951 12 6 4.2057 -4.5915 -0.2030 13 6 3.5705 -5.8220 -0.3223 14 7 4.3274 -6.9915 -0.4321 15 6 5.4931 -7.1048 0.2349 16 8 5.9260 -6.1620 0.8652 17 6 6.2521 -8.3902 0.1986 18 8 5.8196 -9.3328 -0.4319 19 7 7.4176 -8.5037 0.8659 20 6 8.1625 -9.7647 0.8298 21 6 9.4390 -9.6269 1.6620 22 6 9.2336 -9.9184 3.1579 23 6 10.5923 -10.6434 3.1200 24 6 10.3388 -10.8733 1.6207 25 6 2.1822 -5.8885 -0.3378 26 6 1.4351 -4.7343 -0.2245 27 1 -0.4850 0.8401 -0.0004 28 1 3.9516 -2.4807 -0.0028 29 1 5.2843 -4.5390 -0.1956 30 1 4.0140 -7.7217 -0.9884 31 1 7.7631 -7.7505 1.3701 32 1 8.4252 -10.0021 -0.2011 33 1 7.5450 -10.5634 1.2406 34 1 9.9726 -8.6965 1.4678 35 1 9.2315 -9.0239 3.7808 36 1 8.3914 -10.5796 3.3623 37 1 10.6133 -11.5626 3.7053 38 1 11.4412 -9.9908 3.3243 39 1 9.7984 -11.7950 1.4056 40 1 11.2278 -10.7497 1.0023 41 1 1.6885 -6.8442 -0.4346 42 1 0.3564 -4.7862 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042020550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:19 Heat of formation + Delta-G solvation = -69.552585 kcal Electronic energy + Delta-G solvation = -24978.821378 eV Core-core repulsion = 21117.626626 eV Total energy + Delta-G solvation = -3861.194752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08283 -40.85864 -40.09768 -39.38772 -38.21594 -36.06960 -35.15453 -34.17147 -31.91693 -30.22477 -29.48607 -27.40653 -26.49859 -25.80992 -24.05230 -23.55626 -22.65312 -21.46966 -20.54415 -20.01780 -19.56510 -18.86578 -18.32690 -17.42863 -17.17313 -16.92575 -16.30888 -16.21751 -16.13825 -15.59213 -15.51157 -15.34086 -15.26329 -14.85337 -14.68467 -14.33065 -14.15496 -13.58848 -13.39739 -13.31409 -13.27035 -12.94371 -12.77965 -12.72039 -12.61572 -12.42199 -12.10384 -11.53446 -11.46634 -11.32076 -11.18218 -11.11056 -10.70983 -10.57878 -10.31371 -9.87958 -8.70342 -8.47768 -6.14416 0.05498 0.50836 0.69271 1.24485 1.36225 1.43752 1.54097 2.06284 2.17611 2.56505 2.79132 3.12602 3.32901 3.48702 3.64803 3.69525 3.79462 3.99336 4.06018 4.08347 4.28016 4.44975 4.47617 4.57651 4.64424 4.65842 4.87909 4.89709 4.93729 5.04771 5.07080 5.07536 5.11671 5.16259 5.27259 5.33633 5.36037 5.49472 5.60020 5.66358 5.86325 6.01231 6.09486 6.30306 6.69098 6.88012 6.97110 7.75181 8.74948 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002130 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.960238 B =13141.446078 C =14014.792773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.224 6.224 10 C 0.113 3.887 11 C -0.228 4.228 12 C -0.068 4.068 13 C 0.049 3.951 14 N -0.619 5.619 15 C 0.499 3.501 16 O -0.530 6.530 17 C 0.518 3.482 18 O -0.539 6.539 19 N -0.686 5.686 20 C 0.126 3.874 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.071 4.071 26 C -0.180 4.180 27 H 0.273 0.727 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.429 0.571 31 H 0.419 0.581 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.164 0.836 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.185 -21.323 2.550 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.130 6.130 10 C 0.062 3.938 11 C -0.248 4.248 12 C -0.088 4.088 13 C -0.045 4.045 14 N -0.266 5.266 15 C 0.281 3.719 16 O -0.407 6.407 17 C 0.297 3.703 18 O -0.416 6.416 19 N -0.338 5.338 20 C 0.004 3.996 21 C -0.142 4.142 22 C -0.181 4.181 23 C -0.179 4.179 24 C -0.165 4.165 25 C -0.091 4.091 26 C -0.199 4.199 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.151 0.849 30 H 0.268 0.732 31 H 0.257 0.743 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.182 0.818 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.820 -21.217 2.586 29.149 hybrid contribution -0.040 1.067 0.009 1.068 sum 19.780 -20.150 2.595 28.355 Atomic orbital electron populations 1.70180 1.07895 1.28789 1.48577 1.26555 0.96867 1.02633 0.95831 0.84546 0.78198 0.74966 0.78613 1.17692 1.19235 1.19315 1.21840 0.92507 0.81429 1.53133 0.88198 1.83935 1.35699 1.12465 1.80950 1.19971 0.91200 0.88314 0.94360 1.21109 0.93168 0.99401 1.11077 1.20941 1.00080 0.90326 0.97459 1.17370 0.90547 0.85296 1.11246 1.42787 1.20273 1.17344 1.46216 1.20467 0.82575 0.88911 0.79957 1.90777 1.67628 1.40089 1.42176 1.19697 0.82662 0.87233 0.80658 1.90768 1.68499 1.39850 1.42529 1.45804 1.20687 1.17645 1.49677 1.21696 0.92121 0.84344 1.01427 1.22863 0.94929 1.00898 0.95522 1.23104 0.98437 1.01024 0.95493 1.22861 0.97337 1.01032 0.96627 1.22878 0.99398 0.97060 0.97139 1.20779 0.90950 0.98477 0.98863 1.20306 1.00430 0.89524 1.09662 0.91764 0.86017 0.84892 0.73160 0.74343 0.90644 0.90803 0.87745 0.91343 0.90043 0.90903 0.89639 0.89342 0.90404 0.81806 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 3 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.41 -23.99 9.48 67.92 0.64 -23.34 16 8 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 9 O -0.22 -13.33 9.75 -22.50 -0.22 -13.55 16 10 C 0.11 5.55 6.65 22.61 0.15 5.70 16 11 C -0.23 -10.26 9.16 22.37 0.20 -10.06 16 12 C -0.07 -2.62 8.68 22.39 0.19 -2.43 16 13 C 0.05 1.61 6.30 38.24 0.24 1.85 16 14 N -0.62 -16.30 5.32 -304.75 -1.62 -17.92 16 15 C 0.50 13.34 7.73 87.23 0.67 14.01 16 16 O -0.53 -16.77 13.91 -3.38 -0.05 -16.82 16 17 C 0.52 11.63 7.88 87.23 0.69 12.32 16 18 O -0.54 -13.75 16.48 -3.31 -0.05 -13.80 16 19 N -0.69 -11.46 5.55 -464.54 -2.58 -14.04 16 20 C 0.13 1.60 5.50 86.38 0.47 2.07 16 21 C -0.12 -1.10 3.75 -10.27 -0.04 -1.14 16 22 C -0.14 -1.32 7.65 31.21 0.24 -1.09 16 23 C -0.14 -1.06 8.09 31.21 0.25 -0.80 16 24 C -0.13 -0.91 7.64 31.12 0.24 -0.67 16 25 C -0.07 -2.28 9.96 22.39 0.22 -2.06 16 26 C -0.18 -7.29 9.98 22.37 0.22 -7.07 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.12 5.62 5.63 -2.91 -0.02 5.60 16 29 H 0.13 4.91 6.22 -2.91 -0.02 4.89 16 30 H 0.43 9.04 8.30 -92.71 -0.77 8.28 16 31 H 0.42 6.34 7.94 -92.71 -0.74 5.61 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.99 7.88 -2.39 -0.02 0.97 16 34 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.80 7.92 -2.39 -0.02 0.78 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 42 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -72.56 359.97 2.25 -70.31 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.43 Total: 29.72 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.87 Total: -13.41 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.90 Total: -87.39 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.32 Total: -44.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.56 2.25 -70.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042020550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.755 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds