Wall clock time and date at job start Tue Mar 31 2020 12:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86804 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00394 * 3 2 1 5 5 H 1.48495 * 109.47103 * 30.00487 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00674 * 3 2 1 7 7 C 1.38646 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00295 * 174.96458 * 9 7 2 11 11 C 1.38957 * 120.02694 * 5.36535 * 10 9 7 12 12 C 1.38139 * 120.08072 * 179.97438 * 11 10 9 13 13 C 1.38187 * 120.14441 * 359.74323 * 12 11 10 14 14 C 1.38977 * 120.05875 * 0.51415 * 13 12 11 15 15 N 1.39729 * 120.04104 * 179.76739 * 14 13 12 16 16 C 1.34776 * 119.99623 * 214.85883 * 15 14 13 17 17 O 1.21376 * 120.00309 * 355.48789 * 16 15 14 18 18 C 1.49360 * 119.99838 * 175.49425 * 16 15 14 19 19 O 1.21362 * 119.99673 * 359.97438 * 18 16 15 20 20 N 1.34776 * 119.99838 * 179.97438 * 18 16 15 21 21 C 1.46500 * 119.99384 * 179.97438 * 20 18 16 22 22 C 1.54265 * 110.03518 * 272.90391 * 21 20 18 23 23 C 1.54965 * 104.16110 * 217.14239 * 22 21 20 24 24 C 1.54888 * 102.77907 * 37.88738 * 23 22 21 25 25 C 1.53885 * 110.02912 * 155.68847 * 21 20 18 26 26 C 1.38716 * 120.03089 * 185.34567 * 10 9 7 27 27 H 0.97002 * 119.99654 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.96232 * 359.95769 * 11 10 9 29 29 H 1.08000 * 119.93000 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.97124 * 180.25060 * 13 12 11 31 31 H 0.96996 * 120.00277 * 34.85681 * 15 14 13 32 32 H 0.96996 * 119.99973 * 0.27047 * 20 18 16 33 33 H 1.08997 * 110.02063 * 34.30257 * 21 20 18 34 34 H 1.09002 * 110.48298 * 335.78893 * 22 21 20 35 35 H 1.09001 * 110.48719 * 98.42960 * 22 21 20 36 36 H 1.09006 * 110.71611 * 279.57344 * 23 22 21 37 37 H 1.09005 * 110.92318 * 156.30069 * 23 22 21 38 38 H 1.08997 * 110.48500 * 203.40914 * 24 23 22 39 39 H 1.09000 * 110.59682 * 80.82171 * 24 23 22 40 40 H 1.09000 * 110.03224 * 238.57054 * 25 21 20 41 41 H 1.09001 * 110.03101 * 0.02562 * 25 21 20 42 42 H 1.08003 * 120.07437 * 0.03783 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1072 11 6 3.4580 -3.4381 -0.0978 12 6 4.2072 -4.5936 -0.2058 13 6 3.5797 -5.8196 -0.3182 14 6 2.1919 -5.8925 -0.3336 15 7 1.5578 -7.1319 -0.4522 16 6 0.4027 -7.2349 -1.1389 17 8 -0.1293 -6.2391 -1.5845 18 6 -0.2227 -8.5745 -1.3516 19 8 0.3095 -9.5702 -0.9063 20 7 -1.3781 -8.6774 -2.0379 21 6 -1.9912 -9.9914 -2.2469 22 6 -1.4123 -10.6487 -3.5168 23 6 -2.6218 -11.3833 -4.1484 24 6 -3.7924 -10.4034 -3.8870 25 6 -3.5040 -9.8357 -2.4818 26 6 1.4365 -4.7329 -0.2254 27 1 -0.4850 0.8401 0.0004 28 1 3.9516 -2.4819 -0.0062 29 1 5.2858 -4.5391 -0.1978 30 1 4.1682 -6.7216 -0.3984 31 1 1.9489 -7.9182 -0.0402 32 1 -1.8013 -7.8820 -2.3971 33 1 -1.8115 -10.6289 -1.3813 34 1 -1.0289 -9.8895 -4.1984 35 1 -0.6279 -11.3589 -3.2550 36 1 -2.7973 -12.3366 -3.6498 37 1 -2.4726 -11.5303 -5.2182 38 1 -4.7440 -10.9349 -3.8957 39 1 -3.7962 -9.6040 -4.6280 40 1 -4.0584 -10.3985 -1.7307 41 1 -3.7818 -8.7825 -2.4408 42 1 0.3578 -4.7871 -0.2332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048637230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:22 Heat of formation + Delta-G solvation = -72.098259 kcal Electronic energy + Delta-G solvation = -25534.496927 eV Core-core repulsion = 21673.191786 eV Total energy + Delta-G solvation = -3861.305141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95045 -39.57521 -38.58561 -37.79295 -36.62033 -34.51239 -33.62887 -32.26532 -29.69933 -29.11781 -28.77160 -28.14605 -25.42917 -24.63605 -22.21224 -21.40873 -21.07656 -20.66402 -20.26337 -18.70897 -18.07943 -17.08964 -17.05482 -16.03974 -15.91460 -15.68853 -15.29300 -15.09910 -14.73303 -14.46906 -14.23696 -13.84360 -13.74524 -13.65548 -13.52285 -12.88114 -12.55662 -12.46877 -11.96206 -11.82998 -11.67297 -11.57351 -11.54061 -11.43982 -11.19127 -11.08136 -11.03878 -11.00078 -10.77808 -10.46644 -9.85993 -9.65711 -9.43343 -9.21128 -8.83478 -7.79569 -7.23291 -6.43979 -4.03206 1.26126 2.09341 2.30284 2.36376 3.13174 3.14158 3.19158 3.23673 3.58192 3.97437 4.13584 4.23734 4.40450 4.52550 4.56565 5.00863 5.05981 5.10105 5.11002 5.15285 5.26803 5.28649 5.42778 5.53806 5.59162 5.66886 5.74456 5.79462 5.82874 5.94084 6.03405 6.13126 6.14983 6.31153 6.55668 6.68544 6.95697 7.00081 7.05001 7.31388 7.41930 7.47304 7.66829 7.76537 8.00360 8.07468 9.00919 9.71031 10.73808 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002561 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.118568 B =10928.703121 C =12100.466213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.166 3.834 11 C -0.241 4.241 12 C -0.058 4.058 13 C -0.229 4.229 14 C 0.168 3.832 15 N -0.637 5.637 16 C 0.497 3.503 17 O -0.490 6.490 18 C 0.514 3.486 19 O -0.522 6.522 20 N -0.696 5.696 21 C 0.138 3.862 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.185 4.185 27 H 0.270 0.730 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.414 0.586 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -19.865 -5.435 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.111 3.889 11 C -0.261 4.261 12 C -0.077 4.077 13 C -0.250 4.250 14 C 0.075 3.925 15 N -0.283 5.283 16 C 0.278 3.722 17 O -0.363 6.363 18 C 0.295 3.705 19 O -0.398 6.398 20 N -0.349 5.349 21 C 0.034 3.966 22 C -0.176 4.176 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.171 4.171 26 C -0.206 4.206 27 H 0.080 0.920 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.251 0.749 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.591 -19.668 -5.420 20.715 hybrid contribution 0.558 0.810 0.021 0.984 sum -3.033 -18.858 -5.399 19.848 Atomic orbital electron populations 1.70054 1.05979 1.27688 1.45747 1.25308 0.95848 0.98858 0.96521 0.85700 0.78900 0.80024 0.78722 1.19859 1.20268 1.19166 1.21351 0.91844 0.80742 1.52888 0.88937 1.83989 1.34248 1.11332 1.77964 1.19105 0.90031 0.87829 0.91948 1.21222 0.93735 0.99162 1.11943 1.20521 0.98527 0.91567 0.97073 1.20307 0.91664 0.97962 1.15093 1.17181 0.91040 0.83377 1.00930 1.43001 1.22999 1.10845 1.51474 1.20147 0.82432 0.89466 0.80124 1.90863 1.60641 1.37326 1.47432 1.20124 0.81973 0.89305 0.79140 1.90746 1.61922 1.38063 1.49057 1.45994 1.23503 1.10937 1.54503 1.21810 0.92212 0.83503 0.99112 1.22836 0.98258 1.00025 0.96440 1.22489 0.94441 0.98373 1.00855 1.22368 0.98602 0.98957 0.96332 1.22465 0.94072 1.02468 0.98136 1.20150 1.00530 0.89193 1.10750 0.91991 0.85301 0.86811 0.87071 0.74540 0.74857 0.88644 0.90840 0.90807 0.91202 0.91192 0.91252 0.91222 0.90383 0.90540 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 7 C -0.39 -11.03 9.49 30.88 0.29 -10.74 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.17 -5.02 9.75 0.03 0.00 -5.02 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 C -0.24 -5.23 9.17 -39.35 -0.36 -5.59 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 13 C -0.23 -3.94 9.96 -39.33 -0.39 -4.34 16 14 C 0.17 3.15 6.29 -83.77 -0.53 2.63 16 15 N -0.64 -9.95 5.32 -10.31 -0.05 -10.00 16 16 C 0.50 7.93 7.73 -11.63 -0.09 7.84 16 17 O -0.49 -9.31 13.91 5.47 0.08 -9.23 16 18 C 0.51 6.88 7.88 -11.63 -0.09 6.79 16 19 O -0.52 -7.58 16.15 5.49 0.09 -7.49 16 20 N -0.70 -7.46 5.03 -53.18 -0.27 -7.73 16 21 C 0.14 1.20 3.23 -66.81 -0.22 0.98 16 22 C -0.14 -1.10 6.54 -25.03 -0.16 -1.27 16 23 C -0.12 -0.76 6.91 -24.70 -0.17 -0.93 16 24 C -0.12 -0.73 6.83 -25.07 -0.17 -0.91 16 25 C -0.13 -0.89 6.57 -25.61 -0.17 -1.06 16 26 C -0.19 -4.20 8.64 -39.19 -0.34 -4.53 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.42 5.37 8.30 -40.82 -0.34 5.03 16 32 H 0.41 4.20 7.78 -40.82 -0.32 3.88 16 33 H 0.10 0.91 7.59 -51.93 -0.39 0.51 16 34 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.52 7.61 -51.93 -0.40 0.12 16 42 H 0.13 3.20 6.23 -52.48 -0.33 2.87 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -32.96 355.77 -7.49 -40.45 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.28 Total: 10.58 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.15 Total: -7.72 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.44 Total: -42.47 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.96 -7.49 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048637230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.647 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds