Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86804 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00394 * 3 2 1 5 5 H 1.48495 * 109.47103 * 30.00487 * 3 2 1 6 6 H 1.48498 * 109.47070 * 150.00674 * 3 2 1 7 7 C 1.38646 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00165 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00295 * 174.96458 * 9 7 2 11 11 C 1.38957 * 120.02694 * 5.36535 * 10 9 7 12 12 C 1.38139 * 120.08072 * 179.97438 * 11 10 9 13 13 C 1.38187 * 120.14441 * 359.74323 * 12 11 10 14 14 C 1.38977 * 120.05875 * 0.51415 * 13 12 11 15 15 N 1.39729 * 120.04104 * 179.76739 * 14 13 12 16 16 C 1.34776 * 119.99623 * 214.85883 * 15 14 13 17 17 O 1.21376 * 120.00309 * 355.48789 * 16 15 14 18 18 C 1.49360 * 119.99838 * 175.49425 * 16 15 14 19 19 O 1.21362 * 119.99673 * 359.97438 * 18 16 15 20 20 N 1.34776 * 119.99838 * 179.97438 * 18 16 15 21 21 C 1.46500 * 119.99384 * 179.97438 * 20 18 16 22 22 C 1.54265 * 110.03518 * 272.90391 * 21 20 18 23 23 C 1.54965 * 104.16110 * 217.14239 * 22 21 20 24 24 C 1.54888 * 102.77907 * 37.88738 * 23 22 21 25 25 C 1.53885 * 110.02912 * 155.68847 * 21 20 18 26 26 C 1.38716 * 120.03089 * 185.34567 * 10 9 7 27 27 H 0.97002 * 119.99654 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.96232 * 359.95769 * 11 10 9 29 29 H 1.08000 * 119.93000 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.97124 * 180.25060 * 13 12 11 31 31 H 0.96996 * 120.00277 * 34.85681 * 15 14 13 32 32 H 0.96996 * 119.99973 * 0.27047 * 20 18 16 33 33 H 1.08997 * 110.02063 * 34.30257 * 21 20 18 34 34 H 1.09002 * 110.48298 * 335.78893 * 22 21 20 35 35 H 1.09001 * 110.48719 * 98.42960 * 22 21 20 36 36 H 1.09006 * 110.71611 * 279.57344 * 23 22 21 37 37 H 1.09005 * 110.92318 * 156.30069 * 23 22 21 38 38 H 1.08997 * 110.48500 * 203.40914 * 24 23 22 39 39 H 1.09000 * 110.59682 * 80.82171 * 24 23 22 40 40 H 1.09000 * 110.03224 * 238.57054 * 25 21 20 41 41 H 1.09001 * 110.03101 * 0.02562 * 25 21 20 42 42 H 1.08003 * 120.07437 * 0.03783 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1072 11 6 3.4580 -3.4381 -0.0978 12 6 4.2072 -4.5936 -0.2058 13 6 3.5797 -5.8196 -0.3182 14 6 2.1919 -5.8925 -0.3336 15 7 1.5578 -7.1319 -0.4522 16 6 0.4027 -7.2349 -1.1389 17 8 -0.1293 -6.2391 -1.5845 18 6 -0.2227 -8.5745 -1.3516 19 8 0.3095 -9.5702 -0.9063 20 7 -1.3781 -8.6774 -2.0379 21 6 -1.9912 -9.9914 -2.2469 22 6 -1.4123 -10.6487 -3.5168 23 6 -2.6218 -11.3833 -4.1484 24 6 -3.7924 -10.4034 -3.8870 25 6 -3.5040 -9.8357 -2.4818 26 6 1.4365 -4.7329 -0.2254 27 1 -0.4850 0.8401 0.0004 28 1 3.9516 -2.4819 -0.0062 29 1 5.2858 -4.5391 -0.1978 30 1 4.1682 -6.7216 -0.3984 31 1 1.9489 -7.9182 -0.0402 32 1 -1.8013 -7.8820 -2.3971 33 1 -1.8115 -10.6289 -1.3813 34 1 -1.0289 -9.8895 -4.1984 35 1 -0.6279 -11.3589 -3.2550 36 1 -2.7973 -12.3366 -3.6498 37 1 -2.4726 -11.5303 -5.2182 38 1 -4.7440 -10.9349 -3.8957 39 1 -3.7962 -9.6040 -4.6280 40 1 -4.0584 -10.3985 -1.7307 41 1 -3.7818 -8.7825 -2.4408 42 1 0.3578 -4.7871 -0.2332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048637230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = -95.496951 kcal Electronic energy + Delta-G solvation = -25535.511571 eV Core-core repulsion = 21673.191786 eV Total energy + Delta-G solvation = -3862.319784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20599 -40.91707 -40.06167 -38.69857 -38.28575 -35.87255 -34.67454 -34.25581 -31.33806 -30.32365 -29.68965 -29.00248 -27.37654 -25.92702 -23.71198 -23.00330 -21.75042 -21.44265 -21.42529 -20.16949 -19.64293 -18.83192 -18.15283 -17.20895 -17.07836 -16.89646 -16.77373 -16.25422 -16.06021 -15.91574 -15.70746 -15.46306 -15.09105 -14.77058 -14.39480 -14.30844 -14.28656 -13.61326 -13.28154 -13.22667 -13.11251 -12.74516 -12.70068 -12.55059 -12.37135 -12.11442 -12.05431 -11.96991 -11.80500 -11.49246 -11.43030 -11.31027 -10.78166 -10.71281 -10.33253 -9.43502 -8.95057 -8.46515 -6.15935 -0.04834 0.59377 0.68424 1.15746 1.35965 1.45946 1.54177 1.98695 2.17653 2.47359 2.80589 3.14896 3.20811 3.53573 3.56788 3.65250 3.95321 4.10808 4.33555 4.36633 4.39901 4.45503 4.50412 4.55985 4.58780 4.68862 4.75250 4.82758 4.94639 4.99107 5.05723 5.10442 5.21964 5.23831 5.25084 5.35007 5.37454 5.44512 5.60111 5.70316 5.84108 6.02458 6.11743 6.22665 6.63016 6.80758 6.97335 7.78204 8.77037 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002561 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.118568 B =10928.703121 C =12100.466213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.022 2.978 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.232 6.232 10 C 0.127 3.873 11 C -0.248 4.248 12 C -0.047 4.047 13 C -0.199 4.199 14 C 0.173 3.827 15 N -0.627 5.627 16 C 0.496 3.504 17 O -0.525 6.525 18 C 0.522 3.478 19 O -0.532 6.532 20 N -0.684 5.684 21 C 0.133 3.867 22 C -0.137 4.137 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.131 4.131 26 C -0.208 4.208 27 H 0.272 0.728 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.434 0.566 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -22.137 -5.959 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.138 6.138 10 C 0.076 3.924 11 C -0.268 4.268 12 C -0.065 4.065 13 C -0.220 4.220 14 C 0.080 3.920 15 N -0.275 5.275 16 C 0.278 3.722 17 O -0.400 6.400 18 C 0.302 3.698 19 O -0.409 6.409 20 N -0.336 5.336 21 C 0.030 3.970 22 C -0.175 4.175 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.229 4.229 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.275 0.725 32 H 0.255 0.745 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.310 -22.038 -5.949 22.864 hybrid contribution -0.073 1.136 0.148 1.148 sum -1.383 -20.902 -5.800 21.736 Atomic orbital electron populations 1.70217 1.08230 1.28815 1.48848 1.26684 0.96859 1.02959 0.95801 0.84538 0.77891 0.74220 0.79235 1.18870 1.19731 1.17180 1.21914 0.92739 0.81188 1.53121 0.87507 1.83958 1.36118 1.12620 1.81109 1.19624 0.91703 0.87396 0.93667 1.21390 0.92507 1.00842 1.12036 1.21046 1.00722 0.90180 0.94585 1.20914 0.90837 0.99669 1.10538 1.17309 0.91935 0.83316 0.99483 1.42938 1.22929 1.10267 1.51320 1.20710 0.82061 0.90192 0.79196 1.90866 1.61502 1.38878 1.48755 1.19596 0.82646 0.87744 0.79811 1.90746 1.62467 1.37682 1.49993 1.46096 1.22383 1.12128 1.53023 1.22052 0.93532 0.82131 0.99329 1.22815 0.98998 0.99790 0.95928 1.22482 0.93344 0.98528 1.01252 1.22374 0.99185 0.98941 0.95505 1.22479 0.92453 1.02722 0.99213 1.20162 0.99784 0.90358 1.12612 0.91867 0.85533 0.81985 0.82043 0.72540 0.74548 0.89175 0.91676 0.91379 0.90269 0.90449 0.89826 0.91403 0.89206 0.90703 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.14 13.67 21.61 0.30 -57.84 16 2 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 3 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.41 -24.46 9.49 67.92 0.64 -23.82 16 8 H 0.11 5.68 5.20 -2.91 -0.02 5.66 16 9 O -0.23 -14.49 9.75 -22.80 -0.22 -14.71 16 10 C 0.13 6.61 6.64 22.56 0.15 6.76 16 11 C -0.25 -10.66 9.17 22.42 0.21 -10.45 16 12 C -0.05 -1.51 10.03 22.23 0.22 -1.29 16 13 C -0.20 -5.99 9.96 22.43 0.22 -5.77 16 14 C 0.17 6.29 6.29 38.20 0.24 6.53 16 15 N -0.63 -18.63 5.32 -304.88 -1.62 -20.25 16 16 C 0.50 15.77 7.73 87.24 0.67 16.44 16 17 O -0.52 -20.73 13.91 -3.33 -0.05 -20.78 16 18 C 0.52 13.62 7.88 87.24 0.69 14.31 16 19 O -0.53 -14.67 16.15 -3.28 -0.05 -14.72 16 20 N -0.68 -14.34 5.03 -440.51 -2.22 -16.55 16 21 C 0.13 2.16 3.23 45.72 0.15 2.31 16 22 C -0.14 -2.03 6.54 31.70 0.21 -1.82 16 23 C -0.12 -1.21 6.91 31.91 0.22 -0.99 16 24 C -0.12 -1.20 6.83 31.67 0.22 -0.98 16 25 C -0.13 -1.55 6.57 31.32 0.21 -1.35 16 26 C -0.21 -9.80 8.64 22.52 0.19 -9.60 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.13 5.41 5.63 -2.91 -0.02 5.40 16 29 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 32 H 0.42 8.48 7.78 -92.71 -0.72 7.76 16 33 H 0.09 1.61 7.59 -2.39 -0.02 1.59 16 34 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.08 0.70 8.14 -2.38 -0.02 0.69 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.94 7.61 -2.39 -0.02 0.92 16 42 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 Total: -1.00 -78.34 355.77 2.46 -75.88 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.41 Total: 34.48 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.71 Total: -10.75 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -3.54 Total: -94.65 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.32 Total: -50.21 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -78.34 2.46 -75.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048637230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.616 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds