Wall clock time and date at job start Tue Mar 31 2020 12:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47004 * 269.99737 * 3 2 1 5 5 H 1.48502 * 109.47141 * 29.99750 * 3 2 1 6 6 H 1.48501 * 109.46986 * 149.99685 * 3 2 1 7 7 C 1.37873 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47609 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47389 * 179.97438 * 10 9 7 12 12 C 1.34715 * 116.99839 * 180.02562 * 11 10 9 13 13 O 1.21464 * 120.00327 * 359.97438 * 12 11 10 14 14 C 1.47748 * 119.99640 * 180.02562 * 12 11 10 15 15 C 1.39662 * 120.11820 * 359.97015 * 14 12 11 16 16 C 1.37959 * 119.99101 * 180.02562 * 15 14 12 17 17 C 1.38265 * 120.22636 * 359.74575 * 16 15 14 18 18 C 1.38947 * 120.23296 * 0.51293 * 17 16 15 19 19 N 1.39983 * 119.99558 * 179.76299 * 18 17 16 20 20 C 1.34785 * 119.99750 * 214.82997 * 19 18 17 21 21 O 1.21586 * 120.00049 * 355.39073 * 20 19 18 22 22 N 1.34776 * 119.99637 * 175.38864 * 20 19 18 23 23 C 1.46498 * 119.99652 * 180.02562 * 22 20 19 24 24 C 1.53006 * 117.49854 * 223.47251 * 23 22 20 25 25 C 1.52999 * 117.49975 * 154.81297 * 23 22 20 26 26 C 1.38614 * 120.00847 * 359.48859 * 18 17 16 27 27 H 0.96998 * 120.00524 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47068 * 59.99688 * 9 7 2 29 29 H 1.08998 * 109.47302 * 300.00306 * 9 7 2 30 30 H 1.09006 * 109.47015 * 59.99833 * 10 9 7 31 31 H 1.09007 * 109.47068 * 300.00292 * 10 9 7 32 32 H 1.08006 * 120.00533 * 0.02562 * 15 14 12 33 33 H 1.07999 * 119.89342 * 180.02562 * 16 15 14 34 34 H 1.08002 * 119.88756 * 180.25511 * 17 16 15 35 35 H 0.96992 * 119.99930 * 34.82889 * 19 18 17 36 36 H 0.97004 * 119.99841 * 359.72548 * 22 20 19 37 37 H 1.08999 * 115.55341 * 9.14126 * 23 22 20 38 38 H 1.08995 * 117.49330 * 359.97438 * 24 23 22 39 39 H 1.08998 * 117.49714 * 145.02164 * 24 23 22 40 40 H 1.08998 * 117.50099 * 214.97975 * 25 23 22 41 41 H 1.09004 * 117.49933 * 359.97374 * 25 23 22 42 42 H 1.08000 * 120.11519 * 180.22853 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9195 0.0011 12 6 2.2531 -6.0493 0.0018 13 8 3.4660 -5.9858 0.0013 14 6 1.5823 -7.3657 0.0018 15 6 0.1877 -7.4417 0.0019 16 6 -0.4359 -8.6723 0.0025 17 6 0.3151 -9.8332 -0.0023 18 6 1.7031 -9.7686 0.0031 19 7 2.4585 -10.9471 0.0032 20 6 3.6263 -10.9988 0.6742 21 8 4.0650 -9.9989 1.2090 22 7 4.3078 -12.1590 0.7522 23 6 5.5768 -12.2153 1.4819 24 6 6.7312 -12.9821 0.8334 25 6 6.0072 -13.5704 2.0471 26 6 2.3398 -8.5373 0.0025 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 2.8720 -3.6043 0.8906 31 1 2.8720 -3.6043 -0.8895 32 1 -0.4025 -6.5371 0.0015 33 1 -1.5144 -8.7292 0.0021 34 1 -0.1788 -10.7936 -0.0059 35 1 2.1415 -11.7263 -0.4794 36 1 3.9558 -12.9576 0.3289 37 1 5.8259 -11.3264 2.0614 38 1 6.5462 -13.4449 -0.1359 39 1 7.7396 -12.5978 0.9867 40 1 6.5396 -13.5729 2.9982 41 1 5.3459 -14.4199 1.8764 42 1 3.4185 -8.4851 0.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052231706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:50 Heat of formation + Delta-G solvation = -62.155878 kcal Electronic energy + Delta-G solvation = -24916.214269 eV Core-core repulsion = 21055.340262 eV Total energy + Delta-G solvation = -3860.874007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04065 -39.94051 -38.74752 -37.48690 -35.96362 -35.01142 -33.33687 -33.20504 -31.38419 -30.20314 -29.46530 -25.44461 -23.95586 -23.83113 -22.87886 -22.01681 -21.23473 -21.13703 -20.47296 -18.96872 -18.21282 -16.92238 -16.76776 -16.20085 -15.98204 -15.83200 -15.69835 -15.41887 -15.16341 -14.69184 -14.45966 -14.33949 -13.79597 -13.43916 -13.17524 -12.83189 -12.73088 -12.32281 -12.10358 -11.98903 -11.88150 -11.72852 -11.19192 -10.99453 -10.99298 -10.74793 -10.68064 -10.65437 -10.30071 -10.17732 -9.58199 -9.57657 -9.26652 -9.25836 -9.09131 -8.40497 -8.35218 -6.06788 -4.10668 0.71242 1.21930 2.06082 2.59671 2.88606 3.18484 3.31616 3.37529 3.42619 3.47343 3.63884 3.82458 4.27865 4.42498 4.46346 4.50922 4.74410 4.76763 5.09085 5.13140 5.19231 5.21666 5.29800 5.31486 5.37942 5.45150 5.57968 5.77433 5.93240 6.06412 6.12712 6.16576 6.20774 6.26658 6.39510 6.47528 6.69785 6.79802 7.03190 7.45269 7.60611 7.67270 7.91128 8.11578 8.24572 8.32890 8.94799 9.53403 11.04743 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.002168 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.555584 B =12909.228915 C =14134.299623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.352 6.352 12 C 0.499 3.501 13 O -0.509 6.509 14 C -0.099 4.099 15 C -0.075 4.075 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.143 3.857 19 N -0.684 5.684 20 C 0.704 3.296 21 O -0.560 6.560 22 N -0.713 5.713 23 C 0.099 3.901 24 C -0.194 4.194 25 C -0.190 4.190 26 C -0.060 4.060 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.407 0.593 36 H 0.398 0.602 37 H 0.142 0.858 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -32.103 -0.110 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.268 6.268 12 C 0.343 3.657 13 O -0.399 6.399 14 C -0.100 4.100 15 C -0.094 4.094 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.049 3.951 19 N -0.332 5.332 20 C 0.405 3.595 21 O -0.435 6.435 22 N -0.367 5.367 23 C -0.008 4.008 24 C -0.233 4.233 25 C -0.229 4.229 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.242 0.758 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.902 -31.008 0.414 31.256 hybrid contribution 0.251 0.035 -0.467 0.532 sum 4.153 -30.974 -0.053 31.251 Atomic orbital electron populations 1.69973 1.06061 1.26927 1.49916 1.24980 0.94929 0.99365 0.94922 0.86469 0.79785 0.82831 0.78208 1.20510 1.21078 1.19721 1.20989 0.93218 0.90122 1.52002 0.92238 1.19172 0.94193 0.88979 0.98892 1.23670 0.96423 0.78542 1.01077 1.86557 1.41913 1.15542 1.82798 1.21061 0.85697 0.85491 0.73418 1.90807 1.15059 1.88275 1.45712 1.19161 0.93772 0.90666 1.06439 1.21615 0.93350 0.99103 0.95286 1.20934 1.00231 0.91304 1.00784 1.21059 0.91475 0.99480 1.01758 1.17211 0.89834 0.85007 1.03014 1.42432 1.21905 1.14558 1.54257 1.15866 0.80256 0.83939 0.79463 1.91023 1.68441 1.33422 1.50596 1.44420 1.23263 1.10555 1.58416 1.21498 0.83177 0.97436 0.98669 1.23481 0.97990 1.04376 0.97472 1.23425 1.03822 0.96829 0.98778 1.21411 1.02171 0.89191 0.95219 0.92758 0.95315 0.95283 0.92211 0.92230 0.83741 0.84643 0.85315 0.75752 0.76807 0.84027 0.88499 0.87757 0.87684 0.88510 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.66 5.35 -27.89 -0.15 0.51 16 10 C 0.08 1.76 5.41 37.16 0.20 1.97 16 11 O -0.35 -7.50 9.47 -40.53 -0.38 -7.88 16 12 C 0.50 10.01 7.90 34.62 0.27 10.29 16 13 O -0.51 -11.49 16.13 -19.24 -0.31 -11.80 16 14 C -0.10 -1.59 5.87 -105.00 -0.62 -2.21 16 15 C -0.07 -0.98 9.61 -39.15 -0.38 -1.36 16 16 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 17 C -0.12 -1.04 9.96 -39.31 -0.39 -1.43 16 18 C 0.14 1.62 6.29 -83.73 -0.53 1.09 16 19 N -0.68 -5.73 5.34 -14.25 -0.08 -5.81 16 20 C 0.70 7.56 8.41 -86.91 -0.73 6.83 16 21 O -0.56 -8.85 13.34 5.29 0.07 -8.78 16 22 N -0.71 -4.92 5.57 -58.67 -0.33 -5.25 16 23 C 0.10 0.71 6.43 -67.93 -0.44 0.28 16 24 C -0.19 -1.03 10.46 -26.69 -0.28 -1.31 16 25 C -0.19 -0.89 10.46 -26.69 -0.28 -1.17 16 26 C -0.06 -0.90 8.24 -38.97 -0.32 -1.23 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.14 1.89 7.61 -52.48 -0.40 1.49 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.41 1.67 8.84 -40.82 -0.36 1.31 16 36 H 0.40 1.35 8.85 -40.82 -0.36 0.99 16 37 H 0.14 1.32 7.40 -51.93 -0.38 0.94 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.16 2.74 5.81 -52.49 -0.30 2.43 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -36.10 368.77 -9.77 -45.88 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.58 Total: 0.28 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.44 Total: -3.03 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.33 Total: -36.98 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.62 Total: -28.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.10 -9.77 -45.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052231706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.279 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds