Wall clock time and date at job start Tue Mar 31 2020 13:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50707 * 120.51441 * 180.22969 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.20818 * 120.00061 * 0.02562 * 15 14 13 17 17 O 1.34228 * 119.99729 * 179.97438 * 15 14 13 18 18 C 1.45202 * 116.99961 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47054 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.47136 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99970 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99919 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47027 * 60.00005 * 24 22 20 26 26 H 1.48500 * 109.47177 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47073 * 300.00308 * 24 22 20 28 28 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 29 29 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 30 30 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 31 31 H 1.09001 * 109.46840 * 359.97438 * 11 10 7 32 32 H 1.08991 * 109.46979 * 120.00063 * 11 10 7 33 33 H 1.09003 * 109.46920 * 240.00715 * 11 10 7 34 34 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 35 35 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 36 36 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 37 37 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 38 38 H 1.08991 * 109.47372 * 300.01036 * 18 17 15 39 39 H 1.09002 * 109.46499 * 60.00807 * 18 17 15 40 40 H 1.09003 * 109.47272 * 300.00301 * 19 18 17 41 41 H 1.09000 * 109.46894 * 60.00325 * 19 18 17 42 42 H 0.97004 * 120.00074 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0010 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0971 -4.7505 -0.3952 17 8 0.2287 -4.9058 -2.5956 18 6 -0.5167 -6.1496 -2.5203 19 6 -0.7086 -6.7153 -3.9288 20 6 -1.4828 -8.0058 -3.8507 21 1 -1.8061 -8.3845 -2.8923 22 6 -1.7785 -8.7032 -5.0028 23 7 -1.3845 -8.2424 -6.1698 24 14 -2.7375 -10.3033 -4.9059 25 1 -4.0647 -10.0484 -4.2902 26 1 -2.9228 -10.8529 -6.2729 27 1 -1.9870 -11.2808 -4.0773 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8903 -0.5134 31 1 5.3890 -2.3136 0.0005 32 1 4.0509 -3.0789 0.8909 33 1 4.0509 -3.0790 -0.8891 34 1 1.9424 -3.2203 0.5897 35 1 0.4175 -2.3156 0.4342 36 1 0.7140 -2.2388 -2.0266 37 1 2.2389 -3.1435 -1.8710 38 1 0.0344 -6.8673 -1.9128 39 1 -1.4906 -5.9626 -2.0677 40 1 -1.2597 -5.9976 -4.5366 41 1 0.2654 -6.9022 -4.3810 42 1 -1.5921 -8.7332 -6.9803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053920818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:01 Heat of formation + Delta-G solvation = -90.960586 kcal Electronic energy + Delta-G solvation = -25236.243847 eV Core-core repulsion = 21374.120774 eV Total energy + Delta-G solvation = -3862.123073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05539 -40.12131 -38.36038 -37.16121 -36.37420 -35.43149 -33.99240 -33.40401 -31.26040 -30.26548 -29.34140 -28.46231 -25.61080 -24.41623 -23.19512 -22.48999 -21.17508 -20.45396 -19.48796 -18.52472 -17.46083 -17.23570 -16.49135 -16.34883 -16.21523 -16.01686 -15.79752 -14.75646 -14.58681 -14.38089 -14.25570 -14.04953 -13.73328 -13.59529 -13.36709 -13.29262 -12.99456 -12.86366 -12.69075 -12.59254 -12.37764 -12.29365 -12.01984 -11.82031 -11.35448 -11.26992 -11.11652 -10.79857 -10.76198 -10.62687 -10.38465 -10.27144 -9.72743 -9.68390 -9.37304 -8.49569 -8.44821 -6.15648 -4.20484 -0.16903 1.17204 2.07015 2.42868 2.44264 2.62096 3.07586 3.25935 3.30673 3.33635 3.39703 3.61827 3.72623 3.93546 4.15651 4.33112 4.43057 4.60358 4.65502 4.68628 4.78418 4.87103 5.02093 5.09992 5.18310 5.20993 5.24002 5.30318 5.40308 5.44687 5.62172 5.71042 5.80954 6.00406 6.01128 6.03344 6.26127 6.56144 6.91008 7.33723 7.45091 7.48952 7.55345 7.80334 8.08961 8.18704 8.84946 9.44322 10.95711 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002130 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.203357 B =13141.190506 C =13638.270405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 N -0.598 5.598 4 H 0.422 0.578 5 C 0.545 3.455 6 O -0.537 6.537 7 C -0.186 4.186 8 C 0.283 3.717 9 N -0.423 5.423 10 C 0.107 3.893 11 C -0.142 4.142 12 C -0.204 4.204 13 C -0.055 4.055 14 C -0.117 4.117 15 C 0.453 3.547 16 O -0.519 6.519 17 O -0.358 6.358 18 C 0.075 3.925 19 C 0.024 3.976 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 17.424 13.382 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.099 3.901 3 N -0.229 5.229 4 H 0.261 0.739 5 C 0.343 3.657 6 O -0.417 6.417 7 C -0.193 4.193 8 C -0.032 4.032 9 N -0.099 5.099 10 C 0.100 3.900 11 C -0.198 4.198 12 C -0.209 4.209 13 C -0.093 4.093 14 C -0.155 4.155 15 C 0.297 3.703 16 O -0.409 6.409 17 O -0.274 6.274 18 C 0.003 3.997 19 C -0.013 4.013 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.233 17.822 13.460 22.939 hybrid contribution -1.266 -0.579 -0.025 1.392 sum 3.967 17.243 13.435 22.216 Atomic orbital electron populations 1.21361 0.87149 1.05998 1.05330 1.20628 0.95367 0.85137 0.88940 1.43468 1.08541 1.09420 1.61504 0.73890 1.16519 0.80740 0.89798 0.78600 1.91022 1.67579 1.31020 1.52083 1.16559 0.86260 0.92903 1.23599 1.24575 0.91505 0.93648 0.93429 1.81232 1.11632 1.06982 1.10058 1.20572 0.92799 0.94582 0.82076 1.21237 1.00363 0.93381 1.04840 1.18737 0.92230 0.94498 1.15398 1.20252 1.01059 0.92241 0.95736 1.21427 1.01965 0.93128 0.98970 1.23481 0.77932 0.86426 0.82506 1.90640 1.50024 1.66783 1.33413 1.86532 1.68232 1.38892 1.33717 1.23646 0.93416 0.79679 1.02954 1.19166 0.98227 0.95541 0.88344 1.20933 1.35999 1.06362 0.93365 0.92312 1.24979 0.95828 0.98069 0.95233 1.69955 1.45759 1.39268 0.97813 0.86535 0.80405 0.83167 0.77209 1.20052 1.21114 1.20048 0.88051 0.89563 0.87651 0.90732 0.88390 0.88411 0.89001 0.89065 0.87654 0.87628 0.92279 0.92284 0.95394 0.95371 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.17 9.20 36.01 0.33 0.16 16 2 C 0.21 0.81 6.80 -81.88 -0.56 0.26 16 3 N -0.60 -3.06 5.22 -10.88 -0.06 -3.12 16 4 H 0.42 1.14 8.75 -40.82 -0.36 0.78 16 5 C 0.55 5.23 7.72 -14.89 -0.12 5.12 16 6 O -0.54 -7.36 17.39 5.01 0.09 -7.27 16 7 C -0.19 -1.74 5.79 -106.17 -0.62 -2.36 16 8 C 0.28 3.45 13.22 -22.47 -0.30 3.15 16 9 N -0.42 -6.02 18.54 41.83 0.78 -5.24 16 10 C 0.11 0.72 5.96 -103.75 -0.62 0.10 16 11 C -0.14 -0.82 8.84 36.01 0.32 -0.51 16 12 C -0.20 -1.05 5.09 -105.05 -0.54 -1.58 16 13 C -0.06 -0.32 3.48 -27.88 -0.10 -0.41 16 14 C -0.12 -0.89 5.70 -27.88 -0.16 -1.05 16 15 C 0.45 6.11 7.96 36.01 0.29 6.40 16 16 O -0.52 -8.20 15.73 -18.74 -0.29 -8.50 16 17 O -0.36 -6.19 10.22 -39.25 -0.40 -6.59 16 18 C 0.08 1.53 5.40 37.16 0.20 1.74 16 19 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 20 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 24 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.10 0.18 6.06 -51.93 -0.31 -0.14 16 31 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 32 H 0.10 0.44 7.57 -51.93 -0.39 0.05 16 33 H 0.10 0.48 6.87 -51.93 -0.36 0.13 16 34 H 0.09 0.57 6.88 -51.93 -0.36 0.21 16 35 H 0.09 0.47 6.27 -51.93 -0.33 0.14 16 36 H 0.11 0.61 7.80 -51.93 -0.41 0.20 16 37 H 0.11 0.69 6.87 -51.93 -0.36 0.33 16 38 H 0.06 1.20 8.13 -51.93 -0.42 0.77 16 39 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -36.16 364.79 -6.38 -42.53 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -5.28 Total: -6.60 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.42 Total: -1.54 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 1.46 Total: -33.23 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.61 Total: -22.36 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.16 -6.38 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053920818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.427 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds