Wall clock time and date at job start Tue Mar 31 2020 13:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50707 * 120.51441 * 180.22969 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.20818 * 120.00061 * 0.02562 * 15 14 13 17 17 O 1.34228 * 119.99729 * 179.97438 * 15 14 13 18 18 C 1.45202 * 116.99961 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47054 * 180.02562 * 18 17 15 20 20 C 1.50703 * 109.47136 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99970 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99919 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47027 * 60.00005 * 24 22 20 26 26 H 1.48500 * 109.47177 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47073 * 300.00308 * 24 22 20 28 28 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 29 29 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 30 30 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 31 31 H 1.09001 * 109.46840 * 359.97438 * 11 10 7 32 32 H 1.08991 * 109.46979 * 120.00063 * 11 10 7 33 33 H 1.09003 * 109.46920 * 240.00715 * 11 10 7 34 34 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 35 35 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 36 36 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 37 37 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 38 38 H 1.08991 * 109.47372 * 300.01036 * 18 17 15 39 39 H 1.09002 * 109.46499 * 60.00807 * 18 17 15 40 40 H 1.09003 * 109.47272 * 300.00301 * 19 18 17 41 41 H 1.09000 * 109.46894 * 60.00325 * 19 18 17 42 42 H 0.97004 * 120.00074 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0010 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0971 -4.7505 -0.3952 17 8 0.2287 -4.9058 -2.5956 18 6 -0.5167 -6.1496 -2.5203 19 6 -0.7086 -6.7153 -3.9288 20 6 -1.4828 -8.0058 -3.8507 21 1 -1.8061 -8.3845 -2.8923 22 6 -1.7785 -8.7032 -5.0028 23 7 -1.3845 -8.2424 -6.1698 24 14 -2.7375 -10.3033 -4.9059 25 1 -4.0647 -10.0484 -4.2902 26 1 -2.9228 -10.8529 -6.2729 27 1 -1.9870 -11.2808 -4.0773 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8903 -0.5134 31 1 5.3890 -2.3136 0.0005 32 1 4.0509 -3.0789 0.8909 33 1 4.0509 -3.0790 -0.8891 34 1 1.9424 -3.2203 0.5897 35 1 0.4175 -2.3156 0.4342 36 1 0.7140 -2.2388 -2.0266 37 1 2.2389 -3.1435 -1.8710 38 1 0.0344 -6.8673 -1.9128 39 1 -1.4906 -5.9626 -2.0677 40 1 -1.2597 -5.9976 -4.5366 41 1 0.2654 -6.9022 -4.3810 42 1 -1.5921 -8.7332 -6.9803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053920818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:00 Heat of formation + Delta-G solvation = -114.392993 kcal Electronic energy + Delta-G solvation = -25237.259952 eV Core-core repulsion = 21374.120774 eV Total energy + Delta-G solvation = -3863.139178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64426 -41.29117 -39.07488 -37.97323 -37.64235 -36.14395 -35.39206 -34.62535 -32.40248 -31.50752 -29.92656 -28.94194 -27.13994 -25.44890 -23.86380 -23.01038 -22.88293 -21.58888 -20.10495 -19.14827 -18.81611 -18.00523 -17.85186 -17.49729 -17.26924 -16.84909 -16.69841 -16.41521 -15.61619 -14.95705 -14.77301 -14.74048 -14.56661 -14.48713 -14.33977 -14.20881 -14.05743 -13.97274 -13.48399 -13.42143 -13.28217 -12.99757 -12.96113 -12.70565 -12.58238 -12.52843 -12.49779 -12.32578 -11.83206 -11.78315 -11.45591 -11.37339 -11.34473 -11.21874 -10.86688 -10.57046 -9.06265 -8.23755 -6.36408 -0.69484 0.59029 1.37330 1.40593 1.44069 1.46806 1.54708 1.66717 1.86430 2.00470 2.43694 2.64309 2.95870 3.11029 3.34831 3.38775 3.66582 3.75406 3.97739 4.16588 4.21483 4.31785 4.34537 4.41306 4.41882 4.58358 4.68263 4.75895 4.79859 4.80138 4.91697 4.93015 5.11825 5.19827 5.22167 5.35229 5.38329 5.53562 5.61871 5.68377 5.71160 5.85457 6.11241 6.49068 6.77494 6.80236 6.91675 7.33566 8.88361 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.002130 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.203357 B =13141.190506 C =13638.270405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.246 3.754 3 N -0.582 5.582 4 H 0.436 0.564 5 C 0.544 3.456 6 O -0.590 6.590 7 C -0.228 4.228 8 C 0.299 3.701 9 N -0.479 5.479 10 C 0.133 3.867 11 C -0.147 4.147 12 C -0.209 4.209 13 C -0.048 4.048 14 C -0.110 4.110 15 C 0.452 3.548 16 O -0.541 6.541 17 O -0.371 6.371 18 C 0.092 3.908 19 C 0.028 3.972 20 C -0.549 4.549 21 H 0.066 0.934 22 C 0.006 3.994 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.283 1.283 27 H -0.267 1.267 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.004 0.996 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 17.159 14.419 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.132 3.868 3 N -0.212 5.212 4 H 0.278 0.722 5 C 0.344 3.656 6 O -0.475 6.475 7 C -0.236 4.236 8 C -0.014 4.014 9 N -0.157 5.157 10 C 0.125 3.875 11 C -0.203 4.203 12 C -0.214 4.214 13 C -0.086 4.086 14 C -0.147 4.147 15 C 0.297 3.703 16 O -0.431 6.431 17 O -0.288 6.288 18 C 0.019 3.981 19 C -0.009 4.009 20 C -0.587 4.587 21 H 0.084 0.916 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.208 1.208 27 H -0.191 1.191 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.663 17.567 14.520 22.946 hybrid contribution -0.619 -0.478 -0.313 0.842 sum 2.044 17.090 14.207 22.318 Atomic orbital electron populations 1.21595 0.84224 1.07379 1.06983 1.21140 0.96818 0.84026 0.84856 1.43323 1.07273 1.10787 1.59824 0.72154 1.16547 0.81936 0.88981 0.78130 1.90990 1.68954 1.32607 1.54903 1.16542 0.84952 0.94009 1.28082 1.25110 0.92220 0.92178 0.91916 1.81209 1.13156 1.08643 1.12704 1.20669 0.93472 0.93817 0.79517 1.21342 0.99424 0.93290 1.06210 1.18645 0.91227 0.94929 1.16580 1.20212 1.01854 0.92046 0.94457 1.21637 1.01944 0.90196 1.00918 1.24597 0.77390 0.87363 0.80911 1.90634 1.51040 1.67636 1.33816 1.86524 1.68282 1.37780 1.36175 1.23056 0.94092 0.81286 0.99666 1.18978 0.96281 0.94899 0.90713 1.21378 1.36158 1.07327 0.93804 0.91618 1.25934 0.96786 1.01774 0.94811 1.70081 1.47069 1.40927 0.98585 0.85432 0.79193 0.78646 0.77385 1.18931 1.20805 1.19141 0.85958 0.87325 0.87150 0.92313 0.86678 0.87086 0.89147 0.87654 0.84953 0.86143 0.92393 0.92027 0.97520 0.97767 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.42 9.20 71.24 0.66 1.08 16 2 C 0.25 0.89 6.80 41.40 0.28 1.17 16 3 N -0.58 -4.43 5.22 -306.53 -1.60 -6.03 16 4 H 0.44 1.08 8.75 -92.71 -0.81 0.27 16 5 C 0.54 10.15 7.72 85.18 0.66 10.80 16 6 O -0.59 -16.68 17.39 -4.99 -0.09 -16.76 16 7 C -0.23 -4.23 5.79 -20.87 -0.12 -4.35 16 8 C 0.30 7.69 13.22 88.33 1.17 8.86 16 9 N -0.48 -14.64 18.54 19.00 0.35 -14.29 16 10 C 0.13 1.53 5.96 -19.30 -0.11 1.41 16 11 C -0.15 -1.48 8.84 71.24 0.63 -0.85 16 12 C -0.21 -1.41 5.09 -20.14 -0.10 -1.51 16 13 C -0.05 -0.36 3.48 29.85 0.10 -0.25 16 14 C -0.11 -1.24 5.70 29.85 0.17 -1.07 16 15 C 0.45 11.02 7.96 71.24 0.57 11.59 16 16 O -0.54 -15.78 15.73 21.99 0.35 -15.43 16 17 O -0.37 -12.34 10.22 -51.40 -0.53 -12.87 16 18 C 0.09 3.71 5.40 71.98 0.39 4.10 16 19 C 0.03 1.44 5.35 29.85 0.16 1.60 16 20 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 21 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.01 0.32 5.46 84.66 0.46 0.79 16 23 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 24 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H 0.11 -0.67 8.14 -2.39 -0.02 -0.68 16 30 H 0.11 -0.26 6.06 -2.39 -0.01 -0.28 16 31 H 0.06 0.82 6.53 -2.39 -0.02 0.80 16 32 H 0.12 0.79 7.57 -2.39 -0.02 0.77 16 33 H 0.11 0.84 6.87 -2.39 -0.02 0.83 16 34 H 0.09 0.78 6.88 -2.39 -0.02 0.76 16 35 H 0.11 0.56 6.27 -2.39 -0.01 0.55 16 36 H 0.13 0.87 7.80 -2.39 -0.02 0.85 16 37 H 0.12 1.10 6.87 -2.39 -0.02 1.09 16 38 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 39 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -82.60 364.79 6.20 -76.39 By element: Atomic # 1 Polarization: -5.56 SS G_CDS: 0.27 Total: -5.30 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.14 Total: 3.92 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -0.96 Total: -73.96 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.27 Total: -45.06 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -82.60 6.20 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053920818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.998 kcal (2) G-P(sol) polarization free energy of solvation -82.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds