Wall clock time and date at job start Tue Mar 31 2020 13:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38738 * 120.05353 * 359.72616 * 3 2 1 5 5 C 1.38148 * 119.94048 * 179.74738 * 4 3 2 6 6 C 1.38261 * 120.05800 * 0.50500 * 5 4 3 7 7 C 1.50703 * 119.94589 * 179.75166 * 6 5 4 8 8 C 1.53004 * 110.53115 * 271.39455 * 7 6 5 9 9 N 1.47306 * 110.59912 * 148.56693 * 7 6 5 10 10 C 1.34531 * 106.61832 * 241.46766 * 9 7 6 11 11 O 1.21531 * 123.77282 * 180.02562 * 10 9 7 12 12 N 1.33791 * 112.45524 * 0.02562 * 10 9 7 13 13 C 1.46503 * 124.17619 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46840 * 90.02844 * 13 12 10 15 15 C 1.50699 * 109.47093 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99879 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46401 * 90.00536 * 19 17 15 21 21 H 1.48493 * 109.47393 * 210.00427 * 19 17 15 22 22 H 1.48497 * 109.47281 * 330.00946 * 19 17 15 23 23 C 1.34766 * 111.64715 * 0.02562 * 12 10 9 24 24 O 1.21236 * 127.15904 * 180.02562 * 23 12 10 25 25 C 1.38262 * 120.11048 * 359.76434 * 6 5 4 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97067 * 180.22662 * 5 4 3 32 32 H 1.09000 * 109.46822 * 59.99614 * 8 7 6 33 33 H 1.08996 * 109.47278 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47097 * 300.00215 * 8 7 6 35 35 H 0.96998 * 126.69374 * 61.51012 * 9 7 6 36 36 H 1.09003 * 109.46948 * 210.02903 * 13 12 10 37 37 H 1.08999 * 109.46904 * 330.02890 * 13 12 10 38 38 H 1.09002 * 109.46891 * 299.99931 * 14 13 12 39 39 H 1.08997 * 109.46864 * 60.00094 * 14 13 12 40 40 H 0.97006 * 120.00045 * 179.97438 * 18 17 15 41 41 H 1.08009 * 119.97583 * 179.97438 * 25 6 5 42 42 H 1.08000 * 120.03441 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3751 -0.0057 5 6 1.9211 3.6048 -0.0004 6 6 3.3019 3.6758 0.0000 7 6 3.9860 5.0186 0.0001 8 6 4.1991 5.5124 -1.4323 9 7 5.2694 4.9463 0.7197 10 6 5.1750 5.7931 1.7607 11 8 6.0674 5.9772 2.5649 12 7 3.9889 6.4100 1.8118 13 6 3.6112 7.3836 2.8393 14 6 3.9987 8.7895 2.3767 15 6 3.6097 9.7911 3.4333 16 1 3.1340 9.4581 4.3440 17 6 3.8619 11.1325 3.2379 18 7 4.4416 11.5378 2.1293 19 14 3.3790 12.3741 4.5474 20 1 4.5060 12.5550 5.4974 21 1 3.0607 13.6739 3.9038 22 1 2.1867 11.8803 5.2821 23 6 3.1841 6.0244 0.8020 24 8 2.0543 6.4042 0.5801 25 6 4.0560 2.5170 0.0001 26 6 3.4314 1.2849 0.0003 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2130 2.3201 -0.0106 31 1 1.3342 4.5114 -0.0012 32 1 3.2346 5.6068 -1.9312 33 1 4.6946 6.4830 -1.4121 34 1 4.8201 4.7990 -1.9740 35 1 6.0337 4.3960 0.4877 36 1 2.5346 7.3390 3.0038 37 1 4.1308 7.1508 3.7688 38 1 5.0753 8.8340 2.2122 39 1 3.4792 9.0222 1.4472 40 1 4.6187 12.4816 1.9916 41 1 5.1346 2.5751 0.0000 42 1 4.0209 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057850031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:56 Heat of formation + Delta-G solvation = -53.882239 kcal Electronic energy + Delta-G solvation = -26669.507169 eV Core-core repulsion = 22808.991935 eV Total energy + Delta-G solvation = -3860.515235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39800 -40.32141 -38.46036 -37.86399 -35.97077 -35.19158 -33.05916 -31.66126 -31.13639 -29.88102 -29.36879 -27.55232 -25.67543 -24.39671 -23.13582 -22.76080 -21.93452 -20.80448 -19.74312 -18.54688 -17.73856 -16.98342 -16.67668 -16.43186 -16.07290 -15.95321 -15.27965 -15.09899 -14.81900 -14.59269 -14.34915 -14.05683 -13.92970 -13.85322 -13.29332 -12.96349 -12.91874 -12.78423 -12.57820 -12.35540 -12.31279 -11.84823 -11.56960 -11.31685 -11.17279 -10.96194 -10.86038 -10.46603 -10.15156 -10.08510 -9.77634 -9.47911 -9.26433 -9.25110 -8.89494 -8.42691 -8.39087 -6.03997 -4.07722 1.02683 1.09945 1.87278 2.55945 2.93952 3.19208 3.32669 3.37641 3.38525 3.42164 3.53778 4.02729 4.26377 4.44684 4.55073 4.60449 4.75298 4.80694 4.82063 5.08252 5.13225 5.19050 5.32681 5.34026 5.36280 5.45102 5.54970 5.78231 5.86376 5.96239 6.01300 6.11143 6.12483 6.28967 6.31720 6.42325 6.64681 6.89808 7.06161 7.36012 7.56866 7.66842 7.71241 7.92854 8.27695 8.44345 8.97274 9.56316 11.07735 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003017 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.611602 B = 9278.656594 C = 9755.046717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.203 4.203 5 C -0.065 4.065 6 C -0.126 4.126 7 C 0.167 3.833 8 C -0.142 4.142 9 N -0.726 5.726 10 C 0.704 3.296 11 O -0.536 6.536 12 N -0.565 5.565 13 C 0.119 3.881 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.533 3.467 24 O -0.465 6.465 25 C -0.058 4.058 26 C -0.152 4.152 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.434 0.566 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.024 0.976 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -23.081 -9.088 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.085 3.915 4 C -0.222 4.222 5 C -0.083 4.083 6 C -0.128 4.128 7 C 0.076 3.924 8 C -0.200 4.200 9 N -0.391 5.391 10 C 0.405 3.595 11 O -0.409 6.409 12 N -0.309 5.309 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C 0.319 3.681 24 O -0.335 6.335 25 C -0.076 4.076 26 C -0.171 4.171 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.278 0.722 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.706 -22.696 -8.749 24.775 hybrid contribution -0.094 0.663 0.522 0.849 sum -4.800 -22.034 -8.227 24.004 Atomic orbital electron populations 1.23087 0.78195 1.03988 1.01641 1.86062 1.21573 1.26937 1.88576 1.19118 0.92436 0.84192 0.95710 1.21237 1.00279 0.91910 1.08789 1.21225 0.93792 0.98558 0.94737 1.19344 0.93847 0.92650 1.06930 1.20072 0.84057 0.93158 0.95117 1.21992 1.04131 1.02494 0.91375 1.45639 1.16842 1.47277 1.29375 1.15906 0.82715 0.78945 0.81967 1.91003 1.40402 1.66866 1.42599 1.46692 1.14725 1.40835 1.28696 1.22237 1.00751 0.88812 0.88218 1.19410 0.97685 0.87919 0.97503 1.20993 1.40174 0.91460 1.03424 0.92225 1.24992 0.94979 0.98560 0.95681 1.69969 1.42169 1.15726 1.25190 0.86504 0.78922 0.80528 0.81534 1.20534 1.21168 1.19724 1.20466 0.85900 0.80898 0.80817 1.90725 1.15879 1.57137 1.69724 1.20629 0.99707 0.90554 0.96711 1.20347 0.91359 0.98414 1.06944 0.88205 0.92440 0.92464 0.85060 0.83658 0.89805 0.90614 0.90410 0.72209 0.89856 0.89626 0.95739 0.96019 0.92844 0.85271 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.41 -0.20 -3.22 16 3 C 0.13 1.34 6.69 -39.21 -0.26 1.08 16 4 C -0.20 -2.08 9.04 -39.43 -0.36 -2.43 16 5 C -0.06 -0.76 9.17 -39.61 -0.36 -1.12 16 6 C -0.13 -1.44 4.87 -104.60 -0.51 -1.95 16 7 C 0.17 2.12 1.16 -133.25 -0.15 1.97 16 8 C -0.14 -1.49 8.97 37.16 0.33 -1.16 16 9 N -0.73 -9.30 5.29 -54.02 -0.29 -9.59 16 10 C 0.70 12.71 8.62 -88.02 -0.76 11.95 16 11 O -0.54 -11.52 17.48 5.34 0.09 -11.42 16 12 N -0.57 -10.79 2.60 -120.73 -0.31 -11.10 16 13 C 0.12 2.58 5.64 -4.04 -0.02 2.56 16 14 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.53 9.10 6.53 -10.56 -0.07 9.03 16 24 O -0.46 -8.70 15.67 5.60 0.09 -8.62 16 25 C -0.06 -0.55 9.34 -39.61 -0.37 -0.92 16 26 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 31 H 0.15 1.86 5.78 -52.48 -0.30 1.55 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.43 4.10 8.09 -40.82 -0.33 3.77 16 36 H 0.08 1.74 8.00 -51.93 -0.42 1.32 16 37 H 0.09 1.85 7.86 -51.93 -0.41 1.44 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.13 0.93 6.94 -52.48 -0.36 0.57 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -34.84 356.65 -7.48 -42.32 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.45 Total: 0.89 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.49 Total: 4.93 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.14 Total: -47.04 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.02 Total: -23.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.84 -7.48 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.565 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds