Wall clock time and date at job start Tue Mar 31 2020 13:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38738 * 120.05353 * 359.72616 * 3 2 1 5 5 C 1.38148 * 119.94048 * 179.74738 * 4 3 2 6 6 C 1.38261 * 120.05800 * 0.50500 * 5 4 3 7 7 C 1.50703 * 119.94589 * 179.75166 * 6 5 4 8 8 C 1.53004 * 110.53115 * 271.39455 * 7 6 5 9 9 N 1.47306 * 110.59912 * 148.56693 * 7 6 5 10 10 C 1.34531 * 106.61832 * 241.46766 * 9 7 6 11 11 O 1.21531 * 123.77282 * 180.02562 * 10 9 7 12 12 N 1.33791 * 112.45524 * 0.02562 * 10 9 7 13 13 C 1.46503 * 124.17619 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46840 * 90.02844 * 13 12 10 15 15 C 1.50699 * 109.47093 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99810 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99879 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46401 * 90.00536 * 19 17 15 21 21 H 1.48493 * 109.47393 * 210.00427 * 19 17 15 22 22 H 1.48497 * 109.47281 * 330.00946 * 19 17 15 23 23 C 1.34766 * 111.64715 * 0.02562 * 12 10 9 24 24 O 1.21236 * 127.15904 * 180.02562 * 23 12 10 25 25 C 1.38262 * 120.11048 * 359.76434 * 6 5 4 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 6 5 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.97067 * 180.22662 * 5 4 3 32 32 H 1.09000 * 109.46822 * 59.99614 * 8 7 6 33 33 H 1.08996 * 109.47278 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47097 * 300.00215 * 8 7 6 35 35 H 0.96998 * 126.69374 * 61.51012 * 9 7 6 36 36 H 1.09003 * 109.46948 * 210.02903 * 13 12 10 37 37 H 1.08999 * 109.46904 * 330.02890 * 13 12 10 38 38 H 1.09002 * 109.46891 * 299.99931 * 14 13 12 39 39 H 1.08997 * 109.46864 * 60.00094 * 14 13 12 40 40 H 0.97006 * 120.00045 * 179.97438 * 18 17 15 41 41 H 1.08009 * 119.97583 * 179.97438 * 25 6 5 42 42 H 1.08000 * 120.03441 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3751 -0.0057 5 6 1.9211 3.6048 -0.0004 6 6 3.3019 3.6758 0.0000 7 6 3.9860 5.0186 0.0001 8 6 4.1991 5.5124 -1.4323 9 7 5.2694 4.9463 0.7197 10 6 5.1750 5.7931 1.7607 11 8 6.0674 5.9772 2.5649 12 7 3.9889 6.4100 1.8118 13 6 3.6112 7.3836 2.8393 14 6 3.9987 8.7895 2.3767 15 6 3.6097 9.7911 3.4333 16 1 3.1340 9.4581 4.3440 17 6 3.8619 11.1325 3.2379 18 7 4.4416 11.5378 2.1293 19 14 3.3790 12.3741 4.5474 20 1 4.5060 12.5550 5.4974 21 1 3.0607 13.6739 3.9038 22 1 2.1867 11.8803 5.2821 23 6 3.1841 6.0244 0.8020 24 8 2.0543 6.4042 0.5801 25 6 4.0560 2.5170 0.0001 26 6 3.4314 1.2849 0.0003 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2130 2.3201 -0.0106 31 1 1.3342 4.5114 -0.0012 32 1 3.2346 5.6068 -1.9312 33 1 4.6946 6.4830 -1.4121 34 1 4.8201 4.7990 -1.9740 35 1 6.0337 4.3960 0.4877 36 1 2.5346 7.3390 3.0038 37 1 4.1308 7.1508 3.7688 38 1 5.0753 8.8340 2.2122 39 1 3.4792 9.0222 1.4472 40 1 4.6187 12.4816 1.9916 41 1 5.1346 2.5751 0.0000 42 1 4.0209 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057850031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:55 Heat of formation + Delta-G solvation = -77.513300 kcal Electronic energy + Delta-G solvation = -26670.531889 eV Core-core repulsion = 22808.991935 eV Total energy + Delta-G solvation = -3861.539954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.72618 -41.09282 -39.81696 -38.83305 -37.26768 -36.76356 -35.06164 -32.71020 -32.19076 -31.57974 -30.15970 -28.14467 -27.51759 -25.69865 -24.28013 -23.91615 -23.44159 -21.92511 -21.18987 -19.38871 -19.02703 -18.63225 -18.10268 -17.57471 -17.27990 -16.65880 -16.59220 -16.47659 -16.31131 -16.13534 -15.51350 -15.23167 -14.94825 -14.91932 -14.66102 -14.39098 -14.18382 -13.76270 -13.64779 -13.55305 -13.43258 -12.94821 -12.89009 -12.75385 -12.66657 -12.13769 -12.12035 -12.03880 -11.99181 -11.80441 -11.44608 -11.11127 -10.79293 -10.62591 -10.52743 -10.03427 -9.21204 -8.26071 -6.39111 0.20936 0.31741 0.52203 1.17723 1.40421 1.42507 1.53656 1.92638 2.06559 2.33787 2.39241 2.67579 2.81321 3.08244 3.29106 3.74591 3.83126 3.90274 3.97423 4.27126 4.35149 4.39042 4.39668 4.41357 4.47229 4.50896 4.58781 4.62839 4.68937 4.73240 4.75340 5.02624 5.05718 5.17502 5.31556 5.34115 5.38807 5.46957 5.66548 5.70554 5.76753 6.05672 6.07147 6.31511 6.38016 6.74612 7.06871 7.30652 8.86839 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003017 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.611602 B = 9278.656594 C = 9755.046717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.126 3.874 4 C -0.206 4.206 5 C -0.079 4.079 6 C -0.137 4.137 7 C 0.183 3.817 8 C -0.140 4.140 9 N -0.696 5.696 10 C 0.700 3.300 11 O -0.576 6.576 12 N -0.578 5.578 13 C 0.133 3.867 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.259 1.259 23 C 0.523 3.477 24 O -0.486 6.486 25 C -0.051 4.051 26 C -0.154 4.154 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.453 0.547 36 H 0.090 0.910 37 H 0.086 0.914 38 H -0.010 1.010 39 H -0.008 1.008 40 H 0.266 0.734 41 H 0.156 0.844 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -24.986 -9.237 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.081 3.919 4 C -0.225 4.225 5 C -0.098 4.098 6 C -0.139 4.139 7 C 0.092 3.908 8 C -0.198 4.198 9 N -0.362 5.362 10 C 0.401 3.599 11 O -0.452 6.452 12 N -0.323 5.323 13 C 0.013 3.987 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.183 1.183 23 C 0.311 3.689 24 O -0.358 6.358 25 C -0.069 4.069 26 C -0.173 4.173 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.301 0.699 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.074 0.926 41 H 0.174 0.826 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.002 -24.665 -8.948 26.710 hybrid contribution -0.078 1.159 0.500 1.265 sum -5.080 -23.505 -8.448 25.489 Atomic orbital electron populations 1.23360 0.76505 1.05683 1.02221 1.86056 1.23386 1.26520 1.88333 1.19322 0.92982 0.84428 0.95189 1.21361 1.01199 0.91425 1.08500 1.21154 0.94054 0.98566 0.96009 1.19220 0.93781 0.92118 1.08772 1.20069 0.82768 0.92808 0.95123 1.22070 1.05051 1.02704 0.90002 1.45462 1.17612 1.45767 1.27374 1.16027 0.81830 0.79413 0.82636 1.90971 1.41438 1.68393 1.44418 1.46681 1.15870 1.40735 1.28979 1.21768 1.01043 0.86995 0.88922 1.19167 0.94932 0.90975 0.96154 1.21461 1.40370 0.92372 1.04175 0.91117 1.26035 0.94651 1.00918 0.98119 1.70110 1.43206 1.16421 1.27394 0.85319 0.79100 0.77466 0.78405 1.19678 1.20583 1.18255 1.21286 0.85810 0.81295 0.80516 1.90704 1.16922 1.58043 1.70102 1.20858 1.00895 0.89668 0.95479 1.20649 0.91401 0.99142 1.06068 0.86071 0.92144 0.91589 0.83615 0.85389 0.89378 0.92101 0.86638 0.69869 0.89128 0.89544 0.99168 0.98943 0.92553 0.82638 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.51 10.50 -92.39 -0.97 -6.48 16 3 C 0.13 2.32 6.69 22.51 0.15 2.47 16 4 C -0.21 -3.93 9.04 22.37 0.20 -3.72 16 5 C -0.08 -1.80 9.17 22.25 0.20 -1.59 16 6 C -0.14 -2.89 4.87 -19.85 -0.10 -2.99 16 7 C 0.18 4.44 1.16 2.24 0.00 4.45 16 8 C -0.14 -2.74 8.97 71.98 0.65 -2.09 16 9 N -0.70 -16.89 5.29 -443.26 -2.34 -19.23 16 10 C 0.70 25.48 8.62 179.44 1.55 27.03 16 11 O -0.58 -25.23 17.48 -3.81 -0.07 -25.30 16 12 N -0.58 -22.69 2.60 -773.12 -2.01 -24.70 16 13 C 0.13 6.01 5.64 86.38 0.49 6.50 16 14 C 0.03 1.43 5.30 29.85 0.16 1.59 16 15 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 16 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 17 C 0.00 0.07 5.46 84.66 0.46 0.53 16 18 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 19 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.52 18.18 6.53 87.94 0.57 18.75 16 24 O -0.49 -18.84 15.67 -2.89 -0.05 -18.88 16 25 C -0.05 -0.82 9.34 22.25 0.21 -0.61 16 26 C -0.15 -2.50 9.99 22.37 0.22 -2.28 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.56 7.67 -2.39 -0.02 0.54 16 29 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 30 H 0.15 2.20 6.30 -2.91 -0.02 2.18 16 31 H 0.13 3.34 5.78 -2.91 -0.02 3.32 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.45 7.38 8.09 -92.71 -0.75 6.63 16 36 H 0.09 3.90 8.00 -2.39 -0.02 3.88 16 37 H 0.09 3.85 7.86 -2.39 -0.02 3.83 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 41 H 0.16 1.59 6.94 -2.91 -0.02 1.57 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -78.17 356.65 3.29 -74.88 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.31 Total: 12.84 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.11 Total: 17.69 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.07 Total: -101.71 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.08 Total: -50.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.17 3.29 -74.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.636 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds