Wall clock time and date at job start Tue Mar 31 2020 13:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99552 * 2 1 4 4 C 1.38736 * 120.05014 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94182 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05528 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94329 * 180.02562 * 6 5 4 8 8 C 1.53002 * 110.65470 * 272.90897 * 7 6 5 9 9 N 1.47315 * 110.59977 * 35.81862 * 7 6 5 10 10 C 1.34529 * 106.61887 * 118.53219 * 9 7 6 11 11 O 1.21532 * 123.77107 * 180.02562 * 10 9 7 12 12 N 1.33791 * 112.45727 * 359.97438 * 10 9 7 13 13 C 1.46504 * 124.17870 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46894 * 269.95925 * 13 12 10 15 15 C 1.50704 * 109.46591 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00631 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99820 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99597 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47170 * 90.00318 * 19 17 15 21 21 H 1.48500 * 109.46996 * 209.99865 * 19 17 15 22 22 H 1.48492 * 109.47343 * 330.00140 * 19 17 15 23 23 C 1.34774 * 111.64532 * 0.02562 * 12 10 9 24 24 O 1.21228 * 127.15742 * 179.74021 * 23 12 10 25 25 C 1.38263 * 120.11228 * 0.26458 * 6 5 4 26 26 C 1.38142 * 120.05714 * 359.46139 * 25 6 5 27 27 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47262 * 300.00058 * 1 2 3 29 29 H 1.09005 * 109.47081 * 60.00004 * 1 2 3 30 30 H 1.07999 * 120.03000 * 359.94781 * 4 3 2 31 31 H 1.08005 * 119.97263 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46909 * 297.78902 * 8 7 6 33 33 H 1.09005 * 109.47335 * 57.78664 * 8 7 6 34 34 H 1.08998 * 109.47460 * 177.78559 * 8 7 6 35 35 H 0.96994 * 126.69054 * 298.49317 * 9 7 6 36 36 H 1.08997 * 109.47108 * 29.96080 * 13 12 10 37 37 H 1.09000 * 109.46956 * 149.96106 * 13 12 10 38 38 H 1.08999 * 109.47491 * 299.99464 * 14 13 12 39 39 H 1.09000 * 109.47171 * 60.00313 * 14 13 12 40 40 H 0.97009 * 119.99532 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.97027 * 179.71001 * 25 6 5 42 42 H 1.07998 * 120.03349 * 180.27039 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0017 8 6 4.2974 5.4668 1.4276 9 7 5.2167 4.9725 -0.8101 10 6 5.0518 5.8544 -1.8125 11 8 5.8865 6.0664 -2.6700 12 7 3.8657 6.4714 -1.7605 13 6 3.4193 7.4792 -2.7255 14 6 3.8391 8.8689 -2.2425 15 6 3.3804 9.9055 -3.2355 16 1 2.8428 9.6035 -4.1221 17 6 3.6461 11.2399 -3.0115 18 7 4.3004 11.6077 -1.9316 19 14 3.0769 12.5249 -4.2420 20 1 1.7149 12.9907 -3.8770 21 1 4.0148 13.6761 -4.2251 22 1 3.0485 11.9295 -5.6021 23 6 3.1324 6.0511 -0.7108 24 8 2.0228 6.4248 -0.3962 25 6 1.9211 3.6048 0.0061 26 6 1.2915 2.3752 0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3800 -0.0001 31 1 5.1345 2.5751 -0.0019 32 1 3.3666 5.5822 1.9831 33 1 4.9213 4.7179 1.9156 34 1 4.8261 6.4197 1.4026 35 1 5.9944 4.4154 -0.6504 36 1 3.8733 7.2793 -3.6960 37 1 2.3338 7.4389 -2.8170 38 1 3.3850 9.0689 -1.2720 39 1 4.9245 8.9092 -2.1510 40 1 4.4870 12.5465 -1.7739 41 1 1.3342 4.5114 0.0112 42 1 0.2129 2.3202 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057850033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:01 Heat of formation + Delta-G solvation = -53.909935 kcal Electronic energy + Delta-G solvation = -26672.235230 eV Core-core repulsion = 22811.718794 eV Total energy + Delta-G solvation = -3860.516436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40107 -40.32197 -38.46999 -37.85951 -35.97343 -35.19317 -33.05826 -31.63608 -31.16555 -29.88220 -29.35778 -27.56278 -25.67528 -24.39212 -23.14266 -22.75829 -21.93579 -20.80548 -19.74223 -18.54699 -17.73861 -16.98547 -16.67723 -16.43618 -16.07097 -15.95035 -15.27804 -15.10994 -14.82233 -14.60714 -14.35515 -14.06152 -13.92646 -13.85392 -13.27539 -12.96786 -12.91828 -12.78394 -12.56866 -12.35331 -12.31792 -11.85277 -11.57274 -11.31622 -11.17216 -10.96684 -10.85815 -10.46708 -10.16016 -10.07947 -9.77023 -9.47478 -9.26582 -9.25211 -8.89566 -8.43212 -8.39133 -6.04083 -4.07769 1.02541 1.09774 1.86631 2.56130 2.93906 3.19188 3.32403 3.37713 3.38423 3.42340 3.53756 4.01808 4.26497 4.44630 4.55182 4.60241 4.76101 4.80739 4.81892 5.07962 5.13139 5.18894 5.32599 5.34042 5.36271 5.45014 5.55052 5.78136 5.86350 5.96186 6.01068 6.11202 6.12516 6.28647 6.31492 6.42186 6.64582 6.90170 7.06029 7.35911 7.56789 7.66548 7.71176 7.92801 8.27619 8.44399 8.97231 9.56228 11.07645 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.003022 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.501617 B = 9264.672640 C = 9751.285245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.152 4.152 5 C -0.058 4.058 6 C -0.125 4.125 7 C 0.167 3.833 8 C -0.142 4.142 9 N -0.726 5.726 10 C 0.704 3.296 11 O -0.536 6.536 12 N -0.565 5.565 13 C 0.119 3.881 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.533 3.467 24 O -0.465 6.465 25 C -0.066 4.066 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.434 0.566 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.146 0.854 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -23.388 8.444 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.085 3.915 4 C -0.171 4.171 5 C -0.076 4.076 6 C -0.127 4.127 7 C 0.076 3.924 8 C -0.200 4.200 9 N -0.391 5.391 10 C 0.405 3.595 11 O -0.409 6.409 12 N -0.309 5.309 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C 0.319 3.681 24 O -0.335 6.335 25 C -0.085 4.085 26 C -0.222 4.222 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.278 0.722 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.164 0.836 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.107 -22.992 8.130 24.730 hybrid contribution -0.151 0.682 -0.499 0.858 sum -4.258 -22.310 7.631 23.960 Atomic orbital electron populations 1.23087 0.78192 1.03990 1.01647 1.86063 1.21576 1.26929 1.88576 1.19119 0.92439 0.84190 0.95704 1.20346 0.91357 0.98411 1.06943 1.20619 0.99684 0.90549 0.96734 1.19325 0.93838 0.92642 1.06893 1.20071 0.84937 0.93056 0.94344 1.22001 1.03831 1.02738 0.91475 1.45642 1.19146 1.45128 1.29177 1.15906 0.82303 0.79099 0.82235 1.91003 1.44544 1.67195 1.38131 1.46698 1.16597 1.39273 1.28375 1.22236 0.99902 0.87805 0.90076 1.19411 0.97632 0.88108 0.97373 1.20995 1.36883 0.91201 1.06975 0.92223 1.24997 0.94980 0.98683 0.95566 1.69974 1.40130 1.16747 1.26195 0.86502 0.78462 0.80984 0.81529 1.20564 1.21155 1.19711 1.20470 0.85867 0.81244 0.80512 1.90721 1.17079 1.58576 1.67106 1.21271 0.93841 0.98624 0.94734 1.21236 1.00287 0.91908 1.08750 0.88202 0.92456 0.92443 0.84880 0.85268 0.89783 0.90418 0.90592 0.72222 0.89615 0.89861 0.96021 0.95730 0.92846 0.83618 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.02 10.50 -19.43 -0.20 -3.22 16 3 C 0.13 1.34 6.69 -39.21 -0.26 1.08 16 4 C -0.15 -1.45 9.99 -39.43 -0.39 -1.84 16 5 C -0.06 -0.54 9.34 -39.61 -0.37 -0.91 16 6 C -0.13 -1.43 4.89 -104.60 -0.51 -1.94 16 7 C 0.17 2.12 1.16 -133.25 -0.15 1.97 16 8 C -0.14 -1.50 8.97 37.16 0.33 -1.17 16 9 N -0.73 -9.32 5.36 -54.02 -0.29 -9.61 16 10 C 0.70 12.72 8.62 -88.02 -0.76 11.96 16 11 O -0.54 -11.53 17.48 5.34 0.09 -11.44 16 12 N -0.57 -10.78 2.60 -120.73 -0.31 -11.09 16 13 C 0.12 2.58 5.64 -4.04 -0.02 2.55 16 14 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.53 9.09 6.46 -10.55 -0.07 9.02 16 24 O -0.46 -8.70 15.63 5.60 0.09 -8.61 16 25 C -0.07 -0.78 9.17 -39.61 -0.36 -1.15 16 26 C -0.20 -2.09 9.04 -39.43 -0.36 -2.44 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 0.90 7.11 -52.48 -0.37 0.53 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.43 4.11 8.18 -40.82 -0.33 3.78 16 36 H 0.09 1.85 7.86 -51.93 -0.41 1.44 16 37 H 0.08 1.73 8.01 -51.93 -0.42 1.32 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.15 1.90 5.62 -52.49 -0.30 1.60 16 42 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -34.83 356.72 -7.48 -42.31 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.45 Total: 0.93 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.50 Total: 4.90 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.13 Total: -47.04 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.02 Total: -23.27 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.83 -7.48 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.598 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds