Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99552 * 2 1 4 4 C 1.38736 * 120.05014 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94182 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05528 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94329 * 180.02562 * 6 5 4 8 8 C 1.53002 * 110.65470 * 272.90897 * 7 6 5 9 9 N 1.47315 * 110.59977 * 35.81862 * 7 6 5 10 10 C 1.34529 * 106.61887 * 118.53219 * 9 7 6 11 11 O 1.21532 * 123.77107 * 180.02562 * 10 9 7 12 12 N 1.33791 * 112.45727 * 359.97438 * 10 9 7 13 13 C 1.46504 * 124.17870 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46894 * 269.95925 * 13 12 10 15 15 C 1.50704 * 109.46591 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00631 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99820 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99597 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47170 * 90.00318 * 19 17 15 21 21 H 1.48500 * 109.46996 * 209.99865 * 19 17 15 22 22 H 1.48492 * 109.47343 * 330.00140 * 19 17 15 23 23 C 1.34774 * 111.64532 * 0.02562 * 12 10 9 24 24 O 1.21228 * 127.15742 * 179.74021 * 23 12 10 25 25 C 1.38263 * 120.11228 * 0.26458 * 6 5 4 26 26 C 1.38142 * 120.05714 * 359.46139 * 25 6 5 27 27 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47262 * 300.00058 * 1 2 3 29 29 H 1.09005 * 109.47081 * 60.00004 * 1 2 3 30 30 H 1.07999 * 120.03000 * 359.94781 * 4 3 2 31 31 H 1.08005 * 119.97263 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46909 * 297.78902 * 8 7 6 33 33 H 1.09005 * 109.47335 * 57.78664 * 8 7 6 34 34 H 1.08998 * 109.47460 * 177.78559 * 8 7 6 35 35 H 0.96994 * 126.69054 * 298.49317 * 9 7 6 36 36 H 1.08997 * 109.47108 * 29.96080 * 13 12 10 37 37 H 1.09000 * 109.46956 * 149.96106 * 13 12 10 38 38 H 1.08999 * 109.47491 * 299.99464 * 14 13 12 39 39 H 1.09000 * 109.47171 * 60.00313 * 14 13 12 40 40 H 0.97009 * 119.99532 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.97027 * 179.71001 * 25 6 5 42 42 H 1.07998 * 120.03349 * 180.27039 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0017 8 6 4.2974 5.4668 1.4276 9 7 5.2167 4.9725 -0.8101 10 6 5.0518 5.8544 -1.8125 11 8 5.8865 6.0664 -2.6700 12 7 3.8657 6.4714 -1.7605 13 6 3.4193 7.4792 -2.7255 14 6 3.8391 8.8689 -2.2425 15 6 3.3804 9.9055 -3.2355 16 1 2.8428 9.6035 -4.1221 17 6 3.6461 11.2399 -3.0115 18 7 4.3004 11.6077 -1.9316 19 14 3.0769 12.5249 -4.2420 20 1 1.7149 12.9907 -3.8770 21 1 4.0148 13.6761 -4.2251 22 1 3.0485 11.9295 -5.6021 23 6 3.1324 6.0511 -0.7108 24 8 2.0228 6.4248 -0.3962 25 6 1.9211 3.6048 0.0061 26 6 1.2915 2.3752 0.0009 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3800 -0.0001 31 1 5.1345 2.5751 -0.0019 32 1 3.3666 5.5822 1.9831 33 1 4.9213 4.7179 1.9156 34 1 4.8261 6.4197 1.4026 35 1 5.9944 4.4154 -0.6504 36 1 3.8733 7.2793 -3.6960 37 1 2.3338 7.4389 -2.8170 38 1 3.3850 9.0689 -1.2720 39 1 4.9245 8.9092 -2.1510 40 1 4.4870 12.5465 -1.7739 41 1 1.3342 4.5114 0.0112 42 1 0.2129 2.3202 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057850033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = -77.592287 kcal Electronic energy + Delta-G solvation = -26673.262173 eV Core-core repulsion = 22811.718794 eV Total energy + Delta-G solvation = -3861.543380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.72914 -41.09367 -39.82594 -38.82735 -37.27183 -36.76497 -35.06090 -32.69447 -32.19753 -31.59334 -30.15067 -28.15754 -27.51594 -25.69551 -24.27810 -23.91495 -23.45004 -21.92297 -21.19027 -19.38449 -19.03477 -18.63274 -18.10374 -17.58054 -17.27090 -16.66045 -16.59186 -16.47591 -16.32334 -16.13711 -15.55497 -15.21429 -14.94265 -14.90413 -14.67233 -14.38966 -14.17493 -13.76978 -13.64550 -13.55209 -13.42490 -12.95312 -12.88722 -12.75235 -12.67311 -12.15880 -12.10358 -12.04238 -11.99734 -11.80399 -11.44406 -11.10958 -10.79067 -10.62490 -10.52566 -10.03509 -9.21568 -8.26162 -6.39159 0.21108 0.31538 0.51488 1.17765 1.40354 1.42346 1.53716 1.92464 2.06852 2.33719 2.39193 2.68440 2.79701 3.08148 3.29210 3.75128 3.82656 3.90308 3.97430 4.26826 4.35128 4.38999 4.39365 4.41212 4.47129 4.50878 4.58882 4.62942 4.68886 4.73157 4.75151 5.02344 5.05795 5.17530 5.31469 5.34080 5.38757 5.46665 5.66573 5.70509 5.76976 6.05591 6.07014 6.31343 6.37816 6.74575 7.06985 7.30566 8.86748 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.003022 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.501617 B = 9264.672640 C = 9751.285245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.126 3.874 4 C -0.154 4.154 5 C -0.050 4.050 6 C -0.137 4.137 7 C 0.183 3.817 8 C -0.141 4.141 9 N -0.695 5.695 10 C 0.700 3.300 11 O -0.576 6.576 12 N -0.578 5.578 13 C 0.133 3.867 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.974 3.026 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.260 1.260 23 C 0.523 3.477 24 O -0.487 6.487 25 C -0.082 4.082 26 C -0.206 4.206 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.453 0.547 36 H 0.086 0.914 37 H 0.091 0.909 38 H -0.008 1.008 39 H -0.010 1.010 40 H 0.266 0.734 41 H 0.127 0.873 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -25.328 8.582 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.081 3.919 4 C -0.172 4.172 5 C -0.068 4.068 6 C -0.138 4.138 7 C 0.092 3.908 8 C -0.199 4.199 9 N -0.362 5.362 10 C 0.401 3.599 11 O -0.452 6.452 12 N -0.323 5.323 13 C 0.013 3.987 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.089 0.911 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.184 1.184 23 C 0.311 3.689 24 O -0.358 6.358 25 C -0.100 4.100 26 C -0.225 4.225 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.301 0.699 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.328 -24.996 8.315 26.696 hybrid contribution -0.155 1.188 -0.472 1.287 sum -4.482 -23.808 7.843 25.465 Atomic orbital electron populations 1.23358 0.76525 1.05685 1.02201 1.86057 1.23368 1.26507 1.88334 1.19326 0.93015 0.84394 0.95190 1.20659 0.91356 0.99181 1.06002 1.20863 1.00948 0.89583 0.95394 1.19206 0.93735 0.92153 1.08732 1.20071 0.83583 0.92581 0.94532 1.22079 1.04593 1.03208 0.89998 1.45465 1.19854 1.43599 1.27253 1.16030 0.81483 0.79627 0.82791 1.90971 1.45559 1.68707 1.40002 1.46686 1.17654 1.39125 1.28791 1.21767 1.00219 0.86144 0.90601 1.19166 0.94998 0.91111 0.95953 1.21462 1.37121 0.92128 1.07671 0.91115 1.26039 0.94822 1.01241 0.97632 1.70115 1.41264 1.17486 1.28261 0.85316 0.78192 0.77685 0.79084 1.19474 1.20664 1.18381 1.21288 0.85896 0.81721 0.80008 1.90700 1.18164 1.59483 1.67443 1.21188 0.94155 0.98583 0.96117 1.21353 1.01181 0.91449 1.08524 0.86050 0.91637 0.92149 0.82857 0.82450 0.89510 0.86562 0.92005 0.69881 0.89556 0.89104 0.98953 0.99160 0.92555 0.85498 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.50 10.50 -92.43 -0.97 -6.47 16 3 C 0.13 2.32 6.69 22.51 0.15 2.47 16 4 C -0.15 -2.46 9.99 22.37 0.22 -2.24 16 5 C -0.05 -0.78 9.34 22.25 0.21 -0.58 16 6 C -0.14 -2.88 4.89 -19.85 -0.10 -2.98 16 7 C 0.18 4.44 1.16 2.24 0.00 4.45 16 8 C -0.14 -2.75 8.97 71.98 0.65 -2.10 16 9 N -0.70 -16.89 5.36 -443.26 -2.38 -19.27 16 10 C 0.70 25.50 8.62 179.44 1.55 27.05 16 11 O -0.58 -25.27 17.48 -3.82 -0.07 -25.34 16 12 N -0.58 -22.69 2.60 -773.13 -2.01 -24.71 16 13 C 0.13 6.01 5.64 86.38 0.49 6.49 16 14 C 0.03 1.43 5.30 29.85 0.16 1.59 16 15 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 16 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 19 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 23 C 0.52 18.18 6.46 87.94 0.57 18.75 16 24 O -0.49 -18.86 15.63 -2.87 -0.04 -18.91 16 25 C -0.08 -1.88 9.17 22.25 0.20 -1.68 16 26 C -0.21 -3.97 9.04 22.36 0.20 -3.77 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.06 0.56 7.66 -2.38 -0.02 0.54 16 30 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.16 1.51 7.11 -2.91 -0.02 1.49 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.45 7.38 8.18 -92.71 -0.76 6.62 16 36 H 0.09 3.85 7.86 -2.39 -0.02 3.83 16 37 H 0.09 3.91 8.01 -2.39 -0.02 3.89 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 41 H 0.13 3.38 5.62 -2.91 -0.02 3.37 16 42 H 0.15 2.23 6.30 -2.91 -0.02 2.22 16 Total: -1.00 -78.28 356.72 3.25 -75.04 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.30 Total: 12.82 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.11 Total: 17.65 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.11 Total: -101.75 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -1.08 Total: -50.72 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.28 3.25 -75.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057850033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.556 kcal (2) G-P(sol) polarization free energy of solvation -78.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds