Wall clock time and date at job start Tue Mar 31 2020 13:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 110.29009 * 2 1 4 4 O 1.20831 * 119.99879 * 240.68560 * 3 2 1 5 5 O 1.34225 * 120.00071 * 60.68379 * 3 2 1 6 6 C 1.54625 * 110.41175 * 237.81094 * 2 1 3 7 7 C 1.54599 * 102.90966 * 262.75854 * 6 2 1 8 8 N 1.48117 * 103.42158 * 322.86934 * 7 6 2 9 9 C 1.34781 * 127.03009 * 219.28488 * 8 7 6 10 10 O 1.21582 * 119.99872 * 179.68644 * 9 8 7 11 11 N 1.34781 * 119.99856 * 359.68201 * 9 8 7 12 12 C 1.39237 * 119.99648 * 184.40171 * 11 9 8 13 13 C 1.39479 * 119.83833 * 324.34712 * 12 11 9 14 14 C 1.36372 * 120.17082 * 179.71794 * 13 12 11 15 15 C 1.40867 * 119.82710 * 0.52915 * 14 13 12 16 16 C 1.41162 * 120.16510 * 179.76363 * 15 14 13 17 17 H 1.08001 * 119.99842 * 148.74310 * 16 15 14 18 18 C 1.39892 * 119.99986 * 328.75145 * 16 15 14 19 19 N 1.30877 * 119.99930 * 167.76190 * 18 16 15 20 20 Si 1.86803 * 119.99813 * 347.75605 * 18 16 15 21 21 H 1.48501 * 109.47001 * 92.60086 * 20 18 16 22 22 H 1.48503 * 109.47088 * 212.59977 * 20 18 16 23 23 H 1.48495 * 109.47214 * 332.60030 * 20 18 16 24 24 C 1.40866 * 119.67497 * 359.74433 * 15 14 13 25 25 C 1.36372 * 119.82476 * 359.97438 * 24 15 14 26 26 C 1.47483 * 105.93445 * 39.02533 * 8 7 6 27 27 H 1.09000 * 109.47039 * 299.31289 * 1 2 3 28 28 H 1.08988 * 109.47638 * 59.31708 * 1 2 3 29 29 H 1.09007 * 109.47012 * 179.32152 * 1 2 3 30 30 H 0.96701 * 117.00004 * 179.97438 * 5 3 2 31 31 H 1.08994 * 110.73779 * 21.24642 * 6 2 1 32 32 H 1.08995 * 110.73900 * 144.57274 * 6 2 1 33 33 H 1.08997 * 110.61650 * 204.35379 * 7 6 2 34 34 H 1.09004 * 110.54407 * 81.34488 * 7 6 2 35 35 H 0.96998 * 119.99783 * 4.68562 * 11 9 8 36 36 H 1.08002 * 119.91156 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.08571 * 180.25268 * 14 13 12 38 38 H 0.97006 * 119.99499 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.08989 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.91731 * 180.02562 * 25 24 15 41 41 H 1.09001 * 109.91280 * 94.14011 * 26 8 7 42 42 H 1.09002 * 109.91082 * 215.41828 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 8 2.7426 1.8025 -0.9124 5 8 1.7515 2.2404 1.0135 6 6 2.0693 -0.7720 -1.2264 7 6 2.3678 -2.1743 -0.6480 8 7 2.8825 -1.8835 0.7101 9 6 3.8948 -2.5069 1.3451 10 8 4.2169 -2.1580 2.4644 11 7 4.5499 -3.5171 0.7394 12 6 5.5337 -4.2212 1.4288 13 6 6.3604 -3.5539 2.3324 14 6 7.3223 -4.2379 3.0155 15 6 7.4871 -5.6200 2.7982 16 6 8.4837 -6.3341 3.4977 17 1 8.3284 -7.3732 3.7480 18 6 9.6726 -5.6959 3.8669 19 7 10.4885 -6.2710 4.7133 20 14 10.0955 -4.0228 3.1517 21 1 9.5978 -2.9569 4.0580 22 1 11.5689 -3.9034 3.0093 23 1 9.4561 -3.8781 1.8193 24 6 6.6521 -6.2860 1.8797 25 6 5.6908 -5.5896 1.2084 26 6 2.0650 -0.7682 1.2228 27 1 -0.3633 0.5031 0.8961 28 1 -0.3634 0.5243 -0.8837 29 1 -0.3633 -1.0277 -0.0122 30 1 2.1099 3.1374 0.9696 31 1 1.3135 -0.8286 -2.0097 32 1 2.9823 -0.3103 -1.6022 33 1 3.1244 -2.6828 -1.2454 34 1 1.4553 -2.7681 -0.5944 35 1 4.3390 -3.7508 -0.1780 36 1 6.2357 -2.4934 2.4946 37 1 7.9589 -3.7206 3.7179 38 1 11.3131 -5.8285 4.9689 39 1 6.7729 -7.3453 1.7077 40 1 5.0496 -6.0988 0.5041 41 1 1.2332 -1.1570 1.8101 42 1 2.6795 -0.1087 1.8358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062935356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:47 Heat of formation + Delta-G solvation = -86.240401 kcal Electronic energy + Delta-G solvation = -26299.337233 eV Core-core repulsion = 22437.418843 eV Total energy + Delta-G solvation = -3861.918390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28266 -40.02949 -38.40492 -37.22716 -36.44889 -34.51099 -33.48690 -32.81222 -30.00063 -29.89753 -29.50608 -27.04553 -25.30265 -24.09884 -23.38002 -21.79148 -21.01839 -20.11370 -19.46425 -18.32676 -18.20735 -17.40192 -16.95769 -16.72398 -16.18959 -15.65070 -15.43605 -14.96733 -14.46096 -14.13237 -13.86835 -13.71444 -13.48722 -13.36248 -13.01272 -12.78513 -12.61970 -12.52276 -12.39112 -12.24093 -12.05069 -11.89536 -11.88125 -11.49782 -11.22304 -11.11271 -10.80618 -10.77482 -10.31368 -10.20018 -9.72832 -9.57906 -9.38899 -8.88867 -8.76954 -7.75951 -7.13336 -6.88430 -4.40593 1.80135 2.42585 2.52508 2.72447 2.76065 3.16870 3.25968 3.35520 3.49714 3.80973 4.01749 4.03375 4.28019 4.36418 4.56425 4.71247 4.77734 4.92206 5.09774 5.19654 5.26009 5.36612 5.42188 5.45065 5.54068 5.61984 5.73520 5.92251 6.00172 6.13030 6.18211 6.45284 6.69345 6.77819 6.92013 7.01096 7.20582 7.45988 7.50719 7.60357 7.67502 7.91289 8.11128 8.25541 8.38208 8.64846 8.82791 8.92707 10.13661 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.002910 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.394169 B = 9618.512354 C =10242.838906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.493 3.507 4 O -0.509 6.509 5 O -0.511 6.511 6 C -0.121 4.121 7 C 0.101 3.899 8 N -0.645 5.645 9 C 0.718 3.282 10 O -0.571 6.571 11 N -0.663 5.663 12 C 0.010 3.990 13 C -0.062 4.062 14 C -0.227 4.227 15 C 0.087 3.913 16 C -0.443 4.443 17 H 0.091 0.909 18 C 0.081 3.919 19 N -0.815 5.815 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.244 1.244 24 C -0.196 4.196 25 C -0.095 4.095 26 C 0.141 3.859 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.412 0.588 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.392 0.608 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.285 0.715 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.173 12.444 -12.135 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C 0.335 3.665 4 O -0.397 6.397 5 O -0.323 6.323 6 C -0.159 4.159 7 C -0.022 4.022 8 N -0.385 5.385 9 C 0.421 3.579 10 O -0.448 6.448 11 N -0.309 5.309 12 C -0.082 4.082 13 C -0.083 4.083 14 C -0.247 4.247 15 C 0.084 3.916 16 C -0.471 4.471 17 H 0.109 0.891 18 C -0.137 4.137 19 N -0.439 5.439 20 Si 0.742 3.258 21 H -0.197 1.197 22 H -0.222 1.222 23 H -0.167 1.167 24 C -0.216 4.216 25 C -0.115 4.115 26 C 0.017 3.983 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.583 12.281 -11.294 24.974 hybrid contribution 0.409 1.246 -0.684 1.479 sum -18.174 13.527 -11.978 25.627 Atomic orbital electron populations 1.21881 0.90140 1.03870 1.03444 1.21447 0.98414 0.88241 0.98933 1.23100 0.76727 0.87983 0.78715 1.90725 1.35750 1.76762 1.36437 1.84521 1.72121 1.28092 1.47537 1.22824 1.03333 0.94433 0.95302 1.22440 0.99712 0.96622 0.83467 1.47850 1.35329 1.37461 1.17878 1.15426 0.78375 0.80353 0.83722 1.90935 1.68115 1.67240 1.18480 1.42029 1.38849 1.34611 1.15457 1.16916 0.95593 0.90458 1.05261 1.20470 0.93187 0.98964 0.95632 1.20713 1.02706 0.95727 1.05540 1.17806 0.92486 0.91498 0.89844 1.19462 0.98977 0.99771 1.28922 0.89119 1.26160 0.95917 0.99366 0.92224 1.69681 1.10548 1.39334 1.24378 0.86288 0.75988 0.81153 0.82366 1.19677 1.22167 1.16681 1.20574 1.01210 0.98939 1.00866 1.20134 0.99061 0.91496 1.00828 1.21750 0.95102 0.87960 0.93461 0.90693 0.91535 0.90355 0.72899 0.88873 0.88741 0.89910 0.90497 0.77371 0.87015 0.88007 0.90500 0.87709 0.88563 0.90020 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.17 37.16 0.30 -0.40 16 2 C -0.07 -0.55 0.91 -154.28 -0.14 -0.69 16 3 C 0.49 4.77 6.75 36.01 0.24 5.02 16 4 O -0.51 -6.44 16.20 -18.75 -0.30 -6.74 16 5 O -0.51 -3.80 13.30 -39.24 -0.52 -4.32 16 6 C -0.12 -0.92 5.95 -25.04 -0.15 -1.06 16 7 C 0.10 0.83 6.95 -2.31 -0.02 0.81 16 8 N -0.64 -8.21 3.29 -175.69 -0.58 -8.79 16 9 C 0.72 12.73 8.37 -86.91 -0.73 12.01 16 10 O -0.57 -12.66 14.12 5.29 0.07 -12.58 16 11 N -0.66 -11.35 5.27 -14.10 -0.07 -11.42 16 12 C 0.01 0.22 6.30 -83.57 -0.53 -0.31 16 13 C -0.06 -1.50 8.61 -39.79 -0.34 -1.85 16 14 C -0.23 -5.81 6.93 -39.26 -0.27 -6.08 16 15 C 0.09 2.25 5.13 -106.80 -0.55 1.70 16 16 C -0.44 -12.16 9.59 -37.85 -0.36 -12.53 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.08 2.19 5.47 -17.34 -0.09 2.09 16 19 N -0.81 -22.22 13.93 55.54 0.77 -21.45 16 20 Si 0.91 21.70 24.40 -169.99 -4.15 17.55 16 21 H -0.27 -6.35 6.67 56.52 0.38 -5.98 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.24 -5.88 6.67 56.52 0.38 -5.50 16 24 C -0.20 -4.51 9.74 -39.26 -0.38 -4.90 16 25 C -0.09 -1.95 9.90 -39.79 -0.39 -2.34 16 26 C 0.14 1.52 6.26 -2.98 -0.02 1.50 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.29 8.14 -51.94 -0.42 -0.13 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.41 1.46 9.10 45.56 0.41 1.87 16 31 H 0.09 0.47 7.86 -51.93 -0.41 0.07 16 32 H 0.09 0.93 6.92 -51.93 -0.36 0.57 16 33 H 0.08 0.61 6.78 -51.93 -0.35 0.26 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.39 5.18 7.14 -40.82 -0.29 4.88 16 36 H 0.11 2.73 6.24 -52.49 -0.33 2.40 16 37 H 0.10 2.63 4.40 -52.49 -0.23 2.40 16 38 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 42 H 0.08 1.06 7.54 -51.93 -0.39 0.67 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -34.68 344.68 -7.50 -42.18 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.49 Total: 7.41 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -3.43 Total: -7.03 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.12 Total: -41.66 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.75 Total: -23.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.68 -7.50 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062935356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.065 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds