Wall clock time and date at job start Tue Mar 31 2020 13:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 110.29009 * 2 1 4 4 O 1.20831 * 119.99879 * 240.68560 * 3 2 1 5 5 O 1.34225 * 120.00071 * 60.68379 * 3 2 1 6 6 C 1.54625 * 110.41175 * 237.81094 * 2 1 3 7 7 C 1.54599 * 102.90966 * 262.75854 * 6 2 1 8 8 N 1.48117 * 103.42158 * 322.86934 * 7 6 2 9 9 C 1.34781 * 127.03009 * 219.28488 * 8 7 6 10 10 O 1.21582 * 119.99872 * 179.68644 * 9 8 7 11 11 N 1.34781 * 119.99856 * 359.68201 * 9 8 7 12 12 C 1.39237 * 119.99648 * 184.40171 * 11 9 8 13 13 C 1.39479 * 119.83833 * 324.34712 * 12 11 9 14 14 C 1.36372 * 120.17082 * 179.71794 * 13 12 11 15 15 C 1.40867 * 119.82710 * 0.52915 * 14 13 12 16 16 C 1.41162 * 120.16510 * 179.76363 * 15 14 13 17 17 H 1.08001 * 119.99842 * 148.74310 * 16 15 14 18 18 C 1.39892 * 119.99986 * 328.75145 * 16 15 14 19 19 N 1.30877 * 119.99930 * 167.76190 * 18 16 15 20 20 Si 1.86803 * 119.99813 * 347.75605 * 18 16 15 21 21 H 1.48501 * 109.47001 * 92.60086 * 20 18 16 22 22 H 1.48503 * 109.47088 * 212.59977 * 20 18 16 23 23 H 1.48495 * 109.47214 * 332.60030 * 20 18 16 24 24 C 1.40866 * 119.67497 * 359.74433 * 15 14 13 25 25 C 1.36372 * 119.82476 * 359.97438 * 24 15 14 26 26 C 1.47483 * 105.93445 * 39.02533 * 8 7 6 27 27 H 1.09000 * 109.47039 * 299.31289 * 1 2 3 28 28 H 1.08988 * 109.47638 * 59.31708 * 1 2 3 29 29 H 1.09007 * 109.47012 * 179.32152 * 1 2 3 30 30 H 0.96701 * 117.00004 * 179.97438 * 5 3 2 31 31 H 1.08994 * 110.73779 * 21.24642 * 6 2 1 32 32 H 1.08995 * 110.73900 * 144.57274 * 6 2 1 33 33 H 1.08997 * 110.61650 * 204.35379 * 7 6 2 34 34 H 1.09004 * 110.54407 * 81.34488 * 7 6 2 35 35 H 0.96998 * 119.99783 * 4.68562 * 11 9 8 36 36 H 1.08002 * 119.91156 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.08571 * 180.25268 * 14 13 12 38 38 H 0.97006 * 119.99499 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.08989 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.91731 * 180.02562 * 25 24 15 41 41 H 1.09001 * 109.91280 * 94.14011 * 26 8 7 42 42 H 1.09002 * 109.91082 * 215.41828 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 8 2.7426 1.8025 -0.9124 5 8 1.7515 2.2404 1.0135 6 6 2.0693 -0.7720 -1.2264 7 6 2.3678 -2.1743 -0.6480 8 7 2.8825 -1.8835 0.7101 9 6 3.8948 -2.5069 1.3451 10 8 4.2169 -2.1580 2.4644 11 7 4.5499 -3.5171 0.7394 12 6 5.5337 -4.2212 1.4288 13 6 6.3604 -3.5539 2.3324 14 6 7.3223 -4.2379 3.0155 15 6 7.4871 -5.6200 2.7982 16 6 8.4837 -6.3341 3.4977 17 1 8.3284 -7.3732 3.7480 18 6 9.6726 -5.6959 3.8669 19 7 10.4885 -6.2710 4.7133 20 14 10.0955 -4.0228 3.1517 21 1 9.5978 -2.9569 4.0580 22 1 11.5689 -3.9034 3.0093 23 1 9.4561 -3.8781 1.8193 24 6 6.6521 -6.2860 1.8797 25 6 5.6908 -5.5896 1.2084 26 6 2.0650 -0.7682 1.2228 27 1 -0.3633 0.5031 0.8961 28 1 -0.3634 0.5243 -0.8837 29 1 -0.3633 -1.0277 -0.0122 30 1 2.1099 3.1374 0.9696 31 1 1.3135 -0.8286 -2.0097 32 1 2.9823 -0.3103 -1.6022 33 1 3.1244 -2.6828 -1.2454 34 1 1.4553 -2.7681 -0.5944 35 1 4.3390 -3.7508 -0.1780 36 1 6.2357 -2.4934 2.4946 37 1 7.9589 -3.7206 3.7179 38 1 11.3131 -5.8285 4.9689 39 1 6.7729 -7.3453 1.7077 40 1 5.0496 -6.0988 0.5041 41 1 1.2332 -1.1570 1.8101 42 1 2.6795 -0.1087 1.8358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062935356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:46 Heat of formation + Delta-G solvation = -111.110622 kcal Electronic energy + Delta-G solvation = -26300.415687 eV Core-core repulsion = 22437.418843 eV Total energy + Delta-G solvation = -3862.996844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.12885 -41.27323 -39.72591 -38.59064 -37.19674 -36.20635 -35.02015 -34.04020 -31.75175 -31.30277 -30.67221 -27.93056 -26.54905 -25.36129 -24.15257 -23.60902 -22.69592 -20.98633 -20.68832 -19.64704 -19.25264 -18.94233 -18.26469 -17.63003 -17.28135 -17.04596 -16.60374 -16.26301 -15.81218 -15.59983 -15.27149 -14.91989 -14.61314 -14.42735 -14.36982 -14.07891 -13.93602 -13.82387 -13.57870 -13.39233 -13.09633 -12.92274 -12.75101 -12.68918 -12.56503 -12.16538 -12.09688 -12.06692 -11.77483 -11.62093 -11.54351 -11.36139 -11.11061 -10.68548 -9.84855 -9.60366 -8.93311 -8.86355 -6.43668 0.64818 0.86360 1.04846 1.24961 1.34594 1.44922 1.48424 1.98578 2.08366 2.10643 2.63968 2.97315 3.20155 3.42446 3.49464 3.79264 4.09537 4.20090 4.22828 4.29628 4.35726 4.48290 4.57255 4.64958 4.69503 4.80611 4.88892 4.92594 4.94653 4.97683 5.06397 5.10615 5.19770 5.32187 5.33618 5.51768 5.52581 5.68811 5.86364 5.92925 6.05817 6.23036 6.39144 6.71059 6.84126 6.87861 6.93220 7.54045 8.19960 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.002910 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.394169 B = 9618.512354 C =10242.838906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C 0.491 3.509 4 O -0.545 6.545 5 O -0.509 6.509 6 C -0.116 4.116 7 C 0.096 3.904 8 N -0.641 5.641 9 C 0.713 3.287 10 O -0.624 6.624 11 N -0.654 5.654 12 C 0.039 3.961 13 C -0.084 4.084 14 C -0.239 4.239 15 C 0.064 3.936 16 C -0.476 4.476 17 H 0.064 0.936 18 C 0.047 3.953 19 N -0.855 5.855 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.251 1.251 24 C -0.195 4.195 25 C -0.085 4.085 26 C 0.136 3.864 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.427 0.573 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.292 0.708 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.099 0.901 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 13.036 -15.112 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C 0.334 3.666 4 O -0.435 6.435 5 O -0.322 6.322 6 C -0.154 4.154 7 C -0.025 4.025 8 N -0.379 5.379 9 C 0.416 3.584 10 O -0.504 6.504 11 N -0.303 5.303 12 C -0.055 4.055 13 C -0.104 4.104 14 C -0.259 4.259 15 C 0.061 3.939 16 C -0.506 4.506 17 H 0.082 0.918 18 C -0.166 4.166 19 N -0.482 5.482 20 Si 0.789 3.211 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.175 1.175 24 C -0.215 4.215 25 C -0.105 4.105 26 C 0.013 3.987 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.289 0.711 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.254 0.746 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.166 0.834 41 H 0.117 0.883 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.076 12.902 -14.329 29.311 hybrid contribution 1.157 1.202 0.122 1.672 sum -20.920 14.104 -14.207 28.955 Atomic orbital electron populations 1.21915 0.87331 1.05402 1.04159 1.21508 1.00387 0.86725 0.97745 1.23509 0.75911 0.88812 0.78320 1.90716 1.37326 1.77642 1.37840 1.84496 1.71837 1.29189 1.46670 1.22836 1.03274 0.93518 0.95750 1.22849 1.01310 0.97576 0.80769 1.47827 1.33721 1.36888 1.19489 1.15597 0.79132 0.80315 0.83393 1.90909 1.69806 1.68654 1.21026 1.41815 1.37879 1.34257 1.16371 1.17080 0.94458 0.91052 1.02951 1.20549 0.93913 0.98835 0.97144 1.20720 1.03319 0.95869 1.05954 1.17939 0.93187 0.91745 0.90984 1.19445 1.00553 0.98946 1.31666 0.91777 1.26706 0.95678 1.01820 0.92433 1.69705 1.11549 1.40886 1.26077 0.85537 0.76494 0.78008 0.81087 1.19973 1.20348 1.17495 1.20875 1.00766 0.99916 0.99938 1.20516 0.98487 0.90897 1.00627 1.21932 0.94760 0.87336 0.94696 0.90602 0.90281 0.88389 0.71080 0.85466 0.91235 0.88722 0.87074 0.74594 0.87863 0.89239 0.89758 0.86211 0.83439 0.88268 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.17 71.98 0.59 -0.21 16 2 C -0.06 -0.81 0.91 -52.04 -0.05 -0.86 16 3 C 0.49 8.77 6.75 71.24 0.48 9.25 16 4 O -0.55 -13.30 16.20 21.95 0.36 -12.94 16 5 O -0.51 -6.89 13.30 -51.37 -0.68 -7.57 16 6 C -0.12 -1.32 5.95 31.69 0.19 -1.13 16 7 C 0.10 1.13 6.95 86.61 0.60 1.74 16 8 N -0.64 -14.54 3.29 -828.03 -2.73 -17.26 16 9 C 0.71 23.90 8.37 179.05 1.50 25.40 16 10 O -0.62 -27.54 14.12 -3.97 -0.06 -27.60 16 11 N -0.65 -20.28 5.27 -316.78 -1.67 -21.95 16 12 C 0.04 1.56 6.30 38.57 0.24 1.80 16 13 C -0.08 -4.03 8.61 22.13 0.19 -3.84 16 14 C -0.24 -12.43 6.93 22.48 0.16 -12.27 16 15 C 0.06 3.37 5.13 -21.27 -0.11 3.27 16 16 C -0.48 -27.32 9.59 23.39 0.22 -27.09 16 17 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 18 C 0.05 2.64 5.47 85.24 0.47 3.10 16 19 N -0.85 -48.61 13.93 21.82 0.30 -48.31 16 20 Si 0.96 46.09 24.40 68.60 1.67 47.76 16 21 H -0.27 -13.00 6.67 99.48 0.66 -12.34 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.25 -12.16 6.67 99.48 0.66 -11.49 16 24 C -0.20 -8.70 9.74 22.48 0.22 -8.48 16 25 C -0.09 -3.19 9.90 22.13 0.22 -2.97 16 26 C 0.14 2.64 6.26 86.53 0.54 3.18 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.43 2.56 9.10 -74.06 -0.67 1.88 16 31 H 0.13 0.63 7.86 -2.39 -0.02 0.61 16 32 H 0.07 1.20 6.92 -2.39 -0.02 1.19 16 33 H 0.09 0.92 6.78 -2.39 -0.02 0.90 16 34 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.42 9.01 7.14 -92.71 -0.66 8.35 16 36 H 0.10 5.12 6.24 -2.91 -0.02 5.11 16 37 H 0.09 4.79 4.40 -2.91 -0.01 4.78 16 38 H 0.29 15.03 8.30 -92.70 -0.77 14.26 16 39 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.10 1.59 7.68 -2.39 -0.02 1.57 16 42 H 0.05 1.37 7.54 -2.39 -0.02 1.36 16 Total: -1.00 -80.21 344.68 2.32 -77.89 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.34 Total: 19.13 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.46 Total: -9.13 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -4.09 Total: -87.53 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.38 Total: -48.11 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.67 Total: 47.76 kcal Total: -80.21 2.32 -77.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062935356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.223 kcal (2) G-P(sol) polarization free energy of solvation -80.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds