Wall clock time and date at job start Tue Mar 31 2020 13:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 110.64380 * 2 1 4 4 O 1.20830 * 120.00485 * 118.30620 * 3 2 1 5 5 O 1.34236 * 119.99680 * 298.31101 * 3 2 1 6 6 C 1.55158 * 110.86784 * 123.24544 * 2 1 3 7 7 C 1.55129 * 101.48713 * 82.76882 * 6 2 1 8 8 N 1.47417 * 104.72239 * 37.29262 * 7 6 2 9 9 C 1.34779 * 125.64667 * 155.81772 * 8 7 6 10 10 O 1.21582 * 119.99607 * 179.69090 * 9 8 7 11 11 N 1.34774 * 120.00065 * 359.69343 * 9 8 7 12 12 C 1.39244 * 120.00129 * 185.14602 * 11 9 8 13 13 C 1.39474 * 119.83550 * 214.19549 * 12 11 9 14 14 C 1.36379 * 120.16481 * 179.75928 * 13 12 11 15 15 C 1.40863 * 119.82892 * 0.54183 * 14 13 12 16 16 C 1.41159 * 120.16294 * 179.68915 * 15 14 13 17 17 H 1.07999 * 120.00445 * 205.38020 * 16 15 14 18 18 C 1.39896 * 119.99979 * 25.38819 * 16 15 14 19 19 N 1.30883 * 119.99745 * 16.81695 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 196.82032 * 18 16 15 21 21 H 1.48502 * 109.47066 * 89.99763 * 20 18 16 22 22 H 1.48502 * 109.47262 * 209.99716 * 20 18 16 23 23 H 1.48497 * 109.47111 * 329.99652 * 20 18 16 24 24 C 1.40868 * 119.67474 * 359.71934 * 15 14 13 25 25 C 1.36376 * 119.82614 * 359.97438 * 24 15 14 26 26 C 1.47020 * 108.70507 * 335.55515 * 8 7 6 27 27 H 1.09000 * 109.47511 * 181.68657 * 1 2 3 28 28 H 1.09002 * 109.47603 * 301.69453 * 1 2 3 29 29 H 1.09007 * 109.46729 * 61.69084 * 1 2 3 30 30 H 0.96699 * 116.99679 * 180.02562 * 5 3 2 31 31 H 1.09007 * 111.00191 * 201.00518 * 6 2 1 32 32 H 1.09002 * 111.00687 * 324.81909 * 6 2 1 33 33 H 1.09004 * 110.49088 * 278.44855 * 7 6 2 34 34 H 1.09002 * 110.34539 * 156.06142 * 7 6 2 35 35 H 0.96995 * 119.99700 * 5.15505 * 11 9 8 36 36 H 1.07996 * 119.91750 * 0.02562 * 13 12 11 37 37 H 1.08007 * 120.08409 * 180.27878 * 14 13 12 38 38 H 0.97005 * 119.99700 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.08849 * 180.02562 * 24 15 14 40 40 H 1.08002 * 119.91326 * 180.02562 * 25 24 15 41 41 H 1.08994 * 109.88595 * 120.70378 * 26 8 7 42 42 H 1.09003 * 109.88161 * 241.71672 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7386 1.8007 0.9212 5 8 1.7819 2.2326 -1.0235 6 6 2.0827 -0.7948 1.2125 7 6 2.0139 -2.2517 0.6841 8 7 2.3756 -2.1507 -0.7414 9 6 2.8902 -3.1437 -1.4935 10 8 3.1466 -2.9480 -2.6657 11 7 3.1205 -4.3536 -0.9461 12 6 3.7505 -5.3466 -1.6917 13 6 3.3956 -6.6828 -1.5077 14 6 4.0048 -7.6604 -2.2379 15 6 5.0027 -7.3187 -3.1715 16 6 5.6424 -8.3255 -3.9263 17 1 6.6363 -8.1597 -4.3151 18 6 4.9889 -9.5380 -4.1710 19 7 3.6946 -9.6300 -4.0000 20 14 5.9637 -11.0258 -4.7417 21 1 6.4249 -11.7983 -3.5603 22 1 5.1012 -11.8870 -5.5902 23 1 7.1398 -10.5751 -5.5283 24 6 5.3595 -5.9675 -3.3478 25 6 4.7371 -5.0004 -2.6149 26 6 2.0760 -0.7893 -1.2085 27 1 -0.3634 -1.0272 0.0302 28 1 -0.3634 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9048 30 1 2.1451 3.1277 -0.9791 31 1 3.1095 -0.5043 1.4348 32 1 1.4447 -0.6671 2.0871 33 1 1.0049 -2.6497 0.7924 34 1 2.7295 -2.8810 1.2134 35 1 2.8473 -4.5326 -0.0328 36 1 2.6335 -6.9436 -0.7883 37 1 3.7258 -8.6944 -2.0976 38 1 3.2415 -10.4709 -4.1693 39 1 6.1234 -5.6979 -4.0621 40 1 5.0092 -3.9639 -2.7492 41 1 2.9850 -0.3163 -1.5799 42 1 1.3271 -0.8252 -1.9997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062935357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:51 Heat of formation + Delta-G solvation = -91.333171 kcal Electronic energy + Delta-G solvation = -26022.330909 eV Core-core repulsion = 22160.191680 eV Total energy + Delta-G solvation = -3862.139229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22975 -39.96437 -38.27355 -37.01429 -36.44866 -34.43460 -33.40103 -32.57964 -29.87834 -29.54879 -28.89831 -27.13715 -25.27661 -24.13858 -23.28059 -21.47773 -20.75369 -20.11646 -19.39229 -18.23774 -18.11256 -17.29879 -16.83689 -16.53595 -15.96706 -15.60534 -15.20951 -14.90264 -14.56911 -14.04797 -13.88594 -13.77232 -13.20676 -13.05159 -13.00369 -12.70046 -12.63292 -12.33454 -12.10190 -12.00919 -11.86237 -11.81574 -11.46882 -11.31303 -11.22379 -11.11377 -10.98254 -10.80061 -10.71924 -10.04844 -9.56451 -9.51809 -9.17502 -8.91637 -8.62329 -7.51165 -6.93637 -6.70789 -4.26735 1.77223 2.47423 2.66803 2.89572 3.08341 3.12044 3.12756 3.16921 3.67521 3.78989 3.95316 4.08255 4.36336 4.42559 4.66287 4.72687 4.81796 4.94358 5.17478 5.29765 5.34027 5.42005 5.50686 5.59745 5.66347 5.72499 5.80733 6.08002 6.12534 6.23047 6.44753 6.80278 6.88109 7.06762 7.14204 7.29271 7.37124 7.49703 7.64015 7.88231 7.97015 8.07269 8.31276 8.44147 8.63164 8.91684 8.92983 9.10576 10.21146 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.002362 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.628596 B =11849.409029 C =12083.477046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.498 3.502 4 O -0.509 6.509 5 O -0.510 6.510 6 C -0.111 4.111 7 C 0.098 3.902 8 N -0.642 5.642 9 C 0.714 3.286 10 O -0.571 6.571 11 N -0.662 5.662 12 C 0.011 3.989 13 C -0.114 4.114 14 C -0.152 4.152 15 C 0.104 3.896 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.794 5.794 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.213 4.213 25 C -0.077 4.077 26 C 0.148 3.852 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.411 0.589 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.391 0.609 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 15.991 10.884 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C 0.339 3.661 4 O -0.397 6.397 5 O -0.321 6.321 6 C -0.149 4.149 7 C -0.025 4.025 8 N -0.383 5.383 9 C 0.416 3.584 10 O -0.448 6.448 11 N -0.308 5.308 12 C -0.081 4.081 13 C -0.135 4.135 14 C -0.172 4.172 15 C 0.102 3.898 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.234 4.234 25 C -0.097 4.097 26 C 0.024 3.976 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.270 0.730 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.607 15.615 10.144 20.115 hybrid contribution 0.340 -0.105 0.225 0.421 sum -7.267 15.510 10.370 20.023 Atomic orbital electron populations 1.21841 0.90145 1.03993 1.03370 1.21556 0.98515 0.88031 0.98936 1.22983 0.76539 0.87704 0.78882 1.90733 1.36191 1.76577 1.36173 1.84552 1.72470 1.28395 1.46724 1.22879 1.03441 0.92846 0.95692 1.22365 1.01007 0.97105 0.82015 1.47502 1.69027 1.11108 1.10681 1.15476 0.78622 0.80119 0.84143 1.90943 1.58019 1.81470 1.14338 1.42100 1.62166 1.10685 1.15799 1.16959 1.00895 0.86285 1.03966 1.20182 1.00314 0.91568 1.01399 1.20883 1.00789 0.98297 0.97254 1.17655 0.90897 0.91357 0.89938 1.19554 1.02291 0.97803 1.29149 0.90394 1.25918 0.94641 1.00143 0.93647 1.69854 1.08615 1.26986 1.36543 0.86297 0.80450 0.80612 0.79260 1.19320 1.20372 1.18638 1.20647 1.05645 0.92779 1.04288 1.20255 0.94638 0.98188 0.96586 1.21553 1.00841 0.81205 0.94043 0.90341 0.91564 0.90666 0.72950 0.88969 0.88814 0.90991 0.90111 0.77585 0.89242 0.86063 0.90925 0.88723 0.88097 0.91269 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.41 37.16 0.31 -0.56 16 2 C -0.07 -0.59 0.86 -153.83 -0.13 -0.72 16 3 C 0.50 4.63 6.83 36.00 0.25 4.87 16 4 O -0.51 -6.06 16.52 -18.75 -0.31 -6.37 16 5 O -0.51 -3.62 13.38 -39.27 -0.53 -4.14 16 6 C -0.11 -0.89 5.65 -24.46 -0.14 -1.03 16 7 C 0.10 0.89 6.23 -2.41 -0.02 0.88 16 8 N -0.64 -8.63 3.32 -176.11 -0.59 -9.22 16 9 C 0.71 13.26 8.21 -86.92 -0.71 12.54 16 10 O -0.57 -13.19 14.39 5.29 0.08 -13.12 16 11 N -0.66 -12.07 5.26 -14.10 -0.07 -12.14 16 12 C 0.01 0.26 6.27 -83.57 -0.52 -0.26 16 13 C -0.11 -2.63 9.89 -39.79 -0.39 -3.02 16 14 C -0.15 -3.93 8.63 -39.26 -0.34 -4.27 16 15 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 16 C -0.46 -12.27 9.04 -37.85 -0.34 -12.61 16 17 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 18 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 19 N -0.79 -20.61 10.95 55.55 0.61 -20.01 16 20 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 24 C -0.21 -5.51 9.74 -39.26 -0.38 -5.89 16 25 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 26 C 0.15 1.72 6.02 -3.07 -0.02 1.70 16 27 H 0.08 0.48 7.44 -51.93 -0.39 0.10 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.41 1.20 9.10 45.56 0.41 1.62 16 31 H 0.09 0.87 7.49 -51.93 -0.39 0.48 16 32 H 0.09 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 34 H 0.08 0.68 7.37 -51.93 -0.38 0.29 16 35 H 0.39 5.62 7.35 -40.82 -0.30 5.32 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 3.19 6.18 -52.48 -0.32 2.87 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.09 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.10 2.48 6.47 -52.49 -0.34 2.14 16 41 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 42 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -33.99 351.21 -8.59 -42.58 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.58 Total: 10.02 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.47 Total: -6.60 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.05 Total: -41.36 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.76 Total: -23.63 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.99 -8.59 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062935357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.752 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds