Wall clock time and date at job start Tue Mar 31 2020 13:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 110.64380 * 2 1 4 4 O 1.20830 * 120.00485 * 118.30620 * 3 2 1 5 5 O 1.34236 * 119.99680 * 298.31101 * 3 2 1 6 6 C 1.55158 * 110.86784 * 123.24544 * 2 1 3 7 7 C 1.55129 * 101.48713 * 82.76882 * 6 2 1 8 8 N 1.47417 * 104.72239 * 37.29262 * 7 6 2 9 9 C 1.34779 * 125.64667 * 155.81772 * 8 7 6 10 10 O 1.21582 * 119.99607 * 179.69090 * 9 8 7 11 11 N 1.34774 * 120.00065 * 359.69343 * 9 8 7 12 12 C 1.39244 * 120.00129 * 185.14602 * 11 9 8 13 13 C 1.39474 * 119.83550 * 214.19549 * 12 11 9 14 14 C 1.36379 * 120.16481 * 179.75928 * 13 12 11 15 15 C 1.40863 * 119.82892 * 0.54183 * 14 13 12 16 16 C 1.41159 * 120.16294 * 179.68915 * 15 14 13 17 17 H 1.07999 * 120.00445 * 205.38020 * 16 15 14 18 18 C 1.39896 * 119.99979 * 25.38819 * 16 15 14 19 19 N 1.30883 * 119.99745 * 16.81695 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 196.82032 * 18 16 15 21 21 H 1.48502 * 109.47066 * 89.99763 * 20 18 16 22 22 H 1.48502 * 109.47262 * 209.99716 * 20 18 16 23 23 H 1.48497 * 109.47111 * 329.99652 * 20 18 16 24 24 C 1.40868 * 119.67474 * 359.71934 * 15 14 13 25 25 C 1.36376 * 119.82614 * 359.97438 * 24 15 14 26 26 C 1.47020 * 108.70507 * 335.55515 * 8 7 6 27 27 H 1.09000 * 109.47511 * 181.68657 * 1 2 3 28 28 H 1.09002 * 109.47603 * 301.69453 * 1 2 3 29 29 H 1.09007 * 109.46729 * 61.69084 * 1 2 3 30 30 H 0.96699 * 116.99679 * 180.02562 * 5 3 2 31 31 H 1.09007 * 111.00191 * 201.00518 * 6 2 1 32 32 H 1.09002 * 111.00687 * 324.81909 * 6 2 1 33 33 H 1.09004 * 110.49088 * 278.44855 * 7 6 2 34 34 H 1.09002 * 110.34539 * 156.06142 * 7 6 2 35 35 H 0.96995 * 119.99700 * 5.15505 * 11 9 8 36 36 H 1.07996 * 119.91750 * 0.02562 * 13 12 11 37 37 H 1.08007 * 120.08409 * 180.27878 * 14 13 12 38 38 H 0.97005 * 119.99700 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.08849 * 180.02562 * 24 15 14 40 40 H 1.08002 * 119.91326 * 180.02562 * 25 24 15 41 41 H 1.08994 * 109.88595 * 120.70378 * 26 8 7 42 42 H 1.09003 * 109.88161 * 241.71672 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 8 2.7386 1.8007 0.9212 5 8 1.7819 2.2326 -1.0235 6 6 2.0827 -0.7948 1.2125 7 6 2.0139 -2.2517 0.6841 8 7 2.3756 -2.1507 -0.7414 9 6 2.8902 -3.1437 -1.4935 10 8 3.1466 -2.9480 -2.6657 11 7 3.1205 -4.3536 -0.9461 12 6 3.7505 -5.3466 -1.6917 13 6 3.3956 -6.6828 -1.5077 14 6 4.0048 -7.6604 -2.2379 15 6 5.0027 -7.3187 -3.1715 16 6 5.6424 -8.3255 -3.9263 17 1 6.6363 -8.1597 -4.3151 18 6 4.9889 -9.5380 -4.1710 19 7 3.6946 -9.6300 -4.0000 20 14 5.9637 -11.0258 -4.7417 21 1 6.4249 -11.7983 -3.5603 22 1 5.1012 -11.8870 -5.5902 23 1 7.1398 -10.5751 -5.5283 24 6 5.3595 -5.9675 -3.3478 25 6 4.7371 -5.0004 -2.6149 26 6 2.0760 -0.7893 -1.2085 27 1 -0.3634 -1.0272 0.0302 28 1 -0.3634 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9048 30 1 2.1451 3.1277 -0.9791 31 1 3.1095 -0.5043 1.4348 32 1 1.4447 -0.6671 2.0871 33 1 1.0049 -2.6497 0.7924 34 1 2.7295 -2.8810 1.2134 35 1 2.8473 -4.5326 -0.0328 36 1 2.6335 -6.9436 -0.7883 37 1 3.7258 -8.6944 -2.0976 38 1 3.2415 -10.4709 -4.1693 39 1 6.1234 -5.6979 -4.0621 40 1 5.0092 -3.9639 -2.7492 41 1 2.9850 -0.3163 -1.5799 42 1 1.3271 -0.8252 -1.9997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062935357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:51 Heat of formation + Delta-G solvation = -113.858071 kcal Electronic energy + Delta-G solvation = -26023.307662 eV Core-core repulsion = 22160.191680 eV Total energy + Delta-G solvation = -3863.115982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10270 -41.22106 -39.60389 -38.52211 -37.17190 -36.18937 -34.91010 -33.86721 -31.46745 -30.75873 -30.63830 -28.05233 -26.72086 -25.34526 -24.14485 -23.26707 -22.54037 -20.95105 -20.74964 -19.42404 -19.17378 -18.93829 -17.99322 -17.70444 -17.08017 -16.90190 -16.60607 -16.24426 -15.78316 -15.60138 -15.02499 -14.73839 -14.63009 -14.36224 -14.13597 -13.96698 -13.79134 -13.66317 -13.37738 -13.22806 -13.04613 -12.84152 -12.75824 -12.74672 -12.55959 -12.46112 -12.15252 -11.89419 -11.78987 -11.55350 -11.43279 -11.23879 -11.03255 -10.71680 -9.77642 -9.45842 -8.81180 -8.57832 -6.25634 0.84700 1.02490 1.15162 1.40489 1.46433 1.53932 1.55098 2.02918 2.15731 2.23788 2.76717 3.00444 3.17159 3.37588 3.72251 3.74931 4.02510 4.19827 4.23675 4.39545 4.48692 4.53477 4.55477 4.66675 4.78041 4.85813 4.89412 4.94087 5.03185 5.08285 5.16003 5.19862 5.28334 5.34635 5.44884 5.52268 5.64964 5.79771 6.05013 6.11403 6.16566 6.38787 6.66871 6.90564 6.94632 6.98707 7.01331 7.59491 8.35430 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.002362 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.628596 B =11849.409029 C =12083.477046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C 0.501 3.499 4 O -0.538 6.538 5 O -0.508 6.508 6 C -0.104 4.104 7 C 0.092 3.908 8 N -0.635 5.635 9 C 0.710 3.290 10 O -0.624 6.624 11 N -0.653 5.653 12 C 0.028 3.972 13 C -0.110 4.110 14 C -0.169 4.169 15 C 0.074 3.926 16 C -0.496 4.496 17 H 0.073 0.927 18 C 0.035 3.965 19 N -0.825 5.825 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.232 4.232 25 C -0.088 4.088 26 C 0.143 3.857 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.429 0.571 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.289 0.711 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 16.168 12.736 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 C 0.344 3.656 4 O -0.428 6.428 5 O -0.321 6.321 6 C -0.142 4.142 7 C -0.030 4.030 8 N -0.374 5.374 9 C 0.413 3.587 10 O -0.504 6.504 11 N -0.301 5.301 12 C -0.066 4.066 13 C -0.130 4.130 14 C -0.189 4.189 15 C 0.072 3.928 16 C -0.526 4.526 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.451 5.451 20 Si 0.806 3.194 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.252 4.252 25 C -0.109 4.109 26 C 0.019 3.981 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.292 0.708 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.267 15.858 12.063 21.974 hybrid contribution 0.763 0.063 -0.306 0.824 sum -8.505 15.920 11.757 21.541 Atomic orbital electron populations 1.21863 0.87994 1.04804 1.04298 1.21552 1.00020 0.87206 0.97450 1.23074 0.75796 0.88088 0.78655 1.90729 1.37443 1.77264 1.37360 1.84519 1.72221 1.29609 1.45760 1.22886 1.03241 0.91655 0.96391 1.22749 1.02820 0.98356 0.79045 1.47434 1.67193 1.10446 1.12312 1.15618 0.78530 0.80704 0.83864 1.90909 1.60132 1.82438 1.16945 1.41839 1.61830 1.09934 1.16480 1.16981 0.99551 0.87313 1.02785 1.20438 1.00295 0.91011 1.01276 1.20910 1.01392 0.98611 0.97997 1.17972 0.92038 0.91867 0.90972 1.19772 1.02601 0.99408 1.30777 0.90869 1.26754 0.95516 1.02488 0.93258 1.69889 1.09943 1.28198 1.37039 0.85164 0.78744 0.76509 0.79023 1.18317 1.19235 1.18603 1.20757 1.06321 0.93055 1.05065 1.20333 0.95477 0.97621 0.97428 1.21661 1.00134 0.80581 0.95703 0.89614 0.89767 0.90632 0.70841 0.90578 0.85748 0.88114 0.89079 0.74994 0.85631 0.86944 0.90019 0.88964 0.88552 0.93163 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.41 71.98 0.61 -0.66 16 2 C -0.06 -0.90 0.86 -51.74 -0.04 -0.94 16 3 C 0.50 8.49 6.83 71.23 0.49 8.98 16 4 O -0.54 -12.08 16.52 21.95 0.36 -11.72 16 5 O -0.51 -6.39 13.38 -51.47 -0.69 -7.08 16 6 C -0.10 -1.36 5.65 32.06 0.18 -1.18 16 7 C 0.09 1.36 6.23 86.93 0.54 1.90 16 8 N -0.64 -16.08 3.32 -829.34 -2.76 -18.83 16 9 C 0.71 25.89 8.21 179.05 1.47 27.36 16 10 O -0.62 -29.30 14.39 -3.97 -0.06 -29.35 16 11 N -0.65 -22.81 5.26 -316.79 -1.67 -24.47 16 12 C 0.03 1.24 6.27 38.56 0.24 1.48 16 13 C -0.11 -4.97 9.89 22.13 0.22 -4.75 16 14 C -0.17 -8.87 8.63 22.48 0.19 -8.67 16 15 C 0.07 4.15 5.57 -21.28 -0.12 4.03 16 16 C -0.50 -27.49 9.04 23.39 0.21 -27.28 16 17 H 0.07 3.95 7.90 -2.91 -0.02 3.92 16 18 C 0.03 1.76 5.15 85.24 0.44 2.20 16 19 N -0.82 -43.28 10.95 21.82 0.24 -43.04 16 20 Si 0.98 38.55 29.59 68.60 2.03 40.58 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 24 C -0.23 -12.50 9.74 22.48 0.22 -12.28 16 25 C -0.09 -4.45 8.57 22.14 0.19 -4.26 16 26 C 0.14 3.19 6.02 86.73 0.52 3.71 16 27 H 0.09 0.72 7.44 -2.39 -0.02 0.71 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 31 H 0.08 1.29 7.49 -2.38 -0.02 1.27 16 32 H 0.12 0.93 8.04 -2.39 -0.02 0.91 16 33 H 0.10 1.02 7.71 -2.39 -0.02 1.00 16 34 H 0.09 1.21 7.37 -2.39 -0.02 1.19 16 35 H 0.41 10.68 7.35 -92.71 -0.68 10.00 16 36 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.11 6.03 6.18 -2.91 -0.02 6.01 16 38 H 0.29 13.62 8.30 -92.70 -0.77 12.85 16 39 H 0.09 4.82 8.06 -2.91 -0.02 4.79 16 40 H 0.10 4.90 6.47 -2.91 -0.02 4.88 16 41 H 0.05 1.31 7.81 -2.39 -0.02 1.29 16 42 H 0.08 1.81 7.85 -2.39 -0.02 1.79 16 Total: -1.00 -76.73 351.21 2.54 -74.19 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.28 Total: 30.07 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.36 Total: -10.34 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -4.18 Total: -86.35 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.38 Total: -48.15 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -76.73 2.54 -74.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062935357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.666 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds