Wall clock time and date at job start Tue Mar 31 2020 13:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37662 * 119.95977 * 2 1 4 4 C 1.39796 * 119.92274 * 179.97438 * 3 2 1 5 5 C 1.47440 * 120.08086 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00165 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00259 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00230 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.47133 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00212 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00272 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00364 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99594 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47511 * 90.00078 * 14 12 10 16 16 H 1.48506 * 109.47241 * 209.99675 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99809 * 14 12 10 18 18 C 1.39838 * 119.83761 * 359.72471 * 4 3 2 19 19 C 1.37611 * 119.92360 * 0.54801 * 18 4 3 20 20 C 1.39129 * 119.96409 * 179.97438 * 2 1 3 21 21 N 1.39399 * 119.91811 * 359.97438 * 20 2 1 22 22 C 1.47053 * 125.41671 * 270.02288 * 21 20 2 23 23 C 1.54100 * 103.86857 * 180.02562 * 22 21 20 24 24 N 1.47059 * 103.85857 * 0.02562 * 23 22 21 25 25 C 1.33948 * 109.18023 * 359.73357 * 24 23 22 26 26 O 1.21580 * 123.03986 * 180.26852 * 25 24 23 27 27 H 1.09002 * 109.47733 * 270.02567 * 1 2 3 28 28 H 1.09003 * 109.47651 * 30.02778 * 1 2 3 29 29 H 1.09006 * 109.47259 * 150.02588 * 1 2 3 30 30 H 1.08007 * 120.03558 * 359.94858 * 3 2 1 31 31 H 1.08999 * 109.47238 * 299.99919 * 8 7 5 32 32 H 1.09001 * 109.46944 * 60.00380 * 8 7 5 33 33 H 1.09007 * 109.46925 * 299.99849 * 9 8 7 34 34 H 1.08998 * 109.47193 * 59.99742 * 9 8 7 35 35 H 0.96998 * 120.00013 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.04004 * 180.27546 * 18 4 3 37 37 H 1.08002 * 119.96512 * 179.73355 * 19 18 4 38 38 H 1.09006 * 110.54701 * 298.60347 * 22 21 20 39 39 H 1.09006 * 110.54560 * 61.40342 * 22 21 20 40 40 H 1.09001 * 110.54601 * 118.58977 * 23 22 21 41 41 H 1.08994 * 110.55211 * 241.40964 * 23 22 21 42 42 H 0.97002 * 125.40879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1927 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3322 2.4671 0.0000 6 8 3.7268 3.5207 -0.0014 7 8 5.6796 2.4644 0.0010 8 6 6.3415 3.7568 0.0010 9 6 7.8580 3.5532 0.0029 10 6 8.5449 4.8945 0.0034 11 1 7.9585 5.8015 0.0021 12 6 9.9219 4.9639 0.0056 13 7 10.5214 6.1345 0.0067 14 14 10.9360 3.3952 0.0072 15 1 11.2071 2.9795 -1.3924 16 1 12.2220 3.6377 0.7093 17 1 10.1854 2.3212 0.7060 18 6 4.2873 -0.0217 0.0069 19 6 3.5936 -1.2101 0.0012 20 6 2.2018 -1.2053 0.0005 21 7 1.5023 -2.4111 0.0016 22 6 1.0748 -3.1472 1.2007 23 6 0.3561 -4.3878 0.6358 24 7 0.4556 -4.2194 -0.8217 25 6 1.1091 -3.0812 -1.0895 26 8 1.3284 -2.6932 -2.2207 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3634 -0.8903 -0.5135 30 1 1.6543 2.1280 -0.0008 31 1 6.0505 4.3140 -0.8895 32 1 6.0491 4.3148 0.8905 33 1 8.1487 2.9962 0.8936 34 1 8.1508 2.9950 -0.8864 35 1 11.4901 6.1833 0.0078 36 1 5.3673 -0.0262 0.0118 37 1 4.1297 -2.1477 0.0018 38 1 1.9385 -3.4437 1.7959 39 1 0.3881 -2.5444 1.7951 40 1 0.8631 -5.3000 0.9506 41 1 -0.6877 -4.4013 0.9494 42 1 0.1004 -4.8328 -1.4839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064084789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:10 Heat of formation + Delta-G solvation = -71.915650 kcal Electronic energy + Delta-G solvation = -25562.294597 eV Core-core repulsion = 21700.997375 eV Total energy + Delta-G solvation = -3861.297222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79870 -40.26748 -38.92575 -36.75470 -36.19316 -34.66191 -33.34684 -32.99420 -30.96773 -30.43759 -29.22291 -27.30672 -25.71038 -24.28919 -23.46559 -22.22148 -21.60645 -20.68891 -20.12412 -18.33044 -17.68566 -17.26246 -17.08413 -16.77895 -16.20719 -16.02432 -15.51068 -15.30874 -14.62709 -14.51707 -14.23141 -14.20127 -13.92960 -13.51448 -13.50217 -13.44938 -13.03063 -12.91940 -12.75816 -12.45228 -12.20451 -12.11409 -11.54221 -11.48672 -11.26087 -10.70942 -10.66955 -10.62181 -10.01672 -9.93500 -9.80330 -9.71045 -9.34766 -9.23297 -9.18261 -8.96430 -8.61927 -6.12460 -4.13691 0.41911 1.09095 2.04037 2.54344 2.69791 3.02114 3.28525 3.35728 3.38078 3.39673 3.55498 3.81254 4.29246 4.38925 4.48671 4.54929 4.67331 4.81080 4.83281 4.97372 5.05826 5.09365 5.15030 5.21048 5.27730 5.32272 5.37831 5.59153 5.80766 5.88349 5.97094 5.97898 6.13273 6.15863 6.27612 6.45146 6.56328 6.72561 6.76714 6.96122 7.17530 7.21742 7.62535 8.07769 8.16479 8.40052 8.89288 9.46957 11.00062 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.002399 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.307023 B =11667.159157 C =12392.403780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.089 4.089 3 C -0.050 4.050 4 C -0.106 4.106 5 C 0.502 3.498 6 O -0.509 6.509 7 O -0.355 6.355 8 C 0.083 3.917 9 C -0.009 4.009 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.882 3.118 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.058 4.058 19 C -0.117 4.117 20 C 0.189 3.811 21 N -0.592 5.592 22 C 0.093 3.907 23 C 0.093 3.907 24 N -0.741 5.741 25 C 0.702 3.298 26 O -0.571 6.571 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.667 -24.844 4.877 34.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.107 4.107 5 C 0.346 3.654 6 O -0.399 6.399 7 O -0.272 6.272 8 C 0.011 3.989 9 C -0.047 4.047 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.077 4.077 19 C -0.136 4.136 20 C 0.099 3.901 21 N -0.327 5.327 22 C -0.029 4.029 23 C -0.032 4.032 24 N -0.404 5.404 25 C 0.403 3.597 26 O -0.446 6.446 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -23.432 -24.094 4.307 33.884 hybrid contribution 0.511 -0.898 -0.153 1.044 sum -22.921 -24.992 4.154 34.165 Atomic orbital electron populations 1.20694 0.90233 1.03230 1.02300 1.19992 0.96825 0.91634 1.00621 1.21052 0.92182 0.98188 0.95490 1.19355 0.93279 0.91585 1.06498 1.20960 0.82118 0.88938 0.73362 1.90823 1.69900 1.33334 1.45830 1.86531 1.19011 1.38764 1.82867 1.23435 0.94069 0.79479 1.01966 1.19634 0.88194 0.98932 0.97921 1.20836 0.91898 0.91411 1.52372 0.90618 1.24940 0.97689 0.96276 0.94141 1.69896 1.09711 1.23765 1.50101 0.86747 0.79652 0.84022 0.78749 1.20049 1.21197 1.18752 1.21434 1.01304 0.90357 0.94569 1.21280 0.92726 0.98894 1.00745 1.17008 0.89594 0.82649 1.00861 1.44059 1.59622 1.22294 1.06721 1.22524 1.00009 0.91942 0.88454 1.22378 1.01711 0.98318 0.80771 1.45057 1.62190 1.24894 1.08223 1.15841 0.78747 0.80786 0.84323 1.91026 1.61807 1.71133 1.20667 0.90933 0.90868 0.91700 0.83828 0.91528 0.91514 0.95340 0.95743 0.92435 0.83404 0.84891 0.89414 0.89529 0.89617 0.89670 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.76 36.00 0.35 -0.56 16 2 C -0.09 -0.97 5.89 -104.51 -0.62 -1.59 16 3 C -0.05 -0.63 9.23 -39.21 -0.36 -0.99 16 4 C -0.11 -1.51 5.87 -104.97 -0.62 -2.12 16 5 C 0.50 8.90 7.89 34.48 0.27 9.17 16 6 O -0.51 -10.13 16.13 -19.27 -0.31 -10.45 16 7 O -0.36 -6.82 9.46 -40.62 -0.38 -7.20 16 8 C 0.08 1.79 5.41 37.16 0.20 1.99 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 10 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 11 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 12 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 14 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 18 C -0.06 -0.72 9.60 -39.21 -0.38 -1.09 16 19 C -0.12 -1.28 9.95 -39.46 -0.39 -1.67 16 20 C 0.19 2.05 5.40 -83.74 -0.45 1.60 16 21 N -0.59 -5.23 2.04 -118.24 -0.24 -5.47 16 22 C 0.09 0.38 7.61 -3.17 -0.02 0.36 16 23 C 0.09 0.23 8.06 -3.16 -0.03 0.20 16 24 N -0.74 -4.44 6.37 -64.70 -0.41 -4.86 16 25 C 0.70 7.50 7.96 -88.39 -0.70 6.79 16 26 O -0.57 -9.02 17.65 5.30 0.09 -8.92 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.06 0.59 6.95 -51.93 -0.36 0.23 16 30 H 0.14 1.71 7.64 -52.48 -0.40 1.31 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.03 0.68 7.20 -51.92 -0.37 0.30 16 34 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 35 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 36 H 0.15 1.75 7.60 -52.48 -0.40 1.35 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.43 1.89 8.96 -40.82 -0.37 1.52 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -36.67 361.38 -8.68 -45.36 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -5.68 Total: -2.40 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.30 Total: -1.63 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.12 Total: -36.97 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.60 Total: -26.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.67 -8.68 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064084789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.560 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds