Wall clock time and date at job start Tue Mar 31 2020 13:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37662 * 119.95977 * 2 1 4 4 C 1.39796 * 119.92274 * 179.97438 * 3 2 1 5 5 C 1.47440 * 120.08086 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00165 * 359.97438 * 5 4 3 7 7 O 1.34747 * 120.00259 * 179.97438 * 5 4 3 8 8 C 1.45200 * 117.00230 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.47133 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00212 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00272 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00364 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99594 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47511 * 90.00078 * 14 12 10 16 16 H 1.48506 * 109.47241 * 209.99675 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99809 * 14 12 10 18 18 C 1.39838 * 119.83761 * 359.72471 * 4 3 2 19 19 C 1.37611 * 119.92360 * 0.54801 * 18 4 3 20 20 C 1.39129 * 119.96409 * 179.97438 * 2 1 3 21 21 N 1.39399 * 119.91811 * 359.97438 * 20 2 1 22 22 C 1.47053 * 125.41671 * 270.02288 * 21 20 2 23 23 C 1.54100 * 103.86857 * 180.02562 * 22 21 20 24 24 N 1.47059 * 103.85857 * 0.02562 * 23 22 21 25 25 C 1.33948 * 109.18023 * 359.73357 * 24 23 22 26 26 O 1.21580 * 123.03986 * 180.26852 * 25 24 23 27 27 H 1.09002 * 109.47733 * 270.02567 * 1 2 3 28 28 H 1.09003 * 109.47651 * 30.02778 * 1 2 3 29 29 H 1.09006 * 109.47259 * 150.02588 * 1 2 3 30 30 H 1.08007 * 120.03558 * 359.94858 * 3 2 1 31 31 H 1.08999 * 109.47238 * 299.99919 * 8 7 5 32 32 H 1.09001 * 109.46944 * 60.00380 * 8 7 5 33 33 H 1.09007 * 109.46925 * 299.99849 * 9 8 7 34 34 H 1.08998 * 109.47193 * 59.99742 * 9 8 7 35 35 H 0.96998 * 120.00013 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.04004 * 180.27546 * 18 4 3 37 37 H 1.08002 * 119.96512 * 179.73355 * 19 18 4 38 38 H 1.09006 * 110.54701 * 298.60347 * 22 21 20 39 39 H 1.09006 * 110.54560 * 61.40342 * 22 21 20 40 40 H 1.09001 * 110.54601 * 118.58977 * 23 22 21 41 41 H 1.08994 * 110.55211 * 241.40964 * 23 22 21 42 42 H 0.97002 * 125.40879 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1927 0.0000 4 6 3.5923 1.1918 0.0005 5 6 4.3322 2.4671 0.0000 6 8 3.7268 3.5207 -0.0014 7 8 5.6796 2.4644 0.0010 8 6 6.3415 3.7568 0.0010 9 6 7.8580 3.5532 0.0029 10 6 8.5449 4.8945 0.0034 11 1 7.9585 5.8015 0.0021 12 6 9.9219 4.9639 0.0056 13 7 10.5214 6.1345 0.0067 14 14 10.9360 3.3952 0.0072 15 1 11.2071 2.9795 -1.3924 16 1 12.2220 3.6377 0.7093 17 1 10.1854 2.3212 0.7060 18 6 4.2873 -0.0217 0.0069 19 6 3.5936 -1.2101 0.0012 20 6 2.2018 -1.2053 0.0005 21 7 1.5023 -2.4111 0.0016 22 6 1.0748 -3.1472 1.2007 23 6 0.3561 -4.3878 0.6358 24 7 0.4556 -4.2194 -0.8217 25 6 1.1091 -3.0812 -1.0895 26 8 1.3284 -2.6932 -2.2207 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3634 -0.8903 -0.5135 30 1 1.6543 2.1280 -0.0008 31 1 6.0505 4.3140 -0.8895 32 1 6.0491 4.3148 0.8905 33 1 8.1487 2.9962 0.8936 34 1 8.1508 2.9950 -0.8864 35 1 11.4901 6.1833 0.0078 36 1 5.3673 -0.0262 0.0118 37 1 4.1297 -2.1477 0.0018 38 1 1.9385 -3.4437 1.7959 39 1 0.3881 -2.5444 1.7951 40 1 0.8631 -5.3000 0.9506 41 1 -0.6877 -4.4013 0.9494 42 1 0.1004 -4.8328 -1.4839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064084789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:09 Heat of formation + Delta-G solvation = -95.998230 kcal Electronic energy + Delta-G solvation = -25563.338896 eV Core-core repulsion = 21700.997375 eV Total energy + Delta-G solvation = -3862.341521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46786 -41.58792 -39.95190 -37.76040 -37.51052 -35.49172 -35.30171 -33.86797 -32.80180 -31.43595 -29.73155 -28.19112 -27.33533 -25.54781 -23.84681 -23.14513 -22.82832 -22.39706 -21.18667 -19.26472 -18.98255 -18.56057 -18.07267 -17.68169 -17.59364 -17.50155 -16.34053 -16.12612 -16.10735 -15.48229 -15.34544 -15.20156 -14.95745 -14.81840 -14.53268 -14.45697 -14.35361 -13.75701 -13.40808 -13.34934 -13.19044 -13.16311 -12.99641 -12.88038 -12.51718 -12.48522 -12.29960 -11.81547 -11.64937 -11.56806 -11.52311 -11.46658 -10.81327 -10.50111 -10.11879 -9.85789 -9.70339 -8.34358 -6.42700 -0.60275 0.19497 1.30316 1.38742 1.40060 1.44329 1.52781 1.59442 1.95453 2.34576 2.51361 2.97523 3.00418 3.50947 3.55589 3.66424 3.69812 4.04091 4.10685 4.15881 4.16993 4.25684 4.31319 4.37089 4.50579 4.61385 4.68810 4.69596 4.75248 4.88094 4.93411 4.95248 5.05640 5.10333 5.19755 5.28148 5.29001 5.41841 5.45872 5.51305 5.87116 6.15385 6.16818 6.38181 6.60295 6.63400 7.22188 7.47205 8.81664 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.002399 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.307023 B =11667.159157 C =12392.403780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.092 4.092 3 C -0.052 4.052 4 C -0.128 4.128 5 C 0.503 3.497 6 O -0.538 6.538 7 O -0.353 6.353 8 C 0.093 3.907 9 C -0.003 4.003 10 C -0.543 4.543 11 H 0.035 0.965 12 C 0.011 3.989 13 N -0.944 5.944 14 Si 0.955 3.045 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.242 1.242 18 C -0.057 4.057 19 C -0.116 4.116 20 C 0.193 3.807 21 N -0.593 5.593 22 C 0.085 3.915 23 C 0.096 3.904 24 N -0.729 5.729 25 C 0.693 3.307 26 O -0.634 6.634 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.271 0.729 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.796 -28.921 6.154 38.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 C -0.071 4.071 4 C -0.130 4.130 5 C 0.349 3.651 6 O -0.430 6.430 7 O -0.269 6.269 8 C 0.020 3.980 9 C -0.040 4.040 10 C -0.581 4.581 11 H 0.053 0.947 12 C -0.187 4.187 13 N -0.584 5.584 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.165 1.165 18 C -0.075 4.075 19 C -0.135 4.135 20 C 0.102 3.898 21 N -0.328 5.328 22 C -0.036 4.036 23 C -0.028 4.028 24 N -0.391 5.391 25 C 0.394 3.606 26 O -0.514 6.514 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -24.613 -28.228 5.640 37.873 hybrid contribution 0.707 0.337 -0.514 0.937 sum -23.906 -27.890 5.125 37.089 Atomic orbital electron populations 1.20722 0.88355 1.03063 1.03857 1.20244 0.98185 0.91083 0.99811 1.21102 0.91542 0.98962 0.95496 1.19225 0.93729 0.90305 1.09694 1.21600 0.81314 0.90049 0.72117 1.90803 1.70046 1.34708 1.47450 1.86508 1.20152 1.36932 1.83296 1.23022 0.93126 0.80531 1.01328 1.19470 0.89363 0.96556 0.98631 1.21105 0.92359 0.92151 1.52436 0.94669 1.25968 0.99040 1.00287 0.93428 1.70044 1.10374 1.26585 1.51353 0.85594 0.77791 0.79440 0.79484 1.18963 1.20578 1.16471 1.21485 1.01573 0.90164 0.94305 1.21470 0.92977 0.99043 1.00038 1.17200 0.89913 0.83636 0.99069 1.44117 1.59044 1.21646 1.08002 1.22934 1.01260 0.92313 0.87078 1.22700 1.03555 0.98465 0.78044 1.45075 1.60480 1.23230 1.10318 1.16151 0.78980 0.81775 0.83697 1.90976 1.64369 1.72909 1.23195 0.88387 0.90666 0.92188 0.83907 0.92439 0.92106 0.94310 0.94716 0.92054 0.82996 0.82948 0.87854 0.87812 0.87128 0.86994 0.71817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.76 71.23 0.70 -0.84 16 2 C -0.09 -1.88 5.89 -19.79 -0.12 -1.99 16 3 C -0.05 -1.28 9.23 22.51 0.21 -1.08 16 4 C -0.13 -3.63 5.87 -20.09 -0.12 -3.75 16 5 C 0.50 18.08 7.89 70.25 0.55 18.64 16 6 O -0.54 -22.08 16.13 19.80 0.32 -21.76 16 7 O -0.35 -13.53 9.46 -56.57 -0.54 -14.07 16 8 C 0.09 4.09 5.41 71.99 0.39 4.48 16 9 C 0.00 -0.13 4.42 29.85 0.13 0.00 16 10 C -0.54 -31.70 9.66 25.60 0.25 -31.45 16 11 H 0.03 2.26 7.99 -2.91 -0.02 2.24 16 12 C 0.01 0.63 5.47 84.65 0.46 1.09 16 13 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 14 Si 0.95 43.57 27.47 68.60 1.88 45.46 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 18 C -0.06 -1.34 9.60 22.51 0.22 -1.13 16 19 C -0.12 -2.32 9.95 22.35 0.22 -2.10 16 20 C 0.19 3.84 5.40 38.38 0.21 4.05 16 21 N -0.59 -9.03 2.04 -646.72 -1.32 -10.35 16 22 C 0.08 0.37 7.61 86.65 0.66 1.03 16 23 C 0.10 0.05 8.06 86.64 0.70 0.75 16 24 N -0.73 -6.79 6.37 -477.34 -3.04 -9.83 16 25 C 0.69 13.66 7.96 179.57 1.43 15.09 16 26 O -0.63 -19.96 17.65 -3.97 -0.07 -20.03 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.06 0.98 6.95 -2.38 -0.02 0.96 16 30 H 0.14 3.44 7.64 -2.91 -0.02 3.42 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.04 1.78 7.20 -2.38 -0.02 1.77 16 34 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.15 3.41 7.60 -2.91 -0.02 3.38 16 37 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 39 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.44 2.85 8.96 -92.71 -0.83 2.02 16 Total: -1.00 -82.97 361.38 3.59 -79.39 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.17 Total: 7.17 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.89 Total: 2.78 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -4.06 Total: -78.94 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.29 Total: -55.86 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.46 kcal Total: -82.97 3.59 -79.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064084789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.610 kcal (2) G-P(sol) polarization free energy of solvation -82.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds