Wall clock time and date at job start Tue Mar 31 2020 12:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47039 * 269.99807 * 3 2 1 5 5 H 1.48502 * 109.46869 * 30.00188 * 3 2 1 6 6 H 1.48506 * 109.47059 * 149.99787 * 3 2 1 7 7 C 1.38948 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99792 * 198.20880 * 7 2 1 9 9 N 1.37095 * 120.00277 * 18.21112 * 7 2 1 10 10 C 1.34774 * 119.99929 * 44.28650 * 9 7 2 11 11 O 1.21293 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.47332 * 180.02562 * 12 10 9 14 14 N 1.46504 * 109.46981 * 179.97438 * 13 12 10 15 15 C 1.34774 * 119.99781 * 179.97438 * 14 13 12 16 16 O 1.21782 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.41551 * 120.00160 * 179.97438 * 15 14 13 18 18 C 1.35624 * 120.00567 * 179.97438 * 17 15 14 19 19 C 1.41600 * 120.00269 * 180.02562 * 18 17 15 20 20 C 1.37957 * 126.10184 * 180.02562 * 19 18 17 21 21 C 1.40316 * 106.52384 * 179.72919 * 20 19 18 22 22 C 1.35153 * 107.20871 * 0.40095 * 21 20 19 23 23 O 1.34017 * 109.03248 * 359.58471 * 22 21 20 24 24 C 1.46494 * 120.00137 * 224.28209 * 9 7 2 25 25 C 1.53006 * 117.49948 * 3.23063 * 24 9 7 26 26 C 1.52993 * 117.50368 * 294.60677 * 24 9 7 27 27 H 0.97004 * 119.99705 * 354.93796 * 1 2 3 28 28 H 1.08998 * 109.47617 * 59.99520 * 12 10 9 29 29 H 1.09008 * 109.46985 * 299.99635 * 12 10 9 30 30 H 1.08996 * 109.46874 * 59.99919 * 13 12 10 31 31 H 1.08999 * 109.46804 * 299.99914 * 13 12 10 32 32 H 0.96999 * 120.00047 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.99975 * 0.02562 * 17 15 14 34 34 H 1.08002 * 119.99458 * 0.02562 * 18 17 15 35 35 H 1.07998 * 126.73339 * 0.02562 * 20 19 18 36 36 H 1.07999 * 126.38997 * 180.28775 * 21 20 19 37 37 H 1.08002 * 125.48169 * 179.85703 * 22 21 20 38 38 H 1.09000 * 115.55241 * 148.93041 * 24 9 7 39 39 H 1.08996 * 117.49523 * 359.97438 * 25 24 9 40 40 H 1.08992 * 117.50011 * 145.01435 * 25 24 9 41 41 H 1.08997 * 117.50490 * 214.97769 * 26 24 9 42 42 H 1.09005 * 117.49810 * 359.97282 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0482 -1.2267 0.2928 9 7 1.3748 -2.3611 -0.3700 10 6 0.5783 -2.3749 -1.4571 11 8 0.4220 -1.3631 -2.1074 12 6 -0.1191 -3.6473 -1.8641 13 6 -0.9537 -3.3920 -3.1208 14 7 -1.6311 -4.6292 -3.5168 15 6 -2.4276 -4.6431 -4.6039 16 8 -2.5844 -3.6271 -5.2569 17 6 -3.0818 -5.8385 -4.9869 18 6 -3.8836 -5.8524 -6.0806 19 6 -4.5384 -7.0482 -6.4633 20 6 -5.3773 -7.2044 -7.5473 21 6 -5.7884 -8.5460 -7.5437 22 6 -5.2060 -9.1398 -6.4784 23 8 -4.4528 -8.2384 -5.8333 24 6 1.5631 -3.5831 0.4157 25 6 2.4182 -3.4850 1.6807 26 6 2.9640 -4.1975 0.4416 27 1 -0.4850 0.8368 0.0741 28 1 -0.7709 -3.9790 -1.0559 29 1 0.6232 -4.4181 -2.0717 30 1 -0.3015 -3.0607 -3.9289 31 1 -1.6959 -2.6211 -2.9137 32 1 -1.5065 -5.4383 -2.9965 33 1 -2.9430 -6.7394 -4.4076 34 1 -4.0227 -4.9514 -6.6596 35 1 -5.6582 -6.4446 -8.2615 36 1 -6.4486 -9.0158 -8.2577 37 1 -5.3247 -10.1753 -6.1953 38 1 0.7137 -4.2660 0.4338 39 1 2.8410 -2.5113 1.9280 40 1 2.1314 -4.1032 2.5312 41 1 3.0364 -5.2845 0.4771 42 1 3.7456 -3.6927 -0.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:53 Heat of formation + Delta-G solvation = 2.511374 kcal Electronic energy + Delta-G solvation = -25153.025129 eV Core-core repulsion = 21294.955305 eV Total energy + Delta-G solvation = -3858.069824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87579 -39.73210 -38.59244 -36.25246 -34.94296 -34.23141 -33.37803 -32.82178 -31.15394 -30.35682 -28.96148 -25.66820 -24.37254 -22.60106 -22.17339 -21.70090 -21.13039 -20.86324 -19.81213 -18.97193 -17.86640 -17.03892 -16.47829 -16.41843 -16.06291 -15.63861 -15.38193 -14.84529 -14.69698 -14.32676 -14.00882 -13.95889 -13.45665 -13.35742 -13.14512 -12.83724 -12.62669 -12.47225 -12.32711 -11.95195 -11.27950 -11.08688 -11.04413 -10.87830 -10.86763 -10.82305 -10.47081 -10.25306 -10.16552 -9.99167 -9.89112 -9.75972 -8.84613 -8.70161 -8.24119 -8.03944 -7.03522 -6.10449 -3.86505 0.21524 1.82234 2.42441 2.60647 3.31686 3.38353 3.41469 3.43138 3.47268 4.09979 4.28069 4.42717 4.56971 4.62871 4.75359 4.85813 4.89849 5.12454 5.28233 5.31676 5.40959 5.42371 5.55127 5.62835 5.68874 5.69997 5.76530 5.77921 5.95996 5.98662 6.11860 6.13120 6.19842 6.42841 6.47423 6.50130 6.69931 6.71495 6.75494 6.91635 7.62522 7.66224 8.27635 8.36167 9.06268 9.15323 9.66301 10.28232 10.98781 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002247 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.420669 B =12456.809739 C =13483.370642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.350 4.350 8 H 0.077 0.923 9 N -0.428 5.428 10 C 0.486 3.514 11 O -0.530 6.530 12 C -0.145 4.145 13 C 0.137 3.863 14 N -0.723 5.723 15 C 0.542 3.458 16 O -0.545 6.545 17 C -0.195 4.195 18 C -0.001 4.001 19 C -0.004 4.004 20 C -0.168 4.168 21 C -0.218 4.218 22 C -0.024 4.024 23 O -0.166 6.166 24 C 0.075 3.925 25 C -0.174 4.174 26 C -0.208 4.208 27 H 0.265 0.735 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.398 0.602 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.206 0.794 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 -19.911 -8.001 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.095 0.905 9 N -0.149 5.149 10 C 0.273 3.727 11 O -0.407 6.407 12 C -0.186 4.186 13 C 0.014 3.986 14 N -0.373 5.373 15 C 0.331 3.669 16 O -0.425 6.425 17 C -0.216 4.216 18 C -0.020 4.020 19 C -0.053 4.053 20 C -0.187 4.187 21 C -0.237 4.237 22 C -0.093 4.093 23 O -0.061 6.061 24 C -0.031 4.031 25 C -0.212 4.212 26 C -0.247 4.247 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.231 0.769 33 H 0.148 0.852 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.223 0.777 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.454 -18.524 -8.586 22.098 hybrid contribution 0.268 0.107 0.385 0.481 sum -8.186 -18.417 -8.200 21.758 Atomic orbital electron populations 1.69815 1.06547 1.27481 1.42797 1.25251 0.94849 0.99421 0.94221 0.86204 0.79217 0.82165 0.78370 1.20263 1.21303 1.19940 1.18835 0.94479 0.83802 1.50548 0.90510 1.42750 1.44179 1.06822 1.21152 1.19508 0.83154 0.88436 0.81626 1.90566 1.62394 1.34556 1.53180 1.21775 0.99545 0.99654 0.97636 1.21100 0.96045 0.85020 0.96406 1.46053 1.48147 1.14238 1.28884 1.16959 0.79891 0.88890 0.81144 1.90868 1.63172 1.35161 1.53272 1.22167 1.00884 0.98920 0.99623 1.20676 0.92135 0.93489 0.95749 1.19937 1.03893 0.85547 0.95950 1.22386 0.99653 0.97694 0.98979 1.21795 1.05811 0.94891 1.01237 1.24315 0.95487 0.95124 0.94353 1.84106 1.55606 1.18195 1.48220 1.21690 0.92465 0.91613 0.97335 1.23060 1.04525 1.02505 0.91074 1.23315 0.99833 0.98434 1.03146 0.92539 0.90213 0.90220 0.90761 0.90418 0.76852 0.85237 0.82129 0.82579 0.82963 0.77741 0.88062 0.87477 0.89829 0.89840 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.78 11.74 55.50 0.65 -24.13 16 2 C 0.07 2.07 4.39 -17.47 -0.08 1.99 16 3 Si 0.91 22.12 29.59 -169.99 -5.03 17.09 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.35 -9.49 7.92 -14.93 -0.12 -9.61 16 8 H 0.08 2.02 7.26 -52.49 -0.38 1.64 16 9 N -0.43 -10.50 2.83 -107.74 -0.31 -10.80 16 10 C 0.49 12.06 6.97 -10.99 -0.08 11.98 16 11 O -0.53 -15.55 13.74 5.55 0.08 -15.47 16 12 C -0.14 -2.61 4.43 -27.88 -0.12 -2.74 16 13 C 0.14 2.52 4.96 -4.04 -0.02 2.50 16 14 N -0.72 -10.24 5.55 -63.24 -0.35 -10.59 16 15 C 0.54 8.22 7.56 -15.00 -0.11 8.11 16 16 O -0.54 -10.56 16.11 5.12 0.08 -10.48 16 17 C -0.20 -2.24 9.41 -39.25 -0.37 -2.61 16 18 C 0.00 -0.01 9.39 -39.23 -0.37 -0.38 16 19 C 0.00 -0.04 6.84 -38.40 -0.26 -0.30 16 20 C -0.17 -1.41 10.90 -38.90 -0.42 -1.83 16 21 C -0.22 -1.52 10.87 -39.90 -0.43 -1.95 16 22 C -0.02 -0.16 12.06 29.63 0.36 0.20 16 23 O -0.17 -1.57 10.18 4.69 0.05 -1.52 16 24 C 0.08 1.45 5.87 -67.93 -0.40 1.05 16 25 C -0.17 -3.06 9.80 -26.73 -0.26 -3.32 16 26 C -0.21 -3.43 10.36 -26.73 -0.28 -3.70 16 27 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 28 H 0.08 1.31 7.57 -51.93 -0.39 0.91 16 29 H 0.08 1.22 8.11 -51.92 -0.42 0.80 16 30 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 31 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 32 H 0.40 4.17 8.43 -40.82 -0.34 3.83 16 33 H 0.13 1.19 7.72 -52.49 -0.41 0.79 16 34 H 0.16 1.73 7.46 -52.49 -0.39 1.34 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 39 H 0.11 2.11 6.72 -51.93 -0.35 1.76 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -36.36 366.12 -7.84 -44.19 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.56 Total: 6.79 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.97 Total: -0.61 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.00 Total: -45.52 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: 0.21 Total: -27.47 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.36 -7.84 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.703 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds