Wall clock time and date at job start Tue Mar 31 2020 12:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47039 * 269.99807 * 3 2 1 5 5 H 1.48502 * 109.46869 * 30.00188 * 3 2 1 6 6 H 1.48506 * 109.47059 * 149.99787 * 3 2 1 7 7 C 1.38948 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99792 * 198.20880 * 7 2 1 9 9 N 1.37095 * 120.00277 * 18.21112 * 7 2 1 10 10 C 1.34774 * 119.99929 * 44.28650 * 9 7 2 11 11 O 1.21293 * 120.00274 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.47332 * 180.02562 * 12 10 9 14 14 N 1.46504 * 109.46981 * 179.97438 * 13 12 10 15 15 C 1.34774 * 119.99781 * 179.97438 * 14 13 12 16 16 O 1.21782 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.41551 * 120.00160 * 179.97438 * 15 14 13 18 18 C 1.35624 * 120.00567 * 179.97438 * 17 15 14 19 19 C 1.41600 * 120.00269 * 180.02562 * 18 17 15 20 20 C 1.37957 * 126.10184 * 180.02562 * 19 18 17 21 21 C 1.40316 * 106.52384 * 179.72919 * 20 19 18 22 22 C 1.35153 * 107.20871 * 0.40095 * 21 20 19 23 23 O 1.34017 * 109.03248 * 359.58471 * 22 21 20 24 24 C 1.46494 * 120.00137 * 224.28209 * 9 7 2 25 25 C 1.53006 * 117.49948 * 3.23063 * 24 9 7 26 26 C 1.52993 * 117.50368 * 294.60677 * 24 9 7 27 27 H 0.97004 * 119.99705 * 354.93796 * 1 2 3 28 28 H 1.08998 * 109.47617 * 59.99520 * 12 10 9 29 29 H 1.09008 * 109.46985 * 299.99635 * 12 10 9 30 30 H 1.08996 * 109.46874 * 59.99919 * 13 12 10 31 31 H 1.08999 * 109.46804 * 299.99914 * 13 12 10 32 32 H 0.96999 * 120.00047 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.99975 * 0.02562 * 17 15 14 34 34 H 1.08002 * 119.99458 * 0.02562 * 18 17 15 35 35 H 1.07998 * 126.73339 * 0.02562 * 20 19 18 36 36 H 1.07999 * 126.38997 * 180.28775 * 21 20 19 37 37 H 1.08002 * 125.48169 * 179.85703 * 22 21 20 38 38 H 1.09000 * 115.55241 * 148.93041 * 24 9 7 39 39 H 1.08996 * 117.49523 * 359.97438 * 25 24 9 40 40 H 1.08992 * 117.50011 * 145.01435 * 25 24 9 41 41 H 1.08997 * 117.50490 * 214.97769 * 26 24 9 42 42 H 1.09005 * 117.49810 * 359.97282 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0482 -1.2267 0.2928 9 7 1.3748 -2.3611 -0.3700 10 6 0.5783 -2.3749 -1.4571 11 8 0.4220 -1.3631 -2.1074 12 6 -0.1191 -3.6473 -1.8641 13 6 -0.9537 -3.3920 -3.1208 14 7 -1.6311 -4.6292 -3.5168 15 6 -2.4276 -4.6431 -4.6039 16 8 -2.5844 -3.6271 -5.2569 17 6 -3.0818 -5.8385 -4.9869 18 6 -3.8836 -5.8524 -6.0806 19 6 -4.5384 -7.0482 -6.4633 20 6 -5.3773 -7.2044 -7.5473 21 6 -5.7884 -8.5460 -7.5437 22 6 -5.2060 -9.1398 -6.4784 23 8 -4.4528 -8.2384 -5.8333 24 6 1.5631 -3.5831 0.4157 25 6 2.4182 -3.4850 1.6807 26 6 2.9640 -4.1975 0.4416 27 1 -0.4850 0.8368 0.0741 28 1 -0.7709 -3.9790 -1.0559 29 1 0.6232 -4.4181 -2.0717 30 1 -0.3015 -3.0607 -3.9289 31 1 -1.6959 -2.6211 -2.9137 32 1 -1.5065 -5.4383 -2.9965 33 1 -2.9430 -6.7394 -4.4076 34 1 -4.0227 -4.9514 -6.6596 35 1 -5.6582 -6.4446 -8.2615 36 1 -6.4486 -9.0158 -8.2577 37 1 -5.3247 -10.1753 -6.1953 38 1 0.7137 -4.2660 0.4338 39 1 2.8410 -2.5113 1.9280 40 1 2.1314 -4.1032 2.5312 41 1 3.0364 -5.2845 0.4771 42 1 3.7456 -3.6927 -0.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:52 Heat of formation + Delta-G solvation = -22.917742 kcal Electronic energy + Delta-G solvation = -25154.127818 eV Core-core repulsion = 21294.955305 eV Total energy + Delta-G solvation = -3859.172513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.48622 -41.00766 -40.33209 -37.86670 -36.31147 -35.17836 -34.76097 -33.98631 -32.96453 -31.84518 -29.83586 -27.38871 -25.64185 -23.92209 -23.04981 -22.81995 -22.71543 -21.83561 -21.10004 -20.38831 -18.75055 -18.22045 -17.90685 -17.75916 -17.07868 -17.02736 -16.75831 -16.47742 -15.97786 -15.67927 -15.63512 -15.32179 -14.88903 -14.35229 -14.22583 -13.91542 -13.80847 -13.68042 -13.53323 -13.10437 -13.02935 -12.89552 -12.81159 -12.56886 -12.30583 -12.16314 -12.04195 -11.70732 -11.63716 -11.21035 -11.16094 -10.84220 -10.72875 -10.17964 -9.97675 -8.96836 -8.94736 -8.20638 -5.98377 -0.59325 1.16763 1.34173 1.43448 1.47587 1.71625 2.02180 2.13809 2.28951 2.41782 2.41934 3.12642 3.17974 3.38903 3.71068 3.90743 3.99001 4.07694 4.11115 4.14369 4.16818 4.21189 4.28417 4.33098 4.50867 4.62937 4.68313 4.88679 4.94021 4.95410 4.97557 5.05239 5.09701 5.10845 5.22845 5.33167 5.40075 5.48206 5.52797 5.54627 6.09338 6.20408 6.55955 7.04013 7.20743 7.23308 7.71039 8.36582 8.87936 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002247 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.420669 B =12456.809739 C =13483.370642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.967 3.033 4 H -0.294 1.294 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.354 4.354 8 H 0.078 0.922 9 N -0.444 5.444 10 C 0.466 3.534 11 O -0.591 6.591 12 C -0.123 4.123 13 C 0.154 3.846 14 N -0.707 5.707 15 C 0.541 3.459 16 O -0.599 6.599 17 C -0.215 4.215 18 C 0.021 3.979 19 C -0.043 4.043 20 C -0.159 4.159 21 C -0.232 4.232 22 C -0.008 4.008 23 O -0.179 6.179 24 C 0.045 3.955 25 C -0.175 4.175 26 C -0.179 4.179 27 H 0.258 0.742 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.420 0.580 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.246 0.754 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -24.230 -7.614 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.482 4.482 8 H 0.095 0.905 9 N -0.164 5.164 10 C 0.255 3.745 11 O -0.473 6.473 12 C -0.163 4.163 13 C 0.029 3.971 14 N -0.358 5.358 15 C 0.334 3.666 16 O -0.483 6.483 17 C -0.236 4.236 18 C 0.001 3.999 19 C -0.091 4.091 20 C -0.179 4.179 21 C -0.251 4.251 22 C -0.076 4.076 23 O -0.075 6.075 24 C -0.060 4.060 25 C -0.212 4.212 26 C -0.218 4.218 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.258 0.742 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.262 0.738 38 H 0.151 0.849 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.574 -22.919 -8.132 25.786 hybrid contribution 0.259 1.246 0.150 1.282 sum -8.315 -21.672 -7.982 24.547 Atomic orbital electron populations 1.69924 1.07951 1.27515 1.45341 1.26055 0.95534 1.02635 0.94446 0.85356 0.79158 0.78806 0.77412 1.22075 1.20711 1.17567 1.19074 0.94719 0.85256 1.49105 0.90460 1.43000 1.43701 1.07917 1.21806 1.20613 0.82906 0.89889 0.81076 1.90527 1.64402 1.37299 1.55068 1.21586 1.00065 0.96962 0.97715 1.20604 0.94717 0.85896 0.95904 1.45748 1.47491 1.13599 1.29002 1.17537 0.79296 0.89363 0.80444 1.90841 1.65118 1.37352 1.55029 1.21957 1.02403 0.98073 1.01151 1.20706 0.90639 0.93854 0.94696 1.19825 1.06036 0.85759 0.97528 1.22795 0.98027 0.98938 0.98104 1.22188 1.06519 0.94234 1.02159 1.25248 0.93057 0.96105 0.93226 1.84098 1.56318 1.18293 1.48749 1.22072 0.95225 0.90370 0.98290 1.23116 1.03847 1.02074 0.92180 1.23330 0.96764 1.00591 1.01077 0.93277 0.87656 0.86360 0.93512 0.94469 0.74217 0.82614 0.82970 0.81339 0.80472 0.73789 0.84901 0.90421 0.86389 0.85395 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.11 11.74 21.66 0.25 -53.85 16 2 C 0.02 1.12 4.39 84.93 0.37 1.50 16 3 Si 0.97 46.88 29.59 68.60 2.03 48.91 16 4 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.35 -19.57 7.92 84.04 0.67 -18.90 16 8 H 0.08 4.14 7.26 -2.91 -0.02 4.12 16 9 N -0.44 -21.81 2.83 -613.16 -1.74 -23.55 16 10 C 0.47 23.60 6.97 87.66 0.61 24.21 16 11 O -0.59 -36.58 13.74 -3.07 -0.04 -36.62 16 12 C -0.12 -4.31 4.43 29.85 0.13 -4.18 16 13 C 0.15 5.84 4.96 86.38 0.43 6.27 16 14 N -0.71 -19.80 5.55 -472.17 -2.62 -22.41 16 15 C 0.54 16.82 7.56 85.06 0.64 17.46 16 16 O -0.60 -24.68 16.11 -4.61 -0.07 -24.76 16 17 C -0.22 -4.86 9.41 22.48 0.21 -4.64 16 18 C 0.02 0.45 9.39 22.49 0.21 0.67 16 19 C -0.04 -0.79 6.84 23.03 0.16 -0.64 16 20 C -0.16 -2.36 10.90 22.71 0.25 -2.12 16 21 C -0.23 -2.47 10.87 22.06 0.24 -2.23 16 22 C -0.01 -0.07 12.06 67.11 0.81 0.73 16 23 O -0.18 -2.94 10.18 -6.13 -0.06 -3.00 16 24 C 0.05 1.63 5.87 44.99 0.26 1.89 16 25 C -0.17 -5.68 9.80 30.60 0.30 -5.38 16 26 C -0.18 -5.26 10.36 30.59 0.32 -4.94 16 27 H 0.26 15.55 8.32 -92.71 -0.77 14.78 16 28 H 0.11 3.19 7.57 -2.39 -0.02 3.17 16 29 H 0.12 3.25 8.11 -2.38 -0.02 3.23 16 30 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.42 7.87 8.43 -92.71 -0.78 7.09 16 33 H 0.16 2.58 7.72 -2.91 -0.02 2.56 16 34 H 0.15 3.44 7.46 -2.91 -0.02 3.42 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.25 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.13 3.90 6.96 -2.39 -0.02 3.89 16 39 H 0.08 3.01 6.72 -2.39 -0.02 2.99 16 40 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -86.53 366.12 3.63 -82.90 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.27 Total: 22.67 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.61 Total: 9.70 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.10 Total: -99.81 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -0.18 Total: -64.37 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -86.53 3.63 -82.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.985 kcal (2) G-P(sol) polarization free energy of solvation -86.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds