Wall clock time and date at job start Tue Mar 31 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86795 * 120.00029 * 2 1 4 4 H 1.48503 * 109.46982 * 270.00044 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00137 * 3 2 1 6 6 H 1.48499 * 109.46878 * 150.00156 * 3 2 1 7 7 C 1.38627 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 0.02562 * 7 2 1 9 9 O 1.34819 * 120.00198 * 179.97438 * 7 2 1 10 10 C 1.35776 * 117.00078 * 185.41353 * 9 7 2 11 11 C 1.38907 * 119.99892 * 5.91942 * 10 9 7 12 12 C 1.38006 * 119.99961 * 180.02562 * 11 10 9 13 13 C 1.38927 * 119.99505 * 0.02562 * 12 11 10 14 14 N 1.39992 * 119.99367 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99807 * 146.40620 * 14 13 12 16 16 O 1.21293 * 119.99947 * 354.62863 * 15 14 13 17 17 C 1.50700 * 120.00356 * 174.89885 * 15 14 13 18 18 C 1.53000 * 109.47421 * 180.02562 * 17 15 14 19 19 N 1.46498 * 109.47213 * 180.02562 * 18 17 15 20 20 C 1.46759 * 124.35007 * 269.72859 * 19 18 17 21 21 C 1.54662 * 105.38344 * 162.85560 * 20 19 18 22 22 C 1.54625 * 101.68355 * 25.76159 * 21 20 19 23 23 C 1.34423 * 124.35073 * 90.02254 * 19 18 17 24 24 O 1.21287 * 124.94051 * 0.43027 * 23 19 18 25 25 C 1.38915 * 119.99856 * 0.25290 * 13 12 11 26 26 C 1.37999 * 119.99707 * 359.49198 * 25 13 12 27 27 H 0.96999 * 119.99343 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99894 * 0.02562 * 11 10 9 29 29 H 1.07991 * 119.99913 * 179.97438 * 12 11 10 30 30 H 0.96999 * 120.00549 * 326.40132 * 14 13 12 31 31 H 1.08996 * 109.47581 * 300.00822 * 17 15 14 32 32 H 1.09005 * 109.46519 * 60.00433 * 17 15 14 33 33 H 1.08997 * 109.47228 * 300.00122 * 18 17 15 34 34 H 1.08997 * 109.47171 * 60.00436 * 18 17 15 35 35 H 1.09000 * 110.24386 * 281.98053 * 20 19 18 36 36 H 1.08997 * 110.24817 * 43.98133 * 20 19 18 37 37 H 1.09004 * 111.18961 * 267.59547 * 21 20 19 38 38 H 1.08999 * 110.82241 * 143.77776 * 21 20 19 39 39 H 1.09007 * 110.48737 * 216.30496 * 22 21 20 40 40 H 1.09006 * 110.59896 * 93.72979 * 22 21 20 41 41 H 1.08000 * 119.99683 * 179.73931 * 25 13 12 42 42 H 1.08007 * 119.99869 * 180.25236 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4400 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4052 -0.1135 11 6 3.2223 -3.5504 -0.3456 12 6 3.8487 -4.7748 -0.4605 13 6 5.2303 -4.8619 -0.3435 14 7 5.8656 -6.1039 -0.4596 15 6 7.0927 -6.1842 -1.0111 16 8 7.6059 -5.1975 -1.4949 17 6 7.8246 -7.5014 -1.0322 18 6 9.1847 -7.3183 -1.7087 19 7 9.8959 -8.5989 -1.7298 20 6 10.8014 -9.0607 -0.6711 21 6 10.9535 -10.5832 -0.8966 22 6 10.6646 -10.7059 -2.4107 23 6 9.8075 -9.4994 -2.7238 24 8 9.1382 -9.3641 -3.7262 25 6 5.9807 -3.7173 -0.1057 26 6 5.3547 -2.4923 0.0039 27 1 -0.4849 0.8401 -0.0004 28 1 2.1483 -3.4827 -0.4361 29 1 3.2648 -5.6652 -0.6406 30 1 5.4227 -6.9067 -0.1430 31 1 7.9716 -7.8518 -0.0106 32 1 7.2382 -8.2340 -1.5868 33 1 9.0380 -6.9678 -2.7303 34 1 9.7708 -6.5859 -1.1539 35 1 11.7682 -8.5652 -0.7590 36 1 10.3654 -8.8674 0.3090 37 1 10.2222 -11.1429 -0.3134 38 1 11.9673 -10.9098 -0.6651 39 1 10.1199 -11.6262 -2.6218 40 1 11.5924 -10.6735 -2.9820 41 1 7.0543 -3.7856 -0.0105 42 1 5.9385 -1.6018 0.1848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067963997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:47 Heat of formation + Delta-G solvation = -65.779597 kcal Electronic energy + Delta-G solvation = -25105.977027 eV Core-core repulsion = 21244.945884 eV Total energy + Delta-G solvation = -3861.031143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82340 -40.14980 -38.85308 -36.85908 -36.64386 -34.13159 -34.07194 -32.33878 -30.54740 -30.33347 -28.08561 -27.99110 -25.44791 -24.45717 -22.41762 -22.35355 -21.44818 -20.15395 -19.67861 -18.03180 -17.61694 -17.44228 -17.00195 -16.81888 -16.16133 -16.04072 -15.32629 -14.76878 -14.51195 -14.17868 -14.09157 -13.86449 -13.78139 -13.73852 -13.50091 -13.28107 -12.92727 -12.80057 -12.48278 -12.34172 -12.24766 -11.99823 -11.84734 -11.68584 -11.54135 -11.41479 -10.95297 -10.76522 -10.18346 -10.14056 -9.91933 -9.69459 -9.34480 -9.13022 -8.78403 -8.31853 -7.07487 -6.42622 -4.08307 1.94659 2.08443 2.22017 2.51929 2.75796 3.22611 3.26716 3.30942 3.41434 3.90568 3.97918 4.23871 4.30609 4.44869 4.52571 4.54552 4.69568 4.75955 4.88578 4.98545 5.02730 5.08162 5.16449 5.19622 5.27873 5.42330 5.45800 5.47641 5.64156 5.67756 6.03436 6.09208 6.12876 6.16306 6.63713 6.72450 6.73754 6.89073 7.04741 7.21166 7.54936 7.59493 7.76762 7.81178 8.00992 8.25145 8.92737 9.55065 10.64909 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.002006 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.583093 B =13956.486567 C =14157.448973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.216 6.216 10 C 0.152 3.848 11 C -0.205 4.205 12 C -0.092 4.092 13 C 0.045 3.955 14 N -0.661 5.661 15 C 0.511 3.489 16 O -0.527 6.527 17 C -0.155 4.155 18 C 0.141 3.859 19 N -0.621 5.621 20 C 0.099 3.901 21 C -0.132 4.132 22 C -0.156 4.156 23 C 0.513 3.487 24 O -0.528 6.528 25 C -0.070 4.070 26 C -0.177 4.177 27 H 0.279 0.721 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.403 0.597 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.139 -21.935 2.102 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.121 6.121 10 C 0.099 3.901 11 C -0.225 4.225 12 C -0.112 4.112 13 C -0.048 4.048 14 N -0.306 5.306 15 C 0.297 3.703 16 O -0.403 6.403 17 C -0.197 4.197 18 C 0.019 3.981 19 N -0.356 5.356 20 C -0.024 4.024 21 C -0.170 4.170 22 C -0.196 4.196 23 C 0.301 3.699 24 O -0.404 6.404 25 C -0.090 4.090 26 C -0.197 4.197 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.131 0.869 30 H 0.238 0.762 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 21.027 -20.729 1.254 29.553 hybrid contribution -0.233 0.188 0.213 0.368 sum 20.794 -20.541 1.467 29.265 Atomic orbital electron populations 1.69658 1.05554 1.28510 1.47957 1.24474 0.95049 0.98890 0.95649 0.86172 0.80333 0.81359 0.79011 1.19876 1.20784 1.18303 1.20751 0.76909 0.96608 1.52166 0.87660 1.83599 1.22575 1.25599 1.80305 1.19157 0.91594 0.85678 0.93645 1.21108 1.01236 0.91566 1.08572 1.20545 0.92259 0.97546 1.00867 1.17303 0.91482 0.85027 1.10969 1.43281 1.17782 1.08901 1.60620 1.20455 0.81735 0.90497 0.77595 1.90740 1.66892 1.38204 1.44432 1.22003 0.97790 0.96273 1.03615 1.21094 0.90557 0.83155 1.03292 1.48361 1.45937 1.19384 1.21878 1.22170 0.94035 0.94711 0.91493 1.22635 1.03725 0.95253 0.95374 1.22344 1.01526 0.98182 0.97577 1.20995 0.81465 0.85062 0.82404 1.90765 1.42608 1.79322 1.27735 1.20567 0.99269 0.90752 0.98372 1.20115 0.91833 0.97686 1.10022 0.91048 0.84452 0.86852 0.76229 0.88604 0.88511 0.88891 0.89210 0.90772 0.90148 0.89837 0.89084 0.88017 0.87787 0.85700 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.96 55.48 0.77 -24.54 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.78 28.62 -169.99 -4.86 16.92 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -10.91 9.90 30.88 0.31 -10.61 16 8 H 0.11 2.99 5.52 -52.49 -0.29 2.70 16 9 O -0.22 -5.71 8.58 0.00 0.00 -5.71 16 10 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 11 C -0.21 -4.37 9.13 -39.42 -0.36 -4.73 16 12 C -0.09 -1.63 9.96 -39.41 -0.39 -2.02 16 13 C 0.04 0.76 6.27 -83.62 -0.52 0.24 16 14 N -0.66 -8.50 5.34 -9.82 -0.05 -8.55 16 15 C 0.51 6.61 7.56 -10.99 -0.08 6.53 16 16 O -0.53 -8.90 13.71 5.55 0.08 -8.82 16 17 C -0.16 -1.36 6.03 -27.88 -0.17 -1.53 16 18 C 0.14 1.33 5.22 -4.04 -0.02 1.30 16 19 N -0.62 -4.84 2.93 -172.31 -0.51 -5.35 16 20 C 0.10 0.40 7.36 -3.03 -0.02 0.37 16 21 C -0.13 -0.34 7.19 -25.00 -0.18 -0.52 16 22 C -0.16 -0.78 6.86 -26.75 -0.18 -0.97 16 23 C 0.51 4.95 8.02 -10.86 -0.09 4.86 16 24 O -0.53 -7.66 17.59 5.55 0.10 -7.56 16 25 C -0.07 -1.29 8.65 -39.42 -0.34 -1.63 16 26 C -0.18 -3.64 9.98 -39.42 -0.39 -4.03 16 27 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.14 3.04 5.71 -52.49 -0.30 2.74 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.40 3.72 8.82 -40.82 -0.36 3.36 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.13 7.88 -51.93 -0.41 0.72 16 34 H 0.09 0.78 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.13 2.21 6.45 -52.49 -0.34 1.87 16 42 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -35.09 358.35 -7.36 -42.45 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.48 Total: 3.58 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.81 Total: -7.81 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.22 Total: -38.44 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.17 Total: -22.10 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.09 -7.36 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067963997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.331 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds