Wall clock time and date at job start Tue Mar 31 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86795 * 120.00029 * 2 1 4 4 H 1.48503 * 109.46982 * 270.00044 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00137 * 3 2 1 6 6 H 1.48499 * 109.46878 * 150.00156 * 3 2 1 7 7 C 1.38627 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 0.02562 * 7 2 1 9 9 O 1.34819 * 120.00198 * 179.97438 * 7 2 1 10 10 C 1.35776 * 117.00078 * 185.41353 * 9 7 2 11 11 C 1.38907 * 119.99892 * 5.91942 * 10 9 7 12 12 C 1.38006 * 119.99961 * 180.02562 * 11 10 9 13 13 C 1.38927 * 119.99505 * 0.02562 * 12 11 10 14 14 N 1.39992 * 119.99367 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99807 * 146.40620 * 14 13 12 16 16 O 1.21293 * 119.99947 * 354.62863 * 15 14 13 17 17 C 1.50700 * 120.00356 * 174.89885 * 15 14 13 18 18 C 1.53000 * 109.47421 * 180.02562 * 17 15 14 19 19 N 1.46498 * 109.47213 * 180.02562 * 18 17 15 20 20 C 1.46759 * 124.35007 * 269.72859 * 19 18 17 21 21 C 1.54662 * 105.38344 * 162.85560 * 20 19 18 22 22 C 1.54625 * 101.68355 * 25.76159 * 21 20 19 23 23 C 1.34423 * 124.35073 * 90.02254 * 19 18 17 24 24 O 1.21287 * 124.94051 * 0.43027 * 23 19 18 25 25 C 1.38915 * 119.99856 * 0.25290 * 13 12 11 26 26 C 1.37999 * 119.99707 * 359.49198 * 25 13 12 27 27 H 0.96999 * 119.99343 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99894 * 0.02562 * 11 10 9 29 29 H 1.07991 * 119.99913 * 179.97438 * 12 11 10 30 30 H 0.96999 * 120.00549 * 326.40132 * 14 13 12 31 31 H 1.08996 * 109.47581 * 300.00822 * 17 15 14 32 32 H 1.09005 * 109.46519 * 60.00433 * 17 15 14 33 33 H 1.08997 * 109.47228 * 300.00122 * 18 17 15 34 34 H 1.08997 * 109.47171 * 60.00436 * 18 17 15 35 35 H 1.09000 * 110.24386 * 281.98053 * 20 19 18 36 36 H 1.08997 * 110.24817 * 43.98133 * 20 19 18 37 37 H 1.09004 * 111.18961 * 267.59547 * 21 20 19 38 38 H 1.08999 * 110.82241 * 143.77776 * 21 20 19 39 39 H 1.09007 * 110.48737 * 216.30496 * 22 21 20 40 40 H 1.09006 * 110.59896 * 93.72979 * 22 21 20 41 41 H 1.08000 * 119.99683 * 179.73931 * 25 13 12 42 42 H 1.08007 * 119.99869 * 180.25236 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5473 1.4400 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4052 -0.1135 11 6 3.2223 -3.5504 -0.3456 12 6 3.8487 -4.7748 -0.4605 13 6 5.2303 -4.8619 -0.3435 14 7 5.8656 -6.1039 -0.4596 15 6 7.0927 -6.1842 -1.0111 16 8 7.6059 -5.1975 -1.4949 17 6 7.8246 -7.5014 -1.0322 18 6 9.1847 -7.3183 -1.7087 19 7 9.8959 -8.5989 -1.7298 20 6 10.8014 -9.0607 -0.6711 21 6 10.9535 -10.5832 -0.8966 22 6 10.6646 -10.7059 -2.4107 23 6 9.8075 -9.4994 -2.7238 24 8 9.1382 -9.3641 -3.7262 25 6 5.9807 -3.7173 -0.1057 26 6 5.3547 -2.4923 0.0039 27 1 -0.4849 0.8401 -0.0004 28 1 2.1483 -3.4827 -0.4361 29 1 3.2648 -5.6652 -0.6406 30 1 5.4227 -6.9067 -0.1430 31 1 7.9716 -7.8518 -0.0106 32 1 7.2382 -8.2340 -1.5868 33 1 9.0380 -6.9678 -2.7303 34 1 9.7708 -6.5859 -1.1539 35 1 11.7682 -8.5652 -0.7590 36 1 10.3654 -8.8674 0.3090 37 1 10.2222 -11.1429 -0.3134 38 1 11.9673 -10.9098 -0.6651 39 1 10.1199 -11.6262 -2.6218 40 1 11.5924 -10.6735 -2.9820 41 1 7.0543 -3.7856 -0.0105 42 1 5.9385 -1.6018 0.1848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067963997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:47 Heat of formation + Delta-G solvation = -90.139145 kcal Electronic energy + Delta-G solvation = -25107.033336 eV Core-core repulsion = 21244.945884 eV Total energy + Delta-G solvation = -3862.087452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69141 -41.22877 -40.45308 -38.33719 -37.47394 -35.45258 -34.78337 -34.35791 -31.93516 -31.32528 -29.51480 -28.41907 -27.25788 -25.45465 -23.99493 -22.92143 -22.65773 -21.44738 -20.33624 -19.82734 -19.19225 -18.63730 -18.13320 -17.49948 -17.12449 -16.89817 -16.55666 -16.14949 -15.85589 -15.66641 -15.43831 -15.19370 -14.75006 -14.60911 -14.46552 -14.24075 -14.20799 -14.09875 -13.90240 -13.51238 -13.34450 -13.25729 -13.09370 -12.77689 -12.52294 -12.33506 -12.13142 -11.98885 -11.80306 -11.48189 -11.21626 -10.97986 -10.84471 -10.65779 -9.90176 -9.77051 -8.69289 -8.50109 -6.21136 0.43525 0.47816 1.31477 1.34686 1.51508 1.51921 1.59319 1.82716 2.28117 2.31298 2.74782 3.07723 3.09903 3.45892 3.64361 3.69948 3.90454 3.99324 4.03062 4.08433 4.11425 4.27742 4.43719 4.44370 4.57853 4.64947 4.70157 4.71517 4.77248 4.91238 4.93642 5.05441 5.13072 5.15110 5.27614 5.35465 5.47841 5.51986 5.54661 5.74026 5.88327 6.14427 6.16942 6.47852 6.84442 7.12046 7.17581 7.58423 8.61174 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040302 B = 0.002006 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.583093 B =13956.486567 C =14157.448973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.397 4.397 8 H 0.085 0.915 9 O -0.244 6.244 10 C 0.112 3.888 11 C -0.214 4.214 12 C -0.088 4.088 13 C 0.072 3.928 14 N -0.651 5.651 15 C 0.512 3.488 16 O -0.566 6.566 17 C -0.138 4.138 18 C 0.140 3.860 19 N -0.618 5.618 20 C 0.091 3.909 21 C -0.119 4.119 22 C -0.151 4.151 23 C 0.498 3.502 24 O -0.591 6.591 25 C -0.074 4.074 26 C -0.175 4.175 27 H 0.284 0.716 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.426 0.574 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.074 -24.626 3.454 34.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.473 4.473 8 H 0.103 0.897 9 O -0.152 6.152 10 C 0.063 3.937 11 C -0.234 4.234 12 C -0.108 4.108 13 C -0.022 4.022 14 N -0.298 5.298 15 C 0.301 3.699 16 O -0.444 6.444 17 C -0.178 4.178 18 C 0.017 3.983 19 N -0.350 5.350 20 C -0.030 4.030 21 C -0.156 4.156 22 C -0.190 4.190 23 C 0.287 3.713 24 O -0.472 6.472 25 C -0.094 4.094 26 C -0.195 4.195 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.264 0.736 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.011 -23.501 2.656 33.703 hybrid contribution -0.895 0.698 -0.235 1.159 sum 23.116 -22.803 2.420 32.560 Atomic orbital electron populations 1.69734 1.06751 1.29538 1.50126 1.25246 0.95888 1.02055 0.95641 0.85257 0.78892 0.77697 0.79136 1.19446 1.19058 1.18724 1.20712 0.77996 0.96206 1.52425 0.89746 1.83539 1.21344 1.27238 1.83042 1.19616 0.92785 0.85502 0.95831 1.21153 1.00573 0.92704 1.08966 1.20819 0.92913 0.97426 0.99630 1.17441 0.91324 0.86453 1.06979 1.43262 1.17857 1.08155 1.60555 1.21201 0.81191 0.91482 0.76044 1.90739 1.67705 1.40079 1.45918 1.21928 0.96525 0.93491 1.05890 1.20949 0.91589 0.84365 1.01379 1.48494 1.45686 1.18310 1.22542 1.22513 0.93795 0.95751 0.90968 1.22680 1.05599 0.94180 0.93168 1.22385 1.00940 0.95959 0.99762 1.21894 0.81134 0.86542 0.81692 1.90723 1.45430 1.80787 1.30245 1.20780 1.00011 0.90517 0.98083 1.20326 0.90840 0.99079 1.09241 0.90597 0.86202 0.83117 0.73560 0.84612 0.88045 0.92614 0.88348 0.89713 0.88180 0.88781 0.86542 0.87461 0.86685 0.84353 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 13.96 21.61 0.30 -54.66 16 2 C 0.01 0.60 5.49 84.82 0.47 1.06 16 3 Si 0.97 46.00 28.62 68.60 1.96 47.97 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.40 -23.39 9.90 67.91 0.67 -22.71 16 8 H 0.09 5.14 5.52 -2.91 -0.02 5.12 16 9 O -0.24 -13.42 8.58 -22.91 -0.20 -13.62 16 10 C 0.11 5.34 6.65 22.59 0.15 5.49 16 11 C -0.21 -9.28 9.13 22.37 0.20 -9.08 16 12 C -0.09 -2.95 9.96 22.38 0.22 -2.73 16 13 C 0.07 2.27 6.27 38.16 0.24 2.51 16 14 N -0.65 -14.38 5.34 -303.37 -1.62 -16.01 16 15 C 0.51 11.77 7.56 87.66 0.66 12.44 16 16 O -0.57 -18.15 13.71 -3.07 -0.04 -18.19 16 17 C -0.14 -1.94 6.03 29.85 0.18 -1.76 16 18 C 0.14 2.39 5.22 86.38 0.45 2.85 16 19 N -0.62 -8.20 2.93 -817.65 -2.40 -10.60 16 20 C 0.09 0.36 7.36 86.90 0.64 1.00 16 21 C -0.12 -0.10 7.19 31.71 0.23 0.13 16 22 C -0.15 -1.12 6.86 30.58 0.21 -0.91 16 23 C 0.50 9.03 8.02 87.89 0.70 9.73 16 24 O -0.59 -17.49 17.59 -3.05 -0.05 -17.55 16 25 C -0.07 -2.62 8.65 22.38 0.19 -2.42 16 26 C -0.18 -7.18 9.98 22.37 0.22 -6.95 16 27 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.12 5.60 5.71 -2.91 -0.02 5.58 16 29 H 0.15 3.91 8.06 -2.92 -0.02 3.89 16 30 H 0.43 5.88 8.82 -92.71 -0.82 5.06 16 31 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.06 1.38 7.88 -2.39 -0.02 1.36 16 34 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.14 4.59 6.45 -2.91 -0.02 4.57 16 42 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -82.14 358.35 3.64 -78.49 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.24 Total: 15.54 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.45 Total: -11.37 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.72 Total: -81.27 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -0.29 Total: -49.35 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.96 Total: 47.97 kcal Total: -82.14 3.64 -78.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067963997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -82.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds