Wall clock time and date at job start Tue Mar 31 2020 12:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47282 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47260 * 30.00056 * 3 2 1 6 6 H 1.48499 * 109.46887 * 149.99583 * 3 2 1 7 7 C 1.38648 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99877 * 174.96487 * 9 7 2 11 11 C 1.38945 * 120.03420 * 5.36179 * 10 9 7 12 12 C 1.38128 * 120.07369 * 179.97438 * 11 10 9 13 13 C 1.38204 * 120.13140 * 359.72301 * 12 11 10 14 14 C 1.38916 * 120.07059 * 0.55096 * 13 12 11 15 15 N 1.39922 * 120.04112 * 179.71999 * 14 13 12 16 16 C 1.34770 * 120.00468 * 214.85586 * 15 14 13 17 17 O 1.21283 * 120.00047 * 355.48433 * 16 15 14 18 18 C 1.50699 * 120.00290 * 175.49093 * 16 15 14 19 19 C 1.53000 * 109.47529 * 179.97438 * 18 16 15 20 20 N 1.46494 * 109.47345 * 179.97438 * 19 18 16 21 21 C 1.46767 * 124.35232 * 269.72434 * 20 19 18 22 22 C 1.54654 * 105.38283 * 162.85515 * 21 20 19 23 23 C 1.54626 * 101.68792 * 25.76834 * 22 21 20 24 24 C 1.34420 * 124.35108 * 90.02855 * 20 19 18 25 25 O 1.21278 * 124.93838 * 0.42470 * 24 20 19 26 26 C 1.38728 * 120.03202 * 185.34281 * 10 9 7 27 27 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.96761 * 359.95519 * 11 10 9 29 29 H 1.07993 * 119.93384 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.96324 * 180.30397 * 13 12 11 31 31 H 0.97006 * 120.00002 * 34.84810 * 15 14 13 32 32 H 1.08997 * 109.47476 * 59.99517 * 18 16 15 33 33 H 1.09002 * 109.46982 * 299.99807 * 18 16 15 34 34 H 1.09002 * 109.47287 * 300.00178 * 19 18 16 35 35 H 1.09008 * 109.47027 * 59.99876 * 19 18 16 36 36 H 1.09000 * 110.24726 * 281.98800 * 21 20 19 37 37 H 1.09004 * 110.24199 * 43.98368 * 21 20 19 38 38 H 1.09002 * 111.19341 * 267.59183 * 22 21 20 39 39 H 1.09003 * 110.82291 * 143.78110 * 22 21 20 40 40 H 1.08990 * 110.48882 * 216.30731 * 23 22 21 41 41 H 1.09004 * 110.59631 * 93.71769 * 23 22 21 42 42 H 1.08005 * 120.06689 * 0.04098 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0700 -3.5047 -0.1051 11 6 3.4578 -3.4383 -0.0947 12 6 4.2069 -4.5939 -0.2016 13 6 3.5788 -5.8199 -0.3134 14 6 2.1916 -5.8924 -0.3301 15 7 1.5565 -7.1334 -0.4493 16 6 0.4020 -7.2364 -1.1370 17 8 -0.1291 -6.2414 -1.5828 18 6 -0.2291 -8.5879 -1.3519 19 6 -1.5211 -8.4256 -2.1553 20 7 -2.1342 -9.7394 -2.3648 21 6 -1.8605 -10.6070 -3.5165 22 6 -2.3582 -12.0108 -3.1002 23 6 -3.4385 -11.6615 -2.0505 24 6 -3.0242 -10.3029 -1.5298 25 8 -3.4356 -9.7957 -0.5079 26 6 1.4366 -4.7332 -0.2231 27 1 -0.4850 0.8401 -0.0004 28 1 3.9516 -2.4821 -0.0033 29 1 5.2854 -4.5398 -0.1928 30 1 4.1672 -6.7223 -0.3919 31 1 1.9471 -7.9198 -0.0369 32 1 -0.4563 -9.0405 -0.3868 33 1 0.4619 -9.2285 -1.9000 34 1 -2.2119 -7.7851 -1.6070 35 1 -1.2942 -7.9728 -3.1206 36 1 -2.4057 -10.2547 -4.3922 37 1 -0.7905 -10.6333 -3.7230 38 1 -1.5553 -12.5971 -2.6534 39 1 -2.7953 -12.5348 -3.9503 40 1 -3.4386 -12.3952 -1.2446 41 1 -4.4226 -11.6077 -2.5163 42 1 0.3579 -4.7873 -0.2318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067973405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:03 Heat of formation + Delta-G solvation = -64.967399 kcal Electronic energy + Delta-G solvation = -25400.094529 eV Core-core repulsion = 21539.098606 eV Total energy + Delta-G solvation = -3860.995923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.73282 -40.07377 -38.60404 -36.72953 -36.50764 -34.10809 -34.03167 -32.22172 -30.61665 -29.32996 -28.30340 -27.90819 -25.34285 -24.64672 -22.37002 -22.13522 -21.32841 -20.15283 -19.57775 -18.22098 -17.63123 -17.09153 -16.90257 -16.21723 -15.96288 -15.61074 -15.21935 -15.04352 -14.42316 -14.29499 -14.10067 -13.96271 -13.70587 -13.58574 -13.42505 -13.20949 -12.87689 -12.71739 -12.46770 -12.35320 -11.92027 -11.72838 -11.51735 -11.45537 -11.31568 -11.20118 -10.99543 -10.76900 -10.43870 -10.04574 -9.82456 -9.68804 -9.21443 -9.00786 -8.79180 -7.69450 -7.17249 -6.39350 -3.98766 2.00423 2.31763 2.35425 2.61165 2.84363 3.15887 3.17174 3.21635 3.33732 3.99109 4.01026 4.05797 4.38124 4.55457 4.62962 4.64137 4.78194 4.84821 5.06976 5.11246 5.14831 5.24347 5.26907 5.35053 5.39715 5.51671 5.54260 5.63390 5.77252 5.83842 6.10670 6.22930 6.23437 6.40223 6.70653 6.84167 6.88115 7.05164 7.09886 7.36142 7.49761 7.68343 7.80805 7.91131 8.05228 8.33449 9.05270 9.76644 10.78529 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.002422 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.973241 B =11557.866633 C =12515.153889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.166 3.834 11 C -0.245 4.245 12 C -0.059 4.059 13 C -0.236 4.236 14 C 0.173 3.827 15 N -0.669 5.669 16 C 0.509 3.491 17 O -0.509 6.509 18 C -0.154 4.154 19 C 0.139 3.861 20 N -0.621 5.621 21 C 0.099 3.901 22 C -0.132 4.132 23 C -0.156 4.156 24 C 0.513 3.487 25 O -0.527 6.527 26 C -0.187 4.187 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.406 0.594 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -24.840 -6.848 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.111 3.889 11 C -0.265 4.265 12 C -0.078 4.078 13 C -0.257 4.257 14 C 0.080 3.920 15 N -0.314 5.314 16 C 0.296 3.704 17 O -0.383 6.383 18 C -0.195 4.195 19 C 0.017 3.983 20 N -0.355 5.355 21 C -0.024 4.024 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.300 3.700 25 O -0.403 6.403 26 C -0.208 4.208 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.558 -23.584 -6.624 24.503 hybrid contribution 0.901 0.362 0.134 0.980 sum 0.343 -23.222 -6.490 24.114 Atomic orbital electron populations 1.70060 1.05968 1.27643 1.45803 1.25311 0.95840 0.98847 0.96595 0.85703 0.78876 0.80086 0.78684 1.19886 1.20279 1.19199 1.21345 0.91807 0.80799 1.52881 0.88992 1.83997 1.34240 1.11338 1.78028 1.19147 0.90021 0.87886 0.91815 1.21184 0.93758 0.99084 1.12440 1.20501 0.98372 0.91709 0.97241 1.20261 0.91850 0.97697 1.15905 1.17192 0.90889 0.83982 0.99929 1.43387 1.24452 1.09959 1.53630 1.20533 0.80713 0.91147 0.78045 1.90816 1.60808 1.38257 1.48390 1.21998 0.98608 0.95454 1.03450 1.21123 0.93334 0.82395 1.01424 1.48357 1.43962 1.19239 1.23956 1.22167 1.01844 0.89578 0.88826 1.22630 0.98667 0.96253 0.99408 1.22341 1.00818 0.95806 1.00646 1.20988 0.78369 0.87576 0.83055 1.90768 1.57020 1.68325 1.24208 1.20178 1.00636 0.89226 1.10766 0.92012 0.85453 0.87057 0.87438 0.75950 0.88430 0.88617 0.88702 0.89104 0.90761 0.90184 0.89887 0.89124 0.88060 0.87794 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.16 13.67 55.48 0.76 -25.40 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.17 -5.20 9.76 0.02 0.00 -5.20 16 10 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 11 C -0.24 -5.46 9.17 -39.36 -0.36 -5.82 16 12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 13 C -0.24 -4.05 9.96 -39.34 -0.39 -4.45 16 14 C 0.17 3.26 6.30 -83.72 -0.53 2.73 16 15 N -0.67 -9.60 5.34 -9.88 -0.05 -9.65 16 16 C 0.51 7.62 7.67 -10.99 -0.08 7.54 16 17 O -0.51 -10.16 13.42 5.56 0.07 -10.08 16 18 C -0.15 -1.56 6.03 -27.88 -0.17 -1.73 16 19 C 0.14 1.55 5.22 -4.04 -0.02 1.53 16 20 N -0.62 -5.66 2.93 -172.30 -0.51 -6.16 16 21 C 0.10 0.50 7.36 -3.03 -0.02 0.48 16 22 C -0.13 -0.46 7.19 -25.01 -0.18 -0.64 16 23 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 24 C 0.51 5.56 8.02 -10.86 -0.09 5.47 16 25 O -0.53 -8.33 17.59 5.56 0.10 -8.23 16 26 C -0.19 -4.38 8.64 -39.21 -0.34 -4.72 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.41 4.07 8.82 -40.82 -0.36 3.71 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 35 H 0.09 0.96 8.10 -51.92 -0.42 0.54 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.13 3.38 6.23 -52.48 -0.33 3.05 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -37.82 359.06 -7.51 -45.33 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.45 Total: 6.22 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.83 Total: -8.24 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.20 Total: -41.21 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.51 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.82 -7.51 -45.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067973405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.636 kcal (2) G-P(sol) polarization free energy of solvation -37.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds