Wall clock time and date at job start Tue Mar 31 2020 12:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47282 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47260 * 30.00056 * 3 2 1 6 6 H 1.48499 * 109.46887 * 149.99583 * 3 2 1 7 7 C 1.38648 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99877 * 174.96487 * 9 7 2 11 11 C 1.38945 * 120.03420 * 5.36179 * 10 9 7 12 12 C 1.38128 * 120.07369 * 179.97438 * 11 10 9 13 13 C 1.38204 * 120.13140 * 359.72301 * 12 11 10 14 14 C 1.38916 * 120.07059 * 0.55096 * 13 12 11 15 15 N 1.39922 * 120.04112 * 179.71999 * 14 13 12 16 16 C 1.34770 * 120.00468 * 214.85586 * 15 14 13 17 17 O 1.21283 * 120.00047 * 355.48433 * 16 15 14 18 18 C 1.50699 * 120.00290 * 175.49093 * 16 15 14 19 19 C 1.53000 * 109.47529 * 179.97438 * 18 16 15 20 20 N 1.46494 * 109.47345 * 179.97438 * 19 18 16 21 21 C 1.46767 * 124.35232 * 269.72434 * 20 19 18 22 22 C 1.54654 * 105.38283 * 162.85515 * 21 20 19 23 23 C 1.54626 * 101.68792 * 25.76834 * 22 21 20 24 24 C 1.34420 * 124.35108 * 90.02855 * 20 19 18 25 25 O 1.21278 * 124.93838 * 0.42470 * 24 20 19 26 26 C 1.38728 * 120.03202 * 185.34281 * 10 9 7 27 27 H 0.97001 * 119.99983 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.96761 * 359.95519 * 11 10 9 29 29 H 1.07993 * 119.93384 * 180.02562 * 12 11 10 30 30 H 1.08007 * 119.96324 * 180.30397 * 13 12 11 31 31 H 0.97006 * 120.00002 * 34.84810 * 15 14 13 32 32 H 1.08997 * 109.47476 * 59.99517 * 18 16 15 33 33 H 1.09002 * 109.46982 * 299.99807 * 18 16 15 34 34 H 1.09002 * 109.47287 * 300.00178 * 19 18 16 35 35 H 1.09008 * 109.47027 * 59.99876 * 19 18 16 36 36 H 1.09000 * 110.24726 * 281.98800 * 21 20 19 37 37 H 1.09004 * 110.24199 * 43.98368 * 21 20 19 38 38 H 1.09002 * 111.19341 * 267.59183 * 22 21 20 39 39 H 1.09003 * 110.82291 * 143.78110 * 22 21 20 40 40 H 1.08990 * 110.48882 * 216.30731 * 23 22 21 41 41 H 1.09004 * 110.59631 * 93.71769 * 23 22 21 42 42 H 1.08005 * 120.06689 * 0.04098 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0700 -3.5047 -0.1051 11 6 3.4578 -3.4383 -0.0947 12 6 4.2069 -4.5939 -0.2016 13 6 3.5788 -5.8199 -0.3134 14 6 2.1916 -5.8924 -0.3301 15 7 1.5565 -7.1334 -0.4493 16 6 0.4020 -7.2364 -1.1370 17 8 -0.1291 -6.2414 -1.5828 18 6 -0.2291 -8.5879 -1.3519 19 6 -1.5211 -8.4256 -2.1553 20 7 -2.1342 -9.7394 -2.3648 21 6 -1.8605 -10.6070 -3.5165 22 6 -2.3582 -12.0108 -3.1002 23 6 -3.4385 -11.6615 -2.0505 24 6 -3.0242 -10.3029 -1.5298 25 8 -3.4356 -9.7957 -0.5079 26 6 1.4366 -4.7332 -0.2231 27 1 -0.4850 0.8401 -0.0004 28 1 3.9516 -2.4821 -0.0033 29 1 5.2854 -4.5398 -0.1928 30 1 4.1672 -6.7223 -0.3919 31 1 1.9471 -7.9198 -0.0369 32 1 -0.4563 -9.0405 -0.3868 33 1 0.4619 -9.2285 -1.9000 34 1 -2.2119 -7.7851 -1.6070 35 1 -1.2942 -7.9728 -3.1206 36 1 -2.4057 -10.2547 -4.3922 37 1 -0.7905 -10.6333 -3.7230 38 1 -1.5553 -12.5971 -2.6534 39 1 -2.7953 -12.5348 -3.9503 40 1 -3.4386 -12.3952 -1.2446 41 1 -4.4226 -11.6077 -2.5163 42 1 0.3579 -4.7873 -0.2318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067973405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:02 Heat of formation + Delta-G solvation = -93.534331 kcal Electronic energy + Delta-G solvation = -25401.333284 eV Core-core repulsion = 21539.098606 eV Total energy + Delta-G solvation = -3862.234679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74228 -41.23994 -40.33375 -38.29089 -37.50592 -35.58432 -34.83427 -34.27659 -31.67249 -30.90375 -29.76057 -28.43864 -27.36675 -25.72949 -23.74005 -23.01377 -22.69386 -21.50323 -20.37905 -19.97578 -19.18582 -18.42130 -17.58589 -17.35747 -17.04717 -16.94744 -16.75364 -16.29674 -15.99671 -15.87293 -15.53912 -15.19966 -14.82284 -14.68611 -14.34587 -14.26173 -14.14394 -14.12045 -13.60674 -13.39351 -13.17431 -13.15064 -12.96750 -12.69044 -12.40117 -12.34788 -12.16583 -12.12590 -11.81137 -11.47292 -11.30507 -10.90537 -10.80334 -10.77992 -9.80294 -9.36908 -8.89631 -8.47951 -6.18066 0.39756 0.68893 1.32983 1.43130 1.49279 1.52345 1.56034 1.76335 2.15148 2.26965 2.81391 3.15810 3.42578 3.43889 3.63810 3.68755 3.93577 3.94699 4.10358 4.13337 4.26810 4.35191 4.39105 4.41774 4.61202 4.68116 4.69720 4.73570 4.75221 4.86938 4.91751 5.05457 5.10318 5.14347 5.26907 5.39717 5.44756 5.50927 5.62217 5.72827 6.01668 6.12978 6.19163 6.42163 6.95448 7.09814 7.15241 7.78541 8.76106 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.002422 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.973241 B =11557.866633 C =12515.153889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.029 4.029 3 Si 1.025 2.975 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.237 6.237 10 C 0.124 3.876 11 C -0.255 4.255 12 C -0.049 4.049 13 C -0.201 4.201 14 C 0.181 3.819 15 N -0.653 5.653 16 C 0.506 3.494 17 O -0.566 6.566 18 C -0.132 4.132 19 C 0.138 3.862 20 N -0.617 5.617 21 C 0.090 3.910 22 C -0.116 4.116 23 C -0.149 4.149 24 C 0.496 3.504 25 O -0.593 6.593 26 C -0.216 4.216 27 H 0.272 0.728 28 H 0.124 0.876 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.432 0.568 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -28.831 -8.190 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.226 4.226 3 Si 0.844 3.156 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.144 6.144 10 C 0.073 3.927 11 C -0.274 4.274 12 C -0.067 4.067 13 C -0.222 4.222 14 C 0.087 3.913 15 N -0.301 5.301 16 C 0.294 3.706 17 O -0.444 6.444 18 C -0.173 4.173 19 C 0.015 3.985 20 N -0.350 5.350 21 C -0.031 4.031 22 C -0.154 4.154 23 C -0.189 4.189 24 C 0.286 3.714 25 O -0.474 6.474 26 C -0.238 4.238 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.179 0.821 30 H 0.185 0.815 31 H 0.272 0.728 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.498 -27.709 -7.993 29.051 hybrid contribution -0.259 1.225 0.490 1.345 sum 3.239 -26.484 -7.502 27.716 Atomic orbital electron populations 1.70238 1.08367 1.28813 1.49052 1.26761 0.96878 1.03147 0.95817 0.84506 0.77853 0.73982 0.79296 1.18751 1.19696 1.17041 1.21932 0.92724 0.81242 1.53089 0.87506 1.83965 1.36297 1.12761 1.81343 1.19708 0.91837 0.87405 0.93749 1.21339 0.92375 1.00882 1.12843 1.21066 1.00625 0.90397 0.94652 1.20914 0.90892 0.99515 1.10847 1.17359 0.91871 0.84171 0.97921 1.43318 1.24219 1.09253 1.53278 1.21454 0.80150 0.92262 0.76705 1.90823 1.62187 1.40714 1.50632 1.21916 0.98347 0.92725 1.04293 1.20914 0.93089 0.83335 1.01152 1.48493 1.43081 1.18539 1.24879 1.22540 1.03556 0.89688 0.87343 1.22680 0.98032 0.95319 0.99341 1.22386 1.02243 0.92569 1.01682 1.21982 0.77885 0.89236 0.82303 1.90727 1.59246 1.70237 1.27146 1.20201 0.99502 0.90857 1.13224 0.91899 0.85876 0.82096 0.81536 0.72780 0.87659 0.83860 0.93220 0.88779 0.89947 0.87994 0.88447 0.86412 0.87203 0.86728 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.63 13.67 21.61 0.30 -60.33 16 2 C -0.03 -1.76 5.49 84.83 0.47 -1.29 16 3 Si 1.03 44.69 29.55 68.60 2.03 46.71 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.41 -25.43 9.49 67.92 0.64 -24.79 16 8 H 0.11 5.90 5.20 -2.91 -0.02 5.88 16 9 O -0.24 -15.53 9.76 -22.84 -0.22 -15.75 16 10 C 0.12 6.74 6.64 22.56 0.15 6.89 16 11 C -0.25 -11.35 9.17 22.41 0.21 -11.15 16 12 C -0.05 -1.60 10.03 22.24 0.22 -1.38 16 13 C -0.20 -5.89 9.96 22.42 0.22 -5.67 16 14 C 0.18 6.54 6.30 38.14 0.24 6.78 16 15 N -0.65 -17.18 5.34 -303.57 -1.62 -18.79 16 16 C 0.51 14.96 7.67 87.66 0.67 15.63 16 17 O -0.57 -24.08 13.42 -3.04 -0.04 -24.12 16 18 C -0.13 -2.45 6.03 29.85 0.18 -2.27 16 19 C 0.14 3.14 5.22 86.38 0.45 3.59 16 20 N -0.62 -10.61 2.93 -817.63 -2.40 -13.00 16 21 C 0.09 0.61 7.36 86.89 0.64 1.25 16 22 C -0.12 -0.32 7.19 31.71 0.23 -0.09 16 23 C -0.15 -1.45 6.86 30.59 0.21 -1.24 16 24 C 0.50 10.71 8.02 87.90 0.70 11.42 16 25 O -0.59 -19.90 17.59 -3.02 -0.05 -19.96 16 26 C -0.22 -10.71 8.64 22.51 0.19 -10.52 16 27 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 28 H 0.12 5.49 5.63 -2.91 -0.02 5.47 16 29 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.43 6.69 8.82 -92.70 -0.82 5.87 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.57 7.88 -2.39 -0.02 1.55 16 35 H 0.09 2.04 8.10 -2.38 -0.02 2.02 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.10 5.47 6.23 -2.91 -0.02 5.45 16 Total: -1.00 -97.63 359.06 3.66 -93.97 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.24 Total: 24.12 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 5.43 Total: -12.84 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -3.72 Total: -92.13 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -0.32 Total: -59.83 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -97.63 3.66 -93.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067973405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.432 kcal (2) G-P(sol) polarization free energy of solvation -97.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds