Wall clock time and date at job start Tue Mar 31 2020 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48504 * 109.46942 * 240.00088 * 3 2 1 5 5 H 1.48498 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47088 * 120.00194 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47432 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47739 * 179.97438 * 10 9 7 12 12 C 1.35974 * 117.00475 * 179.97438 * 11 10 9 13 13 C 1.38792 * 120.49339 * 0.26141 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.28135 * 13 12 11 15 15 C 1.38091 * 119.35750 * 359.45641 * 14 13 12 16 16 N 1.31952 * 120.95914 * 0.28106 * 15 14 13 17 17 C 1.32297 * 121.68569 * 359.97438 * 16 15 14 18 18 N 1.39472 * 119.72666 * 179.97438 * 17 16 15 19 19 C 1.34770 * 120.00046 * 0.02562 * 18 17 16 20 20 O 1.21605 * 120.00517 * 0.02562 * 19 18 17 21 21 C 1.47446 * 119.99920 * 179.97438 * 19 18 17 22 22 C 1.32434 * 118.48156 * 179.72928 * 21 19 18 23 23 C 1.50459 * 122.28793 * 180.15935 * 22 21 19 24 24 C 1.53232 * 109.50743 * 342.90263 * 23 22 21 25 25 C 1.53469 * 108.24740 * 46.96935 * 24 23 22 26 26 O 1.35498 * 118.48351 * 0.02562 * 21 19 18 27 27 H 0.96991 * 119.99840 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47335 * 59.99721 * 9 7 2 29 29 H 1.09006 * 109.47227 * 299.99575 * 9 7 2 30 30 H 1.09000 * 109.47311 * 59.99434 * 10 9 7 31 31 H 1.09006 * 109.46785 * 299.99535 * 10 9 7 32 32 H 1.07992 * 120.78012 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 34 34 H 1.08000 * 119.51548 * 180.25471 * 15 14 13 35 35 H 0.96997 * 119.99505 * 179.97438 * 18 17 16 36 36 H 1.08006 * 118.86050 * 0.41449 * 22 21 19 37 37 H 1.09001 * 109.60758 * 222.79100 * 23 22 21 38 38 H 1.09004 * 109.29038 * 102.81935 * 23 22 21 39 39 H 1.08994 * 109.70605 * 287.27913 * 24 23 22 40 40 H 1.08999 * 109.74353 * 166.67650 * 24 23 22 41 41 H 1.08994 * 109.69827 * 177.32611 * 25 24 23 42 42 H 1.09004 * 109.72699 * 56.75630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0045 12 6 2.2712 -6.0401 0.0050 13 6 3.6578 -5.9795 0.0094 14 6 4.3716 -7.1697 0.0038 15 6 3.6876 -8.3693 0.0055 16 7 2.3684 -8.3986 0.0069 17 6 1.6487 -7.2884 0.0071 18 7 0.2562 -7.3670 0.0080 19 6 -0.3508 -8.5702 0.0091 20 8 0.3154 -9.5875 0.0098 21 6 -1.8230 -8.6532 0.0106 22 6 -2.3880 -9.8509 0.0062 23 6 -3.8813 -10.0351 0.0038 24 6 -4.5587 -8.7290 0.4316 25 6 -3.9167 -7.5758 -0.3515 26 8 -2.5352 -7.5005 0.0103 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.8719 -3.6036 0.8926 31 1 2.8718 -3.6052 -0.8874 32 1 4.1694 -5.0284 0.0128 33 1 5.4515 -7.1579 0.0027 34 1 4.2405 -9.2971 0.0054 35 1 -0.2752 -6.5555 0.0085 36 1 -1.7549 -10.7260 0.0085 37 1 -4.1529 -10.8299 0.6985 38 1 -4.2095 -10.3027 -1.0007 39 1 -4.4139 -8.5728 1.5005 40 1 -5.6244 -8.7765 0.2082 41 1 -4.4140 -6.6391 -0.0999 42 1 -4.0060 -7.7631 -1.4216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073287759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:28 Heat of formation + Delta-G solvation = -56.080748 kcal Electronic energy + Delta-G solvation = -25869.525864 eV Core-core repulsion = 22008.915295 eV Total energy + Delta-G solvation = -3860.610569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05424 -40.27538 -38.82505 -37.72638 -35.04536 -34.07375 -33.45068 -31.98028 -31.50027 -30.52144 -29.08042 -26.20732 -25.42544 -24.73181 -23.34742 -22.74906 -21.35199 -20.55873 -19.13913 -18.65006 -17.89252 -17.31934 -16.58125 -16.13771 -16.02275 -15.87684 -15.56159 -14.91109 -14.77526 -14.65217 -14.55748 -14.31031 -13.96157 -13.73830 -13.50878 -13.29309 -12.84157 -12.78582 -12.38521 -12.01191 -11.90533 -11.47203 -11.08474 -11.05476 -10.96548 -10.92380 -10.72754 -10.67493 -10.39109 -10.02395 -9.76136 -9.40894 -9.21501 -9.09712 -8.69241 -8.49932 -7.64404 -6.15669 -4.20716 0.99081 1.45914 1.53671 2.75428 3.08339 3.24896 3.25113 3.29657 3.30817 3.54954 4.03689 4.33091 4.35679 4.41777 4.56002 4.66960 4.85967 4.96100 4.98346 5.12345 5.20197 5.20942 5.24945 5.31476 5.41296 5.47490 5.53502 5.76306 5.85530 5.89024 5.92329 6.06128 6.09286 6.19143 6.35114 6.56350 6.60708 7.04768 7.34527 7.39300 7.55955 7.65758 7.87294 8.03220 8.16644 8.31700 8.84309 9.43937 10.95685 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003321 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.533678 B = 8430.275359 C =10898.709597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.314 6.314 12 C 0.071 3.929 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.074 3.926 16 N -0.445 5.445 17 C 0.326 3.674 18 N -0.638 5.638 19 C 0.562 3.438 20 O -0.470 6.470 21 C 0.035 3.965 22 C -0.189 4.189 23 C -0.086 4.086 24 C -0.164 4.164 25 C 0.061 3.939 26 O -0.315 6.315 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.432 0.568 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -18.088 -0.379 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.226 6.226 12 C 0.019 3.981 13 C -0.175 4.175 14 C -0.179 4.179 15 C -0.082 4.082 16 N -0.160 5.160 17 C 0.093 3.907 18 N -0.285 5.285 19 C 0.348 3.652 20 O -0.342 6.342 21 C -0.013 4.013 22 C -0.210 4.210 23 C -0.123 4.123 24 C -0.201 4.201 25 C -0.013 4.013 26 O -0.230 6.230 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.271 0.729 36 H 0.157 0.843 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.502 -19.266 -0.335 19.788 hybrid contribution 0.705 2.136 -0.057 2.250 sum -3.798 -17.129 -0.391 17.550 Atomic orbital electron populations 1.69954 1.06089 1.27155 1.49417 1.24976 0.94909 0.99368 0.94812 0.86547 0.79518 0.82576 0.78739 1.20084 1.21092 1.20076 1.20911 0.93013 0.90159 1.52634 0.92405 1.19121 0.94120 0.88836 0.98956 1.23406 0.97265 0.80324 0.99820 1.86126 1.36193 1.12885 1.87433 1.19592 0.91142 0.87115 1.00220 1.21615 0.92175 1.00405 1.03299 1.21901 1.01205 0.92513 1.02323 1.22407 0.88736 0.97924 0.99164 1.67612 1.07970 1.26906 1.13517 1.17786 0.84659 0.87091 1.01159 1.43315 1.03862 1.10563 1.70769 1.18004 0.85990 0.83695 0.77557 1.90913 1.63552 1.34034 1.45653 1.20214 0.90065 0.86921 1.04132 1.23096 0.97448 0.97029 1.03415 1.20492 0.91238 0.98101 1.02488 1.22285 1.00815 0.95358 1.01676 1.23050 0.78984 1.00423 0.98887 1.85964 1.23538 1.29193 1.84277 0.92602 0.95307 0.95304 0.92925 0.92925 0.83658 0.84729 0.82551 0.72892 0.84301 0.89647 0.90126 0.90270 0.89727 0.87091 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.07 1.32 4.70 37.16 0.17 1.50 16 11 O -0.31 -6.01 9.38 -19.66 -0.18 -6.20 16 12 C 0.07 1.23 6.72 -38.91 -0.26 0.96 16 13 C -0.15 -2.20 9.14 -39.17 -0.36 -2.56 16 14 C -0.16 -2.00 10.10 -39.43 -0.40 -2.40 16 15 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.65 7.87 -12.24 -0.10 -7.75 16 17 C 0.33 5.69 7.44 -154.51 -1.15 4.54 16 18 N -0.64 -10.47 5.38 -12.27 -0.07 -10.54 16 19 C 0.56 9.01 7.73 -12.51 -0.10 8.92 16 20 O -0.47 -8.56 14.29 5.27 0.08 -8.48 16 21 C 0.03 0.46 6.57 -37.75 -0.25 0.21 16 22 C -0.19 -2.09 9.54 -36.35 -0.35 -2.44 16 23 C -0.09 -0.67 6.22 -27.88 -0.17 -0.84 16 24 C -0.16 -1.19 6.23 -26.37 -0.16 -1.35 16 25 C 0.06 0.54 7.07 37.40 0.26 0.81 16 26 O -0.32 -3.95 9.57 -18.19 -0.17 -4.13 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 32 H 0.15 1.99 6.44 -52.49 -0.34 1.65 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.43 6.78 7.36 -40.82 -0.30 6.48 16 36 H 0.14 1.60 7.28 -52.48 -0.38 1.22 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.36 356.96 -8.45 -40.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.59 Total: 4.37 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.51 Total: -4.26 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.57 Total: -43.24 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.28 Total: -18.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.36 -8.45 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073287759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.268 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds