Wall clock time and date at job start Tue Mar 31 2020 12:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48504 * 109.46942 * 240.00088 * 3 2 1 5 5 H 1.48498 * 109.46826 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47088 * 120.00194 * 3 2 1 7 7 C 1.37881 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00442 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47432 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47739 * 179.97438 * 10 9 7 12 12 C 1.35974 * 117.00475 * 179.97438 * 11 10 9 13 13 C 1.38792 * 120.49339 * 0.26141 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.28135 * 13 12 11 15 15 C 1.38091 * 119.35750 * 359.45641 * 14 13 12 16 16 N 1.31952 * 120.95914 * 0.28106 * 15 14 13 17 17 C 1.32297 * 121.68569 * 359.97438 * 16 15 14 18 18 N 1.39472 * 119.72666 * 179.97438 * 17 16 15 19 19 C 1.34770 * 120.00046 * 0.02562 * 18 17 16 20 20 O 1.21605 * 120.00517 * 0.02562 * 19 18 17 21 21 C 1.47446 * 119.99920 * 179.97438 * 19 18 17 22 22 C 1.32434 * 118.48156 * 179.72928 * 21 19 18 23 23 C 1.50459 * 122.28793 * 180.15935 * 22 21 19 24 24 C 1.53232 * 109.50743 * 342.90263 * 23 22 21 25 25 C 1.53469 * 108.24740 * 46.96935 * 24 23 22 26 26 O 1.35498 * 118.48351 * 0.02562 * 21 19 18 27 27 H 0.96991 * 119.99840 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47335 * 59.99721 * 9 7 2 29 29 H 1.09006 * 109.47227 * 299.99575 * 9 7 2 30 30 H 1.09000 * 109.47311 * 59.99434 * 10 9 7 31 31 H 1.09006 * 109.46785 * 299.99535 * 10 9 7 32 32 H 1.07992 * 120.78012 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 34 34 H 1.08000 * 119.51548 * 180.25471 * 15 14 13 35 35 H 0.96997 * 119.99505 * 179.97438 * 18 17 16 36 36 H 1.08006 * 118.86050 * 0.41449 * 22 21 19 37 37 H 1.09001 * 109.60758 * 222.79100 * 23 22 21 38 38 H 1.09004 * 109.29038 * 102.81935 * 23 22 21 39 39 H 1.08994 * 109.70605 * 287.27913 * 24 23 22 40 40 H 1.08999 * 109.74353 * 166.67650 * 24 23 22 41 41 H 1.08994 * 109.69827 * 177.32611 * 25 24 23 42 42 H 1.09004 * 109.72699 * 56.75630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 8 1.5307 -4.8997 0.0045 12 6 2.2712 -6.0401 0.0050 13 6 3.6578 -5.9795 0.0094 14 6 4.3716 -7.1697 0.0038 15 6 3.6876 -8.3693 0.0055 16 7 2.3684 -8.3986 0.0069 17 6 1.6487 -7.2884 0.0071 18 7 0.2562 -7.3670 0.0080 19 6 -0.3508 -8.5702 0.0091 20 8 0.3154 -9.5875 0.0098 21 6 -1.8230 -8.6532 0.0106 22 6 -2.3880 -9.8509 0.0062 23 6 -3.8813 -10.0351 0.0038 24 6 -4.5587 -8.7290 0.4316 25 6 -3.9167 -7.5758 -0.3515 26 8 -2.5352 -7.5005 0.0103 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.8719 -3.6036 0.8926 31 1 2.8718 -3.6052 -0.8874 32 1 4.1694 -5.0284 0.0128 33 1 5.4515 -7.1579 0.0027 34 1 4.2405 -9.2971 0.0054 35 1 -0.2752 -6.5555 0.0085 36 1 -1.7549 -10.7260 0.0085 37 1 -4.1529 -10.8299 0.6985 38 1 -4.2095 -10.3027 -1.0007 39 1 -4.4139 -8.5728 1.5005 40 1 -5.6244 -8.7765 0.2082 41 1 -4.4140 -6.6391 -0.0999 42 1 -4.0060 -7.7631 -1.4216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073287759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:27 Heat of formation + Delta-G solvation = -76.267467 kcal Electronic energy + Delta-G solvation = -25870.401226 eV Core-core repulsion = 22008.915295 eV Total energy + Delta-G solvation = -3861.485931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21650 -41.29067 -39.98867 -39.07223 -36.21773 -35.46323 -34.86128 -33.03039 -32.71601 -32.14255 -30.39712 -27.18297 -27.01718 -25.74818 -24.62514 -23.88212 -22.85597 -21.87863 -20.14821 -19.65940 -19.24364 -18.60788 -18.03493 -17.54055 -17.24476 -17.10619 -16.68560 -16.49433 -15.99884 -15.89632 -15.68103 -15.19723 -15.01853 -14.79813 -14.68266 -14.34132 -14.15559 -14.02980 -13.68822 -13.53848 -13.31677 -12.82058 -12.72169 -12.45286 -12.19054 -11.95401 -11.77567 -11.73010 -11.68912 -11.62636 -11.45634 -11.40172 -10.60031 -10.44701 -10.29971 -9.59812 -8.89214 -8.24811 -6.37955 -0.13058 0.26556 0.49018 1.42634 1.45755 1.53526 1.67565 2.00934 2.09909 2.26435 2.44573 2.85626 3.10065 3.34829 3.62333 3.77108 3.83658 3.91837 3.97687 4.10049 4.21739 4.28554 4.31776 4.32084 4.42505 4.45586 4.61852 4.73857 4.74393 4.92887 4.95156 5.08998 5.16022 5.18501 5.20086 5.25266 5.30922 5.49730 5.50359 5.72408 5.97514 6.07773 6.27429 6.40765 6.76637 6.83392 7.13019 7.32028 8.87726 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.003321 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.533678 B = 8430.275359 C =10898.709597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.331 6.331 12 C 0.043 3.957 13 C -0.147 4.147 14 C -0.140 4.140 15 C 0.074 3.926 16 N -0.473 5.473 17 C 0.304 3.696 18 N -0.642 5.642 19 C 0.556 3.444 20 O -0.502 6.502 21 C 0.010 3.990 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.158 4.158 25 C 0.049 3.951 26 O -0.337 6.337 27 H 0.266 0.734 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.160 0.840 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.430 0.570 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -18.668 -0.476 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.245 6.245 12 C -0.007 4.007 13 C -0.174 4.174 14 C -0.161 4.161 15 C -0.083 4.083 16 N -0.189 5.189 17 C 0.072 3.928 18 N -0.289 5.289 19 C 0.344 3.656 20 O -0.376 6.376 21 C -0.038 4.038 22 C -0.187 4.187 23 C -0.123 4.123 24 C -0.195 4.195 25 C -0.025 4.025 26 O -0.252 6.252 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.197 0.803 34 H 0.207 0.793 35 H 0.269 0.731 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.187 -19.856 -0.432 20.115 hybrid contribution 0.312 2.164 -0.036 2.187 sum -2.875 -17.691 -0.469 17.930 Atomic orbital electron populations 1.70101 1.07955 1.28201 1.50554 1.25985 0.95773 1.03504 0.94253 0.85394 0.78156 0.77494 0.79375 1.18905 1.20998 1.18913 1.21369 0.93888 0.90978 1.52146 0.90988 1.18941 0.94520 0.91093 0.96167 1.22982 0.95625 0.79517 1.00993 1.86053 1.36801 1.13156 1.88447 1.19763 0.92295 0.86097 1.02590 1.21930 0.91148 1.02067 1.02234 1.22328 1.03209 0.90912 0.99631 1.23121 0.87885 0.99985 0.97268 1.67664 1.09704 1.27010 1.14495 1.17999 0.85112 0.87433 1.02209 1.43415 1.03947 1.10734 1.70779 1.18501 0.87319 0.83116 0.76643 1.90863 1.64672 1.34615 1.47427 1.19937 0.88777 0.87922 1.07153 1.23437 0.99603 0.95802 0.99889 1.20658 0.88448 0.99013 1.04192 1.22283 1.02262 0.94179 1.00805 1.23371 0.77404 1.01948 0.99781 1.85925 1.25351 1.29161 1.84811 0.92513 0.98153 0.98197 0.91645 0.91613 0.82292 0.80296 0.79262 0.73128 0.84994 0.87626 0.88120 0.91112 0.86789 0.86040 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.55 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.08 3.37 4.70 71.98 0.34 3.71 16 11 O -0.33 -13.18 9.38 -93.26 -0.88 -14.05 16 12 C 0.04 1.51 6.72 22.70 0.15 1.66 16 13 C -0.15 -4.12 9.14 22.53 0.21 -3.92 16 14 C -0.14 -3.10 10.10 22.37 0.23 -2.88 16 15 C 0.07 1.90 11.17 84.64 0.95 2.85 16 16 N -0.47 -16.31 7.87 -192.63 -1.52 -17.83 16 17 C 0.30 10.96 7.44 133.02 0.99 11.95 16 18 N -0.64 -22.54 5.38 -310.99 -1.67 -24.21 16 19 C 0.56 18.92 7.73 86.67 0.67 19.59 16 20 O -0.50 -19.10 14.29 -4.05 -0.06 -19.15 16 21 C 0.01 0.26 6.57 23.58 0.15 0.42 16 22 C -0.17 -3.65 9.54 24.49 0.23 -3.42 16 23 C -0.09 -1.16 6.22 29.85 0.19 -0.97 16 24 C -0.16 -2.02 6.23 30.83 0.19 -1.83 16 25 C 0.05 0.85 7.07 72.14 0.51 1.36 16 26 O -0.34 -8.86 9.57 -87.99 -0.84 -9.71 16 27 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 30 H 0.07 2.46 7.69 -2.39 -0.02 2.44 16 31 H 0.07 2.47 7.71 -2.38 -0.02 2.45 16 32 H 0.16 3.95 6.44 -2.91 -0.02 3.93 16 33 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.43 14.82 7.36 -92.71 -0.68 14.14 16 36 H 0.13 3.07 7.28 -2.91 -0.02 3.05 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -73.25 356.96 3.37 -69.88 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.37 Total: 23.99 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 5.66 Total: 1.53 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -2.90 Total: -96.85 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.78 Total: -42.91 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.25 3.37 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073287759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.386 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds