Wall clock time and date at job start Tue Mar 31 2020 12:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47023 * 239.99909 * 3 2 1 5 5 H 1.48497 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47103 * 119.99551 * 3 2 1 7 7 C 1.38656 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00196 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00166 * 174.95869 * 9 7 2 11 11 C 1.38953 * 120.02789 * 5.36442 * 10 9 7 12 12 C 1.38138 * 120.07937 * 179.97438 * 11 10 9 13 13 C 1.38181 * 120.14568 * 359.74951 * 12 11 10 14 14 C 1.38970 * 120.06147 * 0.50541 * 13 12 11 15 15 N 1.39729 * 120.04558 * 179.76827 * 14 13 12 16 16 C 1.34769 * 120.00156 * 214.85930 * 15 14 13 17 17 O 1.21378 * 120.00424 * 355.49451 * 16 15 14 18 18 C 1.49355 * 120.00162 * 175.49408 * 16 15 14 19 19 O 1.21364 * 119.99477 * 0.02562 * 18 16 15 20 20 N 1.34770 * 120.00581 * 180.02562 * 18 16 15 21 21 C 1.46494 * 120.00461 * 179.97438 * 20 18 16 22 22 C 1.53003 * 109.47461 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.47160 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.49680 * 243.74507 * 23 22 21 25 25 C 1.53002 * 117.49682 * 175.08734 * 23 22 21 26 26 C 1.38719 * 120.02890 * 185.34301 * 10 9 7 27 27 H 0.97003 * 120.00320 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96448 * 359.95429 * 11 10 9 29 29 H 1.08007 * 119.92405 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.96971 * 180.25521 * 13 12 11 31 31 H 0.96996 * 119.99374 * 34.86187 * 15 14 13 32 32 H 0.97005 * 119.99713 * 0.02562 * 20 18 16 33 33 H 1.09007 * 109.47131 * 60.00051 * 21 20 18 34 34 H 1.08999 * 109.47259 * 300.00375 * 21 20 18 35 35 H 1.09007 * 109.46764 * 299.99966 * 22 21 20 36 36 H 1.08995 * 109.46823 * 59.99473 * 22 21 20 37 37 H 1.08998 * 115.55190 * 29.41476 * 23 22 21 38 38 H 1.08998 * 117.49796 * 0.02562 * 24 23 22 39 39 H 1.09000 * 117.49932 * 145.02044 * 24 23 22 40 40 H 1.09001 * 117.49329 * 214.97838 * 25 23 22 41 41 H 1.09004 * 117.49793 * 359.97438 * 25 23 22 42 42 H 1.07999 * 120.07261 * 0.04847 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6965 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0701 -3.5047 -0.1052 11 6 3.4579 -3.4382 -0.0949 12 6 4.2072 -4.5938 -0.2019 13 6 3.5798 -5.8198 -0.3143 14 6 2.1921 -5.8927 -0.3306 15 7 1.5580 -7.1322 -0.4492 16 6 0.4034 -7.2354 -1.1366 17 8 -0.1283 -6.2398 -1.5830 18 6 -0.2219 -8.5750 -1.3492 19 8 0.3096 -9.5705 -0.9025 20 7 -1.3762 -8.6784 -2.0371 21 6 -1.9893 -9.9924 -2.2461 22 6 -3.2805 -9.8306 -3.0507 23 6 -3.9211 -11.2030 -3.2684 24 6 -4.0370 -11.7080 -4.7080 25 6 -5.2871 -11.2438 -3.9564 26 6 1.4365 -4.7331 -0.2232 27 1 -0.4851 0.8400 -0.0004 28 1 3.9515 -2.4820 -0.0034 29 1 5.2859 -4.5392 -0.1932 30 1 4.1684 -6.7218 -0.3937 31 1 1.9489 -7.9182 -0.0367 32 1 -1.8008 -7.8828 -2.3944 33 1 -2.2165 -10.4450 -1.2808 34 1 -1.2980 -10.6328 -2.7939 35 1 -3.9720 -9.1901 -2.5032 36 1 -3.0529 -9.3782 -4.0159 37 1 -3.7272 -11.9411 -2.4902 38 1 -3.6565 -11.0629 -5.4999 39 1 -3.9198 -12.7785 -4.8768 40 1 -5.9917 -12.0091 -3.6309 41 1 -5.7296 -10.2930 -4.2535 42 1 0.3579 -4.7872 -0.2319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076602251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:31 Heat of formation + Delta-G solvation = -43.242859 kcal Electronic energy + Delta-G solvation = -24919.947604 eV Core-core repulsion = 21059.893727 eV Total energy + Delta-G solvation = -3860.053877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88135 -39.36470 -38.44949 -37.99953 -36.63133 -35.41259 -34.06881 -32.26653 -30.78210 -29.64455 -28.65085 -25.74804 -25.18814 -23.35939 -22.76304 -21.98783 -21.40080 -21.04384 -20.07960 -18.73731 -18.13288 -17.10065 -16.78765 -16.29065 -15.98543 -15.63442 -15.30881 -15.11187 -15.06683 -14.45866 -14.31663 -14.21833 -13.84185 -13.61205 -13.49737 -12.88463 -12.55213 -12.47895 -12.17828 -11.94230 -11.87305 -11.78913 -11.65726 -11.57035 -11.14543 -11.01879 -10.79360 -10.71069 -10.49256 -10.36094 -9.86184 -9.66615 -9.48468 -9.21783 -8.83175 -7.79663 -7.23342 -6.43756 -4.03054 1.25504 2.08369 2.29946 2.34828 3.13651 3.14549 3.17914 3.23467 3.34464 3.56396 3.97571 4.20160 4.35630 4.44702 4.48521 4.56203 4.73596 4.85074 5.06456 5.10205 5.15845 5.24327 5.28590 5.49024 5.51044 5.59161 5.61137 5.71017 5.79454 5.84487 5.97288 6.03357 6.13282 6.30929 6.55402 6.67458 6.94410 6.99006 7.04098 7.31247 7.41514 7.46202 7.66101 7.75048 8.00362 8.06919 9.00927 9.71016 10.73898 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.002308 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.445573 B =12128.970709 C =13553.728519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.166 3.834 11 C -0.241 4.241 12 C -0.058 4.058 13 C -0.229 4.229 14 C 0.167 3.833 15 N -0.637 5.637 16 C 0.498 3.502 17 O -0.490 6.490 18 C 0.514 3.486 19 O -0.522 6.522 20 N -0.702 5.702 21 C 0.121 3.879 22 C -0.104 4.104 23 C -0.152 4.152 24 C -0.180 4.180 25 C -0.179 4.179 26 C -0.185 4.185 27 H 0.271 0.729 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -20.007 -5.592 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.111 3.889 11 C -0.261 4.261 12 C -0.077 4.077 13 C -0.250 4.250 14 C 0.075 3.925 15 N -0.283 5.283 16 C 0.279 3.721 17 O -0.363 6.363 18 C 0.294 3.706 19 O -0.398 6.398 20 N -0.356 5.356 21 C -0.002 4.002 22 C -0.141 4.141 23 C -0.170 4.170 24 C -0.217 4.217 25 C -0.216 4.216 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.255 0.745 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.622 -19.819 -5.598 21.107 hybrid contribution 0.503 0.725 -0.007 0.883 sum -4.119 -19.094 -5.605 20.322 Atomic orbital electron populations 1.70039 1.05975 1.27810 1.45632 1.25309 0.95852 0.98860 0.96513 0.85769 0.78684 0.79713 0.79181 1.19477 1.20293 1.19481 1.21304 0.91814 0.80748 1.53007 0.88986 1.83989 1.34225 1.11322 1.77961 1.19105 0.90036 0.87829 0.91963 1.21219 0.93734 0.99158 1.11951 1.20520 0.98527 0.91563 0.97062 1.20305 0.91660 0.97970 1.15095 1.17180 0.91042 0.83362 1.00956 1.42993 1.23009 1.10868 1.51418 1.20108 0.82439 0.89404 0.80148 1.90864 1.60627 1.37326 1.47441 1.20087 0.81808 0.89372 0.79335 1.90757 1.62182 1.38095 1.48751 1.45757 1.23652 1.11358 1.54829 1.21465 0.94158 0.83932 1.00678 1.21400 0.95674 0.96144 1.00923 1.22154 1.00226 0.98220 0.96438 1.23087 1.02255 1.01684 0.94706 1.22997 0.90904 1.03313 1.04374 1.20152 1.00537 0.89189 1.10760 0.91934 0.85306 0.86808 0.87059 0.74522 0.74811 0.90752 0.90725 0.90386 0.90703 0.87349 0.88614 0.88767 0.88698 0.88598 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.17 -5.01 9.76 0.03 0.00 -5.01 16 10 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 11 C -0.24 -5.22 9.17 -39.35 -0.36 -5.58 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 13 C -0.23 -3.93 9.96 -39.33 -0.39 -4.33 16 14 C 0.17 3.14 6.29 -83.77 -0.53 2.62 16 15 N -0.64 -9.90 5.32 -10.31 -0.05 -9.96 16 16 C 0.50 7.90 7.73 -11.63 -0.09 7.81 16 17 O -0.49 -9.26 13.91 5.47 0.08 -9.18 16 18 C 0.51 6.85 7.89 -11.63 -0.09 6.76 16 19 O -0.52 -7.62 16.48 5.48 0.09 -7.53 16 20 N -0.70 -7.34 5.55 -60.76 -0.34 -7.68 16 21 C 0.12 0.98 5.63 -4.04 -0.02 0.96 16 22 C -0.10 -0.66 5.61 -26.73 -0.15 -0.81 16 23 C -0.15 -0.90 5.73 -90.62 -0.52 -1.42 16 24 C -0.18 -1.03 10.18 -26.69 -0.27 -1.30 16 25 C -0.18 -1.01 10.25 -26.69 -0.27 -1.28 16 26 C -0.19 -4.19 8.64 -39.19 -0.34 -4.53 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.13 2.75 5.63 -52.49 -0.30 2.46 16 29 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 30 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.42 5.35 8.30 -40.82 -0.34 5.01 16 32 H 0.42 4.05 7.94 -40.82 -0.32 3.72 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 37 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.13 3.19 6.23 -52.49 -0.33 2.87 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -33.21 364.85 -7.81 -41.02 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.32 Total: 10.47 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.50 Total: -8.44 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.37 Total: -42.34 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.72 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.21 -7.81 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076602251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.227 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds