Wall clock time and date at job start Tue Mar 31 2020 12:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47023 * 239.99909 * 3 2 1 5 5 H 1.48497 * 109.46920 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47103 * 119.99551 * 3 2 1 7 7 C 1.38656 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00196 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00166 * 174.95869 * 9 7 2 11 11 C 1.38953 * 120.02789 * 5.36442 * 10 9 7 12 12 C 1.38138 * 120.07937 * 179.97438 * 11 10 9 13 13 C 1.38181 * 120.14568 * 359.74951 * 12 11 10 14 14 C 1.38970 * 120.06147 * 0.50541 * 13 12 11 15 15 N 1.39729 * 120.04558 * 179.76827 * 14 13 12 16 16 C 1.34769 * 120.00156 * 214.85930 * 15 14 13 17 17 O 1.21378 * 120.00424 * 355.49451 * 16 15 14 18 18 C 1.49355 * 120.00162 * 175.49408 * 16 15 14 19 19 O 1.21364 * 119.99477 * 0.02562 * 18 16 15 20 20 N 1.34770 * 120.00581 * 180.02562 * 18 16 15 21 21 C 1.46494 * 120.00461 * 179.97438 * 20 18 16 22 22 C 1.53003 * 109.47461 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.47160 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.49680 * 243.74507 * 23 22 21 25 25 C 1.53002 * 117.49682 * 175.08734 * 23 22 21 26 26 C 1.38719 * 120.02890 * 185.34301 * 10 9 7 27 27 H 0.97003 * 120.00320 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96448 * 359.95429 * 11 10 9 29 29 H 1.08007 * 119.92405 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.96971 * 180.25521 * 13 12 11 31 31 H 0.96996 * 119.99374 * 34.86187 * 15 14 13 32 32 H 0.97005 * 119.99713 * 0.02562 * 20 18 16 33 33 H 1.09007 * 109.47131 * 60.00051 * 21 20 18 34 34 H 1.08999 * 109.47259 * 300.00375 * 21 20 18 35 35 H 1.09007 * 109.46764 * 299.99966 * 22 21 20 36 36 H 1.08995 * 109.46823 * 59.99473 * 22 21 20 37 37 H 1.08998 * 115.55190 * 29.41476 * 23 22 21 38 38 H 1.08998 * 117.49796 * 0.02562 * 24 23 22 39 39 H 1.09000 * 117.49932 * 145.02044 * 24 23 22 40 40 H 1.09001 * 117.49329 * 214.97838 * 25 23 22 41 41 H 1.09004 * 117.49793 * 359.97438 * 25 23 22 42 42 H 1.07999 * 120.07261 * 0.04847 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6965 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0701 -3.5047 -0.1052 11 6 3.4579 -3.4382 -0.0949 12 6 4.2072 -4.5938 -0.2019 13 6 3.5798 -5.8198 -0.3143 14 6 2.1921 -5.8927 -0.3306 15 7 1.5580 -7.1322 -0.4492 16 6 0.4034 -7.2354 -1.1366 17 8 -0.1283 -6.2398 -1.5830 18 6 -0.2219 -8.5750 -1.3492 19 8 0.3096 -9.5705 -0.9025 20 7 -1.3762 -8.6784 -2.0371 21 6 -1.9893 -9.9924 -2.2461 22 6 -3.2805 -9.8306 -3.0507 23 6 -3.9211 -11.2030 -3.2684 24 6 -4.0370 -11.7080 -4.7080 25 6 -5.2871 -11.2438 -3.9564 26 6 1.4365 -4.7331 -0.2232 27 1 -0.4851 0.8400 -0.0004 28 1 3.9515 -2.4820 -0.0034 29 1 5.2859 -4.5392 -0.1932 30 1 4.1684 -6.7218 -0.3937 31 1 1.9489 -7.9182 -0.0367 32 1 -1.8008 -7.8828 -2.3944 33 1 -2.2165 -10.4450 -1.2808 34 1 -1.2980 -10.6328 -2.7939 35 1 -3.9720 -9.1901 -2.5032 36 1 -3.0529 -9.3782 -4.0159 37 1 -3.7272 -11.9411 -2.4902 38 1 -3.6565 -11.0629 -5.4999 39 1 -3.9198 -12.7785 -4.8768 40 1 -5.9917 -12.0091 -3.6309 41 1 -5.7296 -10.2930 -4.2535 42 1 0.3579 -4.7872 -0.2319 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076602251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:31 Heat of formation + Delta-G solvation = -66.622397 kcal Electronic energy + Delta-G solvation = -24920.961417 eV Core-core repulsion = 21059.893727 eV Total energy + Delta-G solvation = -3861.067690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16049 -40.81469 -39.87858 -38.61155 -38.27789 -36.40698 -35.44631 -34.25722 -31.58612 -31.23224 -30.24720 -27.41759 -26.61295 -24.40562 -23.45385 -23.19375 -22.81789 -21.89525 -21.10414 -20.14739 -19.70462 -18.85646 -17.98596 -17.31480 -16.98861 -16.77794 -16.77447 -16.47960 -16.10893 -15.90330 -15.74598 -15.50908 -15.23577 -14.82557 -14.66515 -14.36503 -14.28637 -13.60320 -13.24775 -13.18791 -13.10550 -12.79386 -12.73830 -12.66597 -12.38863 -12.34089 -12.26950 -12.15746 -11.41804 -11.33889 -11.17314 -10.84230 -10.76739 -10.70173 -10.37516 -9.42674 -8.94300 -8.45821 -6.15262 -0.03987 0.60030 0.69260 1.15552 1.36181 1.47642 1.53142 1.99607 2.18168 2.46668 2.81181 2.90121 3.15539 3.22015 3.55412 3.65867 3.93724 4.01189 4.11667 4.20988 4.28361 4.34414 4.37467 4.50075 4.59423 4.61706 4.69721 4.82143 4.87958 4.95496 5.03459 5.07168 5.10821 5.11690 5.27202 5.28389 5.35932 5.37118 5.60723 5.71078 5.82171 6.02813 6.12457 6.22552 6.62456 6.81043 6.97809 7.78777 8.77401 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.002308 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.445573 B =12128.970709 C =13553.728519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.231 6.231 10 C 0.127 3.873 11 C -0.248 4.248 12 C -0.047 4.047 13 C -0.199 4.199 14 C 0.173 3.827 15 N -0.627 5.627 16 C 0.497 3.503 17 O -0.525 6.525 18 C 0.522 3.478 19 O -0.533 6.533 20 N -0.689 5.689 21 C 0.121 3.879 22 C -0.097 4.097 23 C -0.156 4.156 24 C -0.183 4.183 25 C -0.181 4.181 26 C -0.208 4.208 27 H 0.272 0.728 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.434 0.566 32 H 0.419 0.581 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -22.180 -6.024 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.138 6.138 10 C 0.076 3.924 11 C -0.268 4.268 12 C -0.065 4.065 13 C -0.220 4.220 14 C 0.080 3.920 15 N -0.274 5.274 16 C 0.279 3.721 17 O -0.400 6.400 18 C 0.301 3.699 19 O -0.410 6.410 20 N -0.342 5.342 21 C -0.001 4.001 22 C -0.134 4.134 23 C -0.175 4.175 24 C -0.219 4.219 25 C -0.218 4.218 26 C -0.230 4.230 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.275 0.725 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.096 -22.089 -6.034 22.994 hybrid contribution -0.217 1.012 0.085 1.038 sum -2.312 -21.077 -5.949 22.022 Atomic orbital electron populations 1.70207 1.08208 1.28877 1.48768 1.26689 0.96872 1.02974 0.95817 0.84601 0.77316 0.73914 0.80067 1.18039 1.19858 1.17833 1.21871 0.92730 0.81196 1.53215 0.87520 1.83957 1.36092 1.12608 1.81126 1.19630 0.91714 0.87408 0.93689 1.21391 0.92511 1.00849 1.12048 1.21046 1.00722 0.90184 0.94581 1.20915 0.90847 0.99673 1.10519 1.17305 0.91931 0.83318 0.99481 1.42931 1.22958 1.10270 1.51284 1.20674 0.82053 0.90153 0.79213 1.90869 1.61477 1.38887 1.48754 1.19543 0.82514 0.87775 0.80020 1.90758 1.62779 1.37730 1.49731 1.45836 1.22497 1.12637 1.53238 1.21638 0.94800 0.82494 1.01189 1.21343 0.94741 0.96642 1.00721 1.22162 1.00546 0.97963 0.96824 1.23156 1.02196 1.02116 0.94481 1.23065 0.90944 1.03567 1.04180 1.20171 0.99816 0.90348 1.12615 0.91872 0.85536 0.81989 0.82014 0.72512 0.74395 0.90471 0.90434 0.90219 0.90430 0.86895 0.88628 0.88139 0.88035 0.88617 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.01 13.67 21.61 0.30 -57.72 16 2 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 3 Si 1.02 43.14 29.55 68.60 2.03 45.16 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.41 -24.45 9.49 67.92 0.64 -23.80 16 8 H 0.11 5.65 5.20 -2.91 -0.02 5.63 16 9 O -0.23 -14.44 9.76 -22.81 -0.22 -14.66 16 10 C 0.13 6.56 6.64 22.56 0.15 6.71 16 11 C -0.25 -10.63 9.17 22.42 0.21 -10.42 16 12 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 13 C -0.20 -5.94 9.96 22.43 0.22 -5.72 16 14 C 0.17 6.24 6.29 38.20 0.24 6.48 16 15 N -0.63 -18.37 5.32 -304.89 -1.62 -20.00 16 16 C 0.50 15.53 7.73 87.24 0.67 16.20 16 17 O -0.52 -20.45 13.91 -3.33 -0.05 -20.50 16 18 C 0.52 13.28 7.89 87.24 0.69 13.97 16 19 O -0.53 -14.50 16.48 -3.29 -0.05 -14.55 16 20 N -0.69 -13.71 5.55 -464.51 -2.58 -16.28 16 21 C 0.12 1.78 5.63 86.38 0.49 2.27 16 22 C -0.10 -1.10 5.61 30.60 0.17 -0.92 16 23 C -0.16 -1.63 5.73 -10.79 -0.06 -1.69 16 24 C -0.18 -1.82 10.18 30.62 0.31 -1.51 16 25 C -0.18 -1.80 10.25 30.62 0.31 -1.48 16 26 C -0.21 -9.76 8.64 22.52 0.19 -9.57 16 27 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.13 5.39 5.63 -2.91 -0.02 5.37 16 29 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.43 9.79 8.30 -92.71 -0.77 9.03 16 32 H 0.42 7.96 7.94 -92.70 -0.74 7.23 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 36 H 0.08 0.85 7.88 -2.39 -0.02 0.83 16 37 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 38 H 0.10 0.95 8.03 -2.39 -0.02 0.93 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.11 5.55 6.23 -2.91 -0.02 5.53 16 Total: -1.00 -78.46 364.85 2.31 -76.15 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.43 Total: 34.20 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.93 Total: -11.80 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.90 Total: -94.00 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.32 Total: -49.71 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -78.46 2.31 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076602251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.529 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds