Wall clock time and date at job start Tue Mar 31 2020 13:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38407 * 119.84613 * 2 1 4 4 C 1.37909 * 120.15615 * 179.72398 * 3 2 1 5 5 C 1.39690 * 119.83932 * 0.57660 * 4 3 2 6 6 C 1.47702 * 120.14759 * 179.67716 * 5 4 3 7 7 O 1.21468 * 119.99653 * 152.86895 * 6 5 4 8 8 N 1.34778 * 120.00021 * 332.87267 * 6 5 4 9 9 C 1.33329 * 119.99924 * 0.19844 * 8 6 5 10 10 H 1.07997 * 119.99898 * 310.03055 * 9 8 6 11 11 C 1.46784 * 119.99931 * 130.04084 * 9 8 6 12 12 N 1.29314 * 119.99988 * 170.18501 * 11 9 8 13 13 Si 1.86796 * 119.99768 * 350.18458 * 11 9 8 14 14 H 1.48503 * 109.47437 * 83.74851 * 13 11 9 15 15 H 1.48505 * 109.47052 * 203.74107 * 13 11 9 16 16 H 1.48503 * 109.47456 * 323.74431 * 13 11 9 17 17 C 1.46503 * 119.99673 * 180.19886 * 8 6 5 18 18 C 1.54266 * 110.03306 * 65.80265 * 17 8 6 19 19 C 1.54969 * 104.15591 * 217.13737 * 18 17 8 20 20 C 1.54889 * 102.77989 * 37.88886 * 19 18 17 21 21 C 1.53880 * 110.02923 * 308.58254 * 17 8 6 22 22 C 1.39644 * 119.70016 * 359.70173 * 5 4 3 23 23 C 1.37950 * 119.84189 * 359.97438 * 22 5 4 24 24 N 1.48015 * 119.92164 * 179.97438 * 23 22 5 25 25 O 1.31692 * 120.00259 * 359.72721 * 24 23 22 26 26 O 1.31704 * 119.99887 * 179.72431 * 24 23 22 27 27 H 1.09004 * 109.46796 * 260.34457 * 1 2 3 28 28 H 1.09003 * 109.47503 * 140.35259 * 1 2 3 29 29 H 1.08998 * 109.47636 * 20.34709 * 1 2 3 30 30 H 1.07997 * 119.92136 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.08067 * 180.27605 * 4 3 2 32 32 H 0.97001 * 119.99986 * 179.97438 * 12 11 9 33 33 H 1.09000 * 110.01316 * 187.19471 * 17 8 6 34 34 H 1.09005 * 110.48738 * 335.77909 * 18 17 8 35 35 H 1.08993 * 110.48803 * 98.42828 * 18 17 8 36 36 H 1.09003 * 110.71760 * 279.57174 * 19 18 17 37 37 H 1.08999 * 110.92012 * 156.30001 * 19 18 17 38 38 H 1.09003 * 110.48438 * 203.40567 * 20 19 18 39 39 H 1.09000 * 110.60021 * 80.81865 * 20 19 18 40 40 H 1.08999 * 110.03014 * 238.56650 * 21 17 8 41 41 H 1.08998 * 110.03355 * 359.95434 * 21 17 8 42 42 H 1.07998 * 120.08278 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2005 0.0000 4 6 3.5748 1.2080 0.0057 5 6 4.2765 0.0001 -0.0006 6 6 5.7535 0.0002 -0.0017 7 8 6.3612 -0.9383 0.4730 8 7 6.4269 1.0416 -0.5294 9 6 5.7598 2.0735 -1.0469 10 1 4.9662 1.9012 -1.7587 11 6 6.1042 3.4438 -0.6491 12 7 5.5950 4.4487 -1.2841 13 14 7.2781 3.7361 0.7742 14 1 8.6782 3.6493 0.2871 15 1 7.0360 5.0848 1.3466 16 1 7.0533 2.7066 1.8207 17 6 7.8919 1.0396 -0.5344 18 6 8.4158 -0.0866 -1.4493 19 6 9.6728 -0.6177 -0.7149 20 6 9.2517 -0.5548 0.7743 21 6 8.4234 0.7425 0.8788 22 6 3.5751 -1.2074 -0.0065 23 6 2.1956 -1.2001 -0.0054 24 7 1.4504 -2.4789 -0.0121 25 8 2.1043 -3.6220 -0.0246 26 8 0.1334 -2.4737 -0.0056 27 1 -0.3633 -0.1724 1.0132 28 1 -0.3634 -0.7913 -0.6557 29 1 -0.3634 0.9635 -0.3573 30 1 1.6520 2.1336 0.0004 31 1 4.1111 2.1454 0.0102 32 1 5.8223 5.3543 -1.0210 33 1 8.2651 2.0042 -0.8785 34 1 7.6702 -0.8756 -1.5482 35 1 8.6842 0.3108 -2.4280 36 1 10.5304 0.0288 -0.9015 37 1 9.8924 -1.6433 -1.0113 38 1 10.1302 -0.4992 1.4172 39 1 8.6418 -1.4191 1.0373 40 1 9.0553 1.5624 1.2201 41 1 7.5913 0.6006 1.5685 42 1 4.1113 -2.1449 -0.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:33 Heat of formation + Delta-G solvation = 31.082116 kcal Electronic energy + Delta-G solvation = -27573.802653 eV Core-core repulsion = 23716.971749 eV Total energy + Delta-G solvation = -3856.830904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.47975 -39.45859 -37.86184 -36.38103 -34.84444 -34.37880 -32.59608 -32.41186 -31.43760 -28.29287 -28.08066 -27.37870 -25.70505 -24.85217 -22.50197 -21.98556 -20.67277 -20.32628 -19.23862 -18.61720 -17.80530 -17.01503 -16.03519 -15.87215 -15.63465 -15.46305 -15.02995 -14.79827 -14.34207 -14.20168 -13.78635 -13.70803 -13.53528 -12.95417 -12.76820 -12.71331 -12.57056 -11.99876 -11.79433 -11.64215 -11.54813 -11.27023 -11.04282 -10.96178 -10.91397 -10.65498 -10.59439 -10.50867 -10.24810 -10.13561 -10.07534 -10.03096 -9.43899 -9.16699 -8.91606 -8.72530 -7.96893 -6.89568 -4.40129 -0.36426 1.01123 1.41037 1.49591 2.81514 2.96690 3.02017 3.22219 3.78423 3.94032 4.08918 4.45701 4.55420 4.69179 5.06106 5.12429 5.17021 5.25484 5.31411 5.35251 5.47777 5.63210 5.64382 5.80184 5.85578 5.93438 5.98732 6.04810 6.06982 6.11725 6.16771 6.29433 6.31460 6.36921 6.46077 6.48701 6.59074 6.70302 6.77939 6.87310 6.90735 7.03703 7.07059 7.73587 7.93974 8.45483 9.04102 9.51087 10.10778 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005101 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.810166 B = 5488.198797 C = 6955.431746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.002 4.002 5 C -0.105 4.105 6 C 0.514 3.486 7 O -0.574 6.574 8 N -0.424 5.424 9 C -0.401 4.401 10 H 0.102 0.898 11 C 0.078 3.922 12 N -0.817 5.817 13 Si 0.874 3.126 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.248 1.248 17 C 0.124 3.876 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.013 4.013 23 C -0.031 4.031 24 N -0.002 5.002 25 O -0.194 6.194 26 O -0.189 6.189 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.195 0.805 32 H 0.287 0.713 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.060 -0.845 2.147 2.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.008 4.008 3 C -0.167 4.167 4 C -0.020 4.020 5 C -0.109 4.109 6 C 0.304 3.696 7 O -0.459 6.459 8 N -0.141 5.141 9 C -0.529 4.529 10 H 0.119 0.881 11 C -0.140 4.140 12 N -0.446 5.446 13 Si 0.699 3.301 14 H -0.190 1.190 15 H -0.211 1.211 16 H -0.172 1.172 17 C 0.021 3.979 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.171 4.171 22 C -0.033 4.033 23 C -0.119 4.119 24 N 0.470 4.530 25 O -0.383 6.383 26 O -0.378 6.378 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.212 0.788 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.457 -0.527 2.324 2.427 hybrid contribution 0.327 0.158 0.401 0.541 sum -0.130 -0.369 2.725 2.753 Atomic orbital electron populations 1.21416 0.88957 1.04337 1.04356 1.20090 0.97774 0.90630 0.92258 1.21292 0.94679 0.96521 1.04188 1.23445 0.93411 1.01975 0.83130 1.20048 0.95490 0.91778 1.03580 1.18041 0.85731 0.85150 0.80666 1.90631 1.69002 1.37147 1.49115 1.42375 1.03599 1.17604 1.50565 1.19805 1.22174 0.83080 1.27858 0.88086 1.27188 0.95620 0.95156 0.96048 1.68669 1.38800 1.00200 1.36908 0.87032 0.81411 0.78373 0.83317 1.18957 1.21080 1.17191 1.22089 0.82237 0.98925 0.94625 1.22629 0.97328 0.98455 0.97796 1.22421 0.97231 1.00160 0.95994 1.22230 0.98259 0.98829 0.95655 1.22571 0.99839 0.96985 0.97712 1.21090 0.90229 1.00672 0.91345 1.19974 0.91413 0.80857 1.19656 1.50437 1.02768 1.04266 0.95505 1.96268 1.69079 1.16162 1.56745 1.96135 0.89655 1.95748 1.56291 0.89768 0.87999 0.90995 0.83586 0.78836 0.90063 0.89530 0.90746 0.92167 0.92324 0.92092 0.93115 0.90278 0.93201 0.90420 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.62 36.00 0.31 -1.32 16 2 C -0.01 -0.08 5.89 -104.52 -0.62 -0.70 16 3 C -0.15 -2.16 9.65 -39.64 -0.38 -2.54 16 4 C 0.00 -0.03 8.01 -39.16 -0.31 -0.34 16 5 C -0.11 -1.99 5.61 -104.96 -0.59 -2.58 16 6 C 0.51 10.79 6.26 -12.39 -0.08 10.71 16 7 O -0.57 -12.69 12.52 5.39 0.07 -12.62 16 8 N -0.42 -8.93 1.97 -106.11 -0.21 -9.14 16 9 C -0.40 -8.81 6.42 -13.45 -0.09 -8.89 16 10 H 0.10 2.37 7.03 -52.49 -0.37 2.00 16 11 C 0.08 1.72 5.05 -15.16 -0.08 1.64 16 12 N -0.82 -18.73 13.88 56.00 0.78 -17.96 16 13 Si 0.87 17.52 23.49 -169.99 -3.99 13.53 16 14 H -0.26 -5.21 6.67 56.52 0.38 -4.83 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.25 -5.04 6.14 56.52 0.35 -4.70 16 17 C 0.12 2.45 2.05 -66.81 -0.14 2.31 16 18 C -0.12 -2.20 6.15 -25.03 -0.15 -2.36 16 19 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 20 C -0.11 -1.85 6.41 -25.07 -0.16 -2.01 16 21 C -0.13 -2.49 3.84 -25.61 -0.10 -2.58 16 22 C -0.01 -0.23 9.12 -39.16 -0.36 -0.59 16 23 C -0.03 -0.54 6.87 -80.01 -0.55 -1.09 16 24 N 0.00 -0.03 4.98 33.93 0.17 0.14 16 25 O -0.19 -3.75 19.14 -31.56 -0.60 -4.35 16 26 O -0.19 -3.28 15.88 -31.57 -0.50 -3.78 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.33 5.69 -51.93 -0.30 1.03 16 29 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 30 H 0.15 1.72 8.03 -52.49 -0.42 1.30 16 31 H 0.20 3.66 4.83 -52.49 -0.25 3.41 16 32 H 0.29 6.13 8.26 -40.82 -0.34 5.80 16 33 H 0.09 1.75 5.50 -51.93 -0.29 1.47 16 34 H 0.07 1.45 6.81 -51.93 -0.35 1.09 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.42 7.13 -51.93 -0.37 1.05 16 40 H 0.05 0.88 6.86 -51.93 -0.36 0.52 16 41 H 0.08 1.61 6.07 -51.93 -0.32 1.29 16 42 H 0.16 2.86 7.40 -52.49 -0.39 2.47 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -24.47 330.95 -7.91 -32.38 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.15 Total: 9.15 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.46 Total: -12.34 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.74 Total: -26.96 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.04 Total: -20.75 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -3.99 Total: 13.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -24.47 -7.91 -32.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.461 kcal (2) G-P(sol) polarization free energy of solvation -24.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds