Wall clock time and date at job start Tue Mar 31 2020 13:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38407 * 119.84613 * 2 1 4 4 C 1.37909 * 120.15615 * 179.72398 * 3 2 1 5 5 C 1.39690 * 119.83932 * 0.57660 * 4 3 2 6 6 C 1.47702 * 120.14759 * 179.67716 * 5 4 3 7 7 O 1.21468 * 119.99653 * 152.86895 * 6 5 4 8 8 N 1.34778 * 120.00021 * 332.87267 * 6 5 4 9 9 C 1.33329 * 119.99924 * 0.19844 * 8 6 5 10 10 H 1.07997 * 119.99898 * 310.03055 * 9 8 6 11 11 C 1.46784 * 119.99931 * 130.04084 * 9 8 6 12 12 N 1.29314 * 119.99988 * 170.18501 * 11 9 8 13 13 Si 1.86796 * 119.99768 * 350.18458 * 11 9 8 14 14 H 1.48503 * 109.47437 * 83.74851 * 13 11 9 15 15 H 1.48505 * 109.47052 * 203.74107 * 13 11 9 16 16 H 1.48503 * 109.47456 * 323.74431 * 13 11 9 17 17 C 1.46503 * 119.99673 * 180.19886 * 8 6 5 18 18 C 1.54266 * 110.03306 * 65.80265 * 17 8 6 19 19 C 1.54969 * 104.15591 * 217.13737 * 18 17 8 20 20 C 1.54889 * 102.77989 * 37.88886 * 19 18 17 21 21 C 1.53880 * 110.02923 * 308.58254 * 17 8 6 22 22 C 1.39644 * 119.70016 * 359.70173 * 5 4 3 23 23 C 1.37950 * 119.84189 * 359.97438 * 22 5 4 24 24 N 1.48015 * 119.92164 * 179.97438 * 23 22 5 25 25 O 1.31692 * 120.00259 * 359.72721 * 24 23 22 26 26 O 1.31704 * 119.99887 * 179.72431 * 24 23 22 27 27 H 1.09004 * 109.46796 * 260.34457 * 1 2 3 28 28 H 1.09003 * 109.47503 * 140.35259 * 1 2 3 29 29 H 1.08998 * 109.47636 * 20.34709 * 1 2 3 30 30 H 1.07997 * 119.92136 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.08067 * 180.27605 * 4 3 2 32 32 H 0.97001 * 119.99986 * 179.97438 * 12 11 9 33 33 H 1.09000 * 110.01316 * 187.19471 * 17 8 6 34 34 H 1.09005 * 110.48738 * 335.77909 * 18 17 8 35 35 H 1.08993 * 110.48803 * 98.42828 * 18 17 8 36 36 H 1.09003 * 110.71760 * 279.57174 * 19 18 17 37 37 H 1.08999 * 110.92012 * 156.30001 * 19 18 17 38 38 H 1.09003 * 110.48438 * 203.40567 * 20 19 18 39 39 H 1.09000 * 110.60021 * 80.81865 * 20 19 18 40 40 H 1.08999 * 110.03014 * 238.56650 * 21 17 8 41 41 H 1.08998 * 110.03355 * 359.95434 * 21 17 8 42 42 H 1.07998 * 120.08278 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2005 0.0000 4 6 3.5748 1.2080 0.0057 5 6 4.2765 0.0001 -0.0006 6 6 5.7535 0.0002 -0.0017 7 8 6.3612 -0.9383 0.4730 8 7 6.4269 1.0416 -0.5294 9 6 5.7598 2.0735 -1.0469 10 1 4.9662 1.9012 -1.7587 11 6 6.1042 3.4438 -0.6491 12 7 5.5950 4.4487 -1.2841 13 14 7.2781 3.7361 0.7742 14 1 8.6782 3.6493 0.2871 15 1 7.0360 5.0848 1.3466 16 1 7.0533 2.7066 1.8207 17 6 7.8919 1.0396 -0.5344 18 6 8.4158 -0.0866 -1.4493 19 6 9.6728 -0.6177 -0.7149 20 6 9.2517 -0.5548 0.7743 21 6 8.4234 0.7425 0.8788 22 6 3.5751 -1.2074 -0.0065 23 6 2.1956 -1.2001 -0.0054 24 7 1.4504 -2.4789 -0.0121 25 8 2.1043 -3.6220 -0.0246 26 8 0.1334 -2.4737 -0.0056 27 1 -0.3633 -0.1724 1.0132 28 1 -0.3634 -0.7913 -0.6557 29 1 -0.3634 0.9635 -0.3573 30 1 1.6520 2.1336 0.0004 31 1 4.1111 2.1454 0.0102 32 1 5.8223 5.3543 -1.0210 33 1 8.2651 2.0042 -0.8785 34 1 7.6702 -0.8756 -1.5482 35 1 8.6842 0.3108 -2.4280 36 1 10.5304 0.0288 -0.9015 37 1 9.8924 -1.6433 -1.0113 38 1 10.1302 -0.4992 1.4172 39 1 8.6418 -1.4191 1.0373 40 1 9.0553 1.5624 1.2201 41 1 7.5913 0.6006 1.5685 42 1 4.1113 -2.1449 -0.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:32 Heat of formation + Delta-G solvation = 20.157397 kcal Electronic energy + Delta-G solvation = -27574.276384 eV Core-core repulsion = 23716.971749 eV Total energy + Delta-G solvation = -3857.304635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95722 -40.92967 -39.27519 -37.88187 -36.45872 -35.79503 -34.23083 -33.79337 -32.80162 -29.69409 -29.39878 -28.78787 -27.14189 -26.44688 -23.84154 -23.38394 -22.15638 -21.67449 -20.81712 -20.18010 -19.22263 -18.55949 -17.57767 -17.28835 -17.14963 -16.85130 -16.48528 -16.21115 -15.92802 -15.66214 -15.28748 -15.03908 -14.71065 -14.48068 -14.27074 -14.14896 -13.77069 -13.31405 -13.26755 -13.12392 -12.95088 -12.74262 -12.55152 -12.37685 -12.36713 -12.17862 -11.94603 -11.90737 -11.67610 -11.57893 -11.55699 -11.39050 -11.10227 -10.55013 -10.53407 -10.08616 -9.62833 -8.60407 -6.12843 -1.77953 -0.35602 0.01186 0.12034 1.20527 1.33565 1.40475 1.75281 2.13977 2.41104 2.52571 2.82611 3.27951 3.41625 3.70448 3.75554 3.77330 3.89168 3.91733 3.98088 4.10899 4.38688 4.47102 4.52317 4.55236 4.62826 4.65913 4.68302 4.75151 4.81872 4.84680 4.91816 5.06272 5.10846 5.12163 5.20646 5.23276 5.24397 5.30906 5.44069 5.52970 5.54325 5.68886 6.04120 6.21221 6.75142 7.37376 7.84673 8.42603 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005101 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.810166 B = 5488.198797 C = 6955.431746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.126 4.126 6 C 0.507 3.493 7 O -0.592 6.592 8 N -0.430 5.430 9 C -0.399 4.399 10 H 0.081 0.919 11 C 0.059 3.941 12 N -0.843 5.843 13 Si 0.909 3.091 14 H -0.256 1.256 15 H -0.280 1.280 16 H -0.257 1.257 17 C 0.115 3.885 18 C -0.123 4.123 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.132 4.132 22 C -0.017 4.017 23 C -0.041 4.041 24 N -0.002 5.002 25 O -0.256 6.256 26 O -0.143 6.143 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.293 0.707 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 0.350 2.496 3.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 C -0.150 4.150 4 C -0.023 4.023 5 C -0.130 4.130 6 C 0.298 3.702 7 O -0.478 6.478 8 N -0.147 5.147 9 C -0.527 4.527 10 H 0.098 0.902 11 C -0.157 4.157 12 N -0.473 5.473 13 Si 0.733 3.267 14 H -0.181 1.181 15 H -0.206 1.206 16 H -0.181 1.181 17 C 0.012 3.988 18 C -0.162 4.162 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.170 4.170 22 C -0.038 4.038 23 C -0.128 4.128 24 N 0.468 4.532 25 O -0.429 6.429 26 O -0.346 6.346 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.203 0.797 31 H 0.197 0.803 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.086 0.572 2.664 2.934 hybrid contribution 0.332 -0.147 0.279 0.458 sum -0.753 0.425 2.943 3.068 Atomic orbital electron populations 1.21546 0.86133 1.06173 1.05136 1.20514 0.99585 0.89386 0.89668 1.21621 0.93343 0.97943 1.02049 1.23274 0.94842 1.00470 0.83692 1.19941 0.94576 0.92786 1.05669 1.18402 0.86787 0.84817 0.80187 1.90603 1.69754 1.37642 1.49831 1.42438 1.04281 1.17406 1.50580 1.19567 1.22192 0.83559 1.27383 0.90177 1.27468 0.96395 0.94793 0.97039 1.68695 1.39952 1.00671 1.37961 0.86484 0.80780 0.78028 0.81399 1.18051 1.20575 1.18115 1.22237 0.81513 0.99288 0.95753 1.22604 0.97999 0.97217 0.98353 1.22419 0.96538 1.01486 0.94415 1.22196 0.98558 0.96680 0.97185 1.22546 0.99433 0.98618 0.96406 1.20924 0.91021 0.99841 0.92019 1.20142 0.91128 0.81254 1.20319 1.50531 1.02757 1.04493 0.95407 1.96295 1.69196 1.16577 1.60809 1.96098 0.89764 1.95768 1.53020 0.88196 0.88611 0.87592 0.79715 0.80271 0.89492 0.90103 0.93138 0.91207 0.89962 0.90598 0.90359 0.92380 0.92046 0.92991 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.62 71.23 0.61 -2.03 16 2 C 0.01 0.29 5.89 -19.80 -0.12 0.17 16 3 C -0.13 -3.48 9.65 22.23 0.21 -3.27 16 4 C 0.00 -0.16 8.01 22.54 0.18 0.02 16 5 C -0.13 -4.91 5.61 -20.09 -0.11 -5.02 16 6 C 0.51 22.18 6.26 86.74 0.54 22.72 16 7 O -0.59 -27.44 12.52 -3.62 -0.05 -27.48 16 8 N -0.43 -18.58 1.97 -607.95 -1.20 -19.78 16 9 C -0.40 -17.87 6.42 86.70 0.56 -17.32 16 10 H 0.08 3.89 7.03 -2.91 -0.02 3.87 16 11 C 0.06 2.61 5.05 87.30 0.44 3.05 16 12 N -0.84 -38.48 13.88 23.26 0.32 -38.16 16 13 Si 0.91 35.54 23.49 68.60 1.61 37.15 16 14 H -0.26 -9.59 6.67 99.48 0.66 -8.93 16 15 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 16 H -0.26 -10.37 6.14 99.48 0.61 -9.75 16 17 C 0.11 4.54 2.05 45.72 0.09 4.63 16 18 C -0.12 -4.38 6.15 31.70 0.19 -4.19 16 19 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 20 C -0.11 -3.47 6.41 31.67 0.20 -3.27 16 21 C -0.13 -4.90 3.84 31.32 0.12 -4.78 16 22 C -0.02 -0.65 9.12 22.54 0.21 -0.44 16 23 C -0.04 -1.36 6.87 36.34 0.25 -1.11 16 24 N 0.00 -0.07 4.98 -46.55 -0.23 -0.31 16 25 O -0.26 -10.32 19.14 3.53 0.07 -10.25 16 26 O -0.14 -4.61 15.88 3.51 0.06 -4.55 16 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.10 2.10 5.69 -2.39 -0.01 2.08 16 29 H 0.11 1.45 8.00 -2.39 -0.02 1.43 16 30 H 0.19 3.49 8.03 -2.91 -0.02 3.47 16 31 H 0.18 6.83 4.83 -2.91 -0.01 6.81 16 32 H 0.29 12.37 8.26 -92.71 -0.77 11.60 16 33 H 0.08 3.25 5.50 -2.39 -0.01 3.23 16 34 H 0.05 2.02 6.81 -2.38 -0.02 2.00 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 40 H 0.06 2.09 6.86 -2.39 -0.02 2.08 16 41 H 0.05 2.19 6.07 -2.39 -0.01 2.17 16 42 H 0.14 5.59 7.40 -2.91 -0.02 5.57 16 Total: -1.00 -54.49 330.95 5.12 -49.37 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.93 Total: 27.82 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.61 Total: -13.81 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -1.11 Total: -58.24 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: 0.08 Total: -42.29 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 1.61 Total: 37.15 kcal Total: -54.49 5.12 -49.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.526 kcal (2) G-P(sol) polarization free energy of solvation -54.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds