Wall clock time and date at job start Tue Mar 31 2020 13:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37952 * 119.92343 * 2 1 4 4 C 1.39649 * 119.84124 * 180.02562 * 3 2 1 5 5 C 1.47696 * 120.15047 * 180.02562 * 4 3 2 6 6 O 1.21472 * 119.99814 * 302.54183 * 5 4 3 7 7 N 1.34772 * 120.00377 * 122.54017 * 5 4 3 8 8 C 1.33328 * 120.00242 * 235.43044 * 7 5 4 9 9 H 1.07996 * 120.00046 * 37.97893 * 8 7 5 10 10 C 1.46783 * 120.00097 * 217.97595 * 8 7 5 11 11 N 1.29322 * 120.00006 * 346.93747 * 10 8 7 12 12 Si 1.86801 * 120.00116 * 166.93504 * 10 8 7 13 13 H 1.48497 * 109.46920 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46949 * 119.99788 * 12 10 8 15 15 H 1.48492 * 109.47125 * 239.99972 * 12 10 8 16 16 C 1.46509 * 119.99794 * 55.43312 * 7 5 4 17 17 C 1.54959 * 110.92091 * 288.72531 * 16 7 5 18 18 C 1.54273 * 104.16074 * 156.29518 * 17 16 7 19 19 C 1.53870 * 106.63730 * 336.44845 * 18 17 16 20 20 C 1.54270 * 106.60072 * 359.96910 * 19 18 17 21 21 C 1.39683 * 119.69627 * 0.27044 * 4 3 2 22 22 C 1.37911 * 119.84614 * 359.47659 * 21 4 3 23 23 C 1.38359 * 119.92036 * 180.02562 * 2 1 3 24 24 N 1.48013 * 119.84621 * 359.97438 * 23 2 1 25 25 O 1.31702 * 119.99877 * 187.19387 * 24 23 2 26 26 O 1.31700 * 120.00311 * 7.19202 * 24 23 2 27 27 H 1.09001 * 109.47146 * 97.48948 * 1 2 3 28 28 H 1.08999 * 109.47537 * 217.49427 * 1 2 3 29 29 H 1.09000 * 109.47076 * 337.48872 * 1 2 3 30 30 H 1.08001 * 120.07811 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99709 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.67308 * 165.42002 * 16 7 5 33 33 H 1.08999 * 110.47792 * 37.64374 * 17 16 7 34 34 H 1.08997 * 110.53155 * 274.97745 * 17 16 7 35 35 H 1.09003 * 110.03237 * 217.13598 * 18 17 16 36 36 H 1.08997 * 110.02824 * 95.75579 * 18 17 16 37 37 H 1.09001 * 110.03493 * 119.25960 * 19 18 17 38 38 H 1.09010 * 110.02968 * 240.64207 * 19 18 17 39 39 H 1.09001 * 110.48371 * 142.28986 * 20 19 18 40 40 H 1.08991 * 110.49004 * 264.80075 * 20 19 18 41 41 H 1.08005 * 120.07496 * 179.70245 * 21 4 3 42 42 H 1.07998 * 119.92449 * 180.24734 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1956 0.0000 4 6 3.5916 1.1936 -0.0005 5 6 4.3353 2.4697 0.0000 6 8 4.1518 3.2799 -0.8862 7 7 5.2174 2.7352 0.9838 8 6 5.0948 3.8489 1.7065 9 1 4.1146 4.2073 1.9840 10 6 6.2921 4.5877 2.1251 11 7 7.4592 4.0410 2.0190 12 14 6.1298 6.3176 2.8111 13 1 4.6979 6.7105 2.8293 14 1 6.6703 6.3544 4.1938 15 1 6.8922 7.2626 1.9563 16 6 6.3112 1.8001 1.2589 17 6 5.7773 0.5020 1.9157 18 6 6.8495 -0.5568 1.5849 19 6 7.5870 -0.0597 0.3293 20 6 6.9371 1.2840 -0.0605 21 6 4.2819 -0.0207 -0.0068 22 6 3.5812 -1.2085 -0.0015 23 6 2.1971 -1.1992 -0.0005 24 7 1.4518 -2.4780 -0.0005 25 8 2.0980 -3.6167 0.1418 26 8 0.1425 -2.4772 -0.1428 27 1 -0.3633 -0.1340 -1.0189 28 1 -0.3634 -0.8153 0.6255 29 1 -0.3633 0.9494 0.3935 30 1 1.6552 2.1310 -0.0004 31 1 8.2504 4.5292 2.2960 32 1 7.0680 2.2677 1.8886 33 1 4.8177 0.2217 1.4814 34 1 5.6864 0.6288 2.9944 35 1 6.3757 -1.5177 1.3839 36 1 7.5488 -0.6521 2.4156 37 1 8.6441 0.0870 0.5507 38 1 7.4719 -0.7799 -0.4809 39 1 7.6920 1.9818 -0.4231 40 1 6.1668 1.1303 -0.8161 41 1 5.3619 -0.0294 -0.0121 42 1 4.1136 -2.1482 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:40 Heat of formation + Delta-G solvation = 69.815559 kcal Electronic energy + Delta-G solvation = -27839.638549 eV Core-core repulsion = 23984.487253 eV Total energy + Delta-G solvation = -3855.151296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -40.99955 -39.33073 -37.66244 -37.18878 -34.62071 -34.40161 -32.86271 -32.14550 -31.51379 -28.35640 -27.78770 -27.37822 -26.40222 -24.57682 -22.72037 -22.21543 -20.91400 -19.89157 -19.17053 -18.48963 -18.02659 -17.31715 -16.51297 -16.03282 -15.81322 -15.40403 -15.25809 -14.72866 -14.31606 -14.15406 -13.87265 -13.32760 -13.28769 -13.12884 -13.08199 -12.67849 -12.55461 -12.15373 -11.81166 -11.62559 -11.49062 -11.21325 -11.09328 -11.02463 -10.84767 -10.67932 -10.67634 -10.53837 -10.51417 -10.33816 -10.19244 -9.81832 -9.34352 -9.19538 -9.02699 -8.48428 -7.82592 -6.64064 -3.99058 -0.58841 1.07844 1.15237 1.30512 2.79342 3.05786 3.08684 3.12045 3.47224 3.85804 4.33884 4.42381 4.46156 4.63153 4.90773 4.95595 5.05244 5.11349 5.17606 5.21107 5.35555 5.51251 5.58936 5.71629 5.74169 5.84062 5.91161 5.95982 5.99511 6.06994 6.10801 6.18521 6.19843 6.29063 6.36468 6.43146 6.52271 6.57251 6.64334 6.86117 6.95329 6.96413 7.46148 7.82141 8.31584 8.79463 9.00159 9.63497 10.20928 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.004590 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.381994 B = 6098.773195 C = 7162.491105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.021 4.021 3 C -0.093 4.093 4 C -0.047 4.047 5 C 0.504 3.496 6 O -0.536 6.536 7 N -0.446 5.446 8 C -0.325 4.325 9 H 0.091 0.909 10 C 0.052 3.948 11 N -0.822 5.822 12 Si 0.922 3.078 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.275 1.275 16 C 0.111 3.889 17 C -0.184 4.184 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.106 4.106 22 C -0.073 4.073 23 C -0.012 4.012 24 N -0.005 5.005 25 O -0.198 6.198 26 O -0.185 6.185 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.281 0.719 32 H 0.166 0.834 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.180 0.820 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -6.351 -0.025 6.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 C -0.112 4.112 4 C -0.052 4.052 5 C 0.295 3.705 6 O -0.415 6.415 7 N -0.163 5.163 8 C -0.453 4.453 9 H 0.109 0.891 10 C -0.161 4.161 11 N -0.455 5.455 12 Si 0.747 3.253 13 H -0.186 1.186 14 H -0.204 1.204 15 H -0.200 1.200 16 C 0.007 3.993 17 C -0.222 4.222 18 C -0.163 4.163 19 C -0.164 4.164 20 C -0.182 4.182 21 C -0.125 4.125 22 C -0.093 4.093 23 C -0.100 4.100 24 N 0.466 4.534 25 O -0.385 6.385 26 O -0.374 6.374 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.094 0.906 32 H 0.183 0.817 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.197 0.803 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.680 -5.348 -0.435 5.623 hybrid contribution -0.111 0.235 0.446 0.516 sum -1.791 -5.113 0.011 5.418 Atomic orbital electron populations 1.21326 0.88547 1.04261 1.04360 1.19753 0.97909 0.90103 0.94541 1.21079 0.92710 0.97192 1.00250 1.21359 0.94647 0.96404 0.92839 1.17768 0.85666 0.84465 0.82648 1.90619 1.68821 1.49868 1.32229 1.41758 1.25261 1.19626 1.29668 1.20229 0.92839 1.02240 1.29997 0.89144 1.27205 0.94018 0.99085 0.95831 1.68342 0.99674 1.37216 1.40301 0.85942 0.79598 0.81651 0.78100 1.18638 1.20411 1.20029 1.23277 0.92519 0.87840 0.95666 1.23995 0.99264 0.97217 1.01675 1.22113 0.98114 0.98084 0.98010 1.22135 1.00224 0.96760 0.97262 1.22921 1.00377 0.96246 0.98628 1.22189 1.03533 0.90007 0.96763 1.20915 0.90600 1.00551 0.97200 1.20234 0.91557 0.80772 1.17464 1.50417 1.02756 1.04156 0.96045 1.96248 1.69231 1.16703 1.56346 1.96164 0.90358 1.95610 1.55283 0.89470 0.88419 0.90926 0.83365 0.90605 0.81749 0.89544 0.91825 0.92408 0.91621 0.91455 0.92313 0.90945 0.92416 0.80309 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.57 36.01 0.31 -1.26 16 2 C -0.02 -0.31 5.87 -104.68 -0.61 -0.93 16 3 C -0.09 -1.49 9.40 -39.16 -0.37 -1.86 16 4 C -0.05 -0.85 5.14 -104.97 -0.54 -1.39 16 5 C 0.50 11.24 4.79 -12.40 -0.06 11.18 16 6 O -0.54 -13.72 17.74 5.39 0.10 -13.63 16 7 N -0.45 -10.17 2.57 -105.16 -0.27 -10.44 16 8 C -0.32 -7.93 9.49 -13.45 -0.13 -8.06 16 9 H 0.09 2.22 7.97 -52.49 -0.42 1.80 16 10 C 0.05 1.21 5.63 -15.16 -0.09 1.13 16 11 N -0.82 -18.91 10.27 56.00 0.57 -18.34 16 12 Si 0.92 18.26 29.66 -169.99 -5.04 13.22 16 13 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 16 C 0.11 2.22 2.77 -65.90 -0.18 2.04 16 17 C -0.18 -3.11 5.72 -25.03 -0.14 -3.26 16 18 C -0.13 -1.73 6.08 -25.61 -0.16 -1.89 16 19 C -0.13 -1.76 6.13 -25.61 -0.16 -1.92 16 20 C -0.14 -2.57 5.56 -25.07 -0.14 -2.71 16 21 C -0.11 -1.69 5.32 -39.16 -0.21 -1.90 16 22 C -0.07 -1.07 9.55 -39.64 -0.38 -1.45 16 23 C -0.01 -0.19 6.86 -79.84 -0.55 -0.74 16 24 N 0.00 -0.08 4.98 34.01 0.17 0.09 16 25 O -0.20 -3.42 19.16 -31.57 -0.60 -4.02 16 26 O -0.18 -3.02 15.94 -31.57 -0.50 -3.53 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.24 5.82 -51.93 -0.30 0.94 16 29 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 30 H 0.15 2.23 8.05 -52.49 -0.42 1.81 16 31 H 0.28 5.99 8.26 -40.82 -0.34 5.65 16 32 H 0.17 3.66 4.75 -51.94 -0.25 3.41 16 33 H 0.09 1.46 2.74 -100.37 -0.27 1.18 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.06 1.05 5.09 -51.93 -0.26 0.79 16 41 H 0.18 2.78 1.74 -52.48 -0.09 2.69 16 42 H 0.15 1.93 7.59 -52.49 -0.40 1.54 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -26.85 335.55 -8.85 -35.70 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.93 Total: 8.90 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.40 Total: -13.01 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.47 Total: -28.69 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.01 Total: -21.18 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.04 Total: 13.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.85 -8.85 -35.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.512 kcal (2) G-P(sol) polarization free energy of solvation -26.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds