Wall clock time and date at job start Tue Mar 31 2020 13:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37953 * 120.08033 * 2 1 4 4 C 1.38359 * 120.15483 * 180.24939 * 3 2 1 5 5 C 1.38408 * 120.30724 * 359.79189 * 4 3 2 6 6 N 1.48007 * 119.92244 * 179.97438 * 5 4 3 7 7 O 1.31696 * 120.00335 * 180.02562 * 6 5 4 8 8 O 1.31702 * 120.00203 * 0.02562 * 6 5 4 9 9 C 1.37911 * 120.15617 * 359.97438 * 5 4 3 10 10 C 1.39651 * 120.07926 * 179.78739 * 2 1 3 11 11 C 1.47701 * 120.14923 * 0.02562 * 10 2 1 12 12 O 1.21470 * 120.00228 * 303.36406 * 11 10 2 13 13 N 1.34781 * 119.99854 * 123.36092 * 11 10 2 14 14 C 1.33329 * 120.00122 * 181.08199 * 13 11 10 15 15 H 1.07995 * 120.00251 * 37.07594 * 14 13 11 16 16 C 1.46788 * 119.99570 * 216.81061 * 14 13 11 17 17 N 1.29312 * 120.00292 * 353.15875 * 16 14 13 18 18 Si 1.86799 * 119.99785 * 173.16799 * 16 14 13 19 19 H 1.48497 * 109.47274 * 59.99330 * 18 16 14 20 20 H 1.48500 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47032 * 299.99317 * 18 16 14 22 22 C 1.46500 * 119.99899 * 1.07250 * 13 11 10 23 23 C 1.54266 * 110.03387 * 333.47575 * 22 13 11 24 24 C 1.54963 * 104.16101 * 217.13194 * 23 22 13 25 25 C 1.54891 * 102.77440 * 37.89086 * 24 23 22 26 26 C 1.53879 * 110.03558 * 216.25797 * 22 13 11 27 27 H 1.08998 * 109.47642 * 270.33663 * 1 2 3 28 28 H 1.08996 * 109.47135 * 30.34288 * 1 2 3 29 29 H 1.09007 * 109.46901 * 150.33765 * 1 2 3 30 30 H 1.08003 * 119.91828 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.84604 * 179.76726 * 4 3 2 32 32 H 1.07999 * 120.08110 * 180.02562 * 9 5 4 33 33 H 0.97001 * 120.00375 * 184.76170 * 17 16 14 34 34 H 1.08998 * 110.01509 * 94.86531 * 22 13 11 35 35 H 1.09001 * 110.48870 * 335.78353 * 23 22 13 36 36 H 1.09002 * 110.48630 * 98.42378 * 23 22 13 37 37 H 1.08994 * 110.72452 * 279.57604 * 24 23 22 38 38 H 1.09004 * 110.92611 * 156.29177 * 24 23 22 39 39 H 1.09007 * 110.48549 * 203.40233 * 25 24 23 40 40 H 1.08996 * 110.60380 * 80.81604 * 25 24 23 41 41 H 1.08994 * 110.02912 * 238.57268 * 26 22 13 42 42 H 1.09002 * 110.02587 * 359.95519 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5820 1.1955 -0.0052 5 6 4.2820 0.0015 -0.0061 6 7 5.7620 0.0134 -0.0123 7 8 6.4297 -1.1218 -0.0136 8 8 6.4114 1.1592 -0.0164 9 6 3.6037 -1.1992 -0.0013 10 6 2.2069 -1.2084 0.0045 11 6 1.4735 -2.4905 0.0087 12 8 0.6694 -2.7274 0.8878 13 7 1.6964 -3.3975 -0.9630 14 6 1.0187 -4.5457 -0.9714 15 1 -0.0187 -4.5627 -0.6718 16 6 1.6812 -5.7858 -1.3935 17 7 2.8779 -5.7457 -1.8819 18 14 0.7954 -7.4218 -1.2253 19 1 -0.4549 -7.3923 -2.0260 20 1 1.6733 -8.5130 -1.7189 21 1 0.4634 -7.6605 0.2024 22 6 2.6832 -3.1217 -2.0101 23 6 2.8349 -1.5990 -2.2055 24 6 3.0300 -1.4304 -3.7335 25 6 2.0720 -2.4965 -4.3207 26 6 2.1988 -3.6924 -3.3546 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8869 -0.5191 29 1 -0.3633 -0.8931 -0.5086 30 1 1.6584 2.1291 0.0004 31 1 4.1182 2.1330 -0.0090 32 1 4.1511 -2.1302 -0.0016 33 1 3.2893 -6.5546 -2.2245 34 1 3.6440 -3.5613 -1.7424 35 1 1.9343 -1.0806 -1.8765 36 1 3.7071 -1.2302 -1.6657 37 1 4.0615 -1.6404 -4.0161 38 1 2.7388 -0.4305 -4.0552 39 1 2.3879 -2.7818 -5.3243 40 1 1.0475 -2.1250 -4.3355 41 1 2.9249 -4.4082 -3.7396 42 1 1.2298 -4.1752 -3.2277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:28 Heat of formation + Delta-G solvation = 58.888983 kcal Electronic energy + Delta-G solvation = -28475.366512 eV Core-core repulsion = 24619.741405 eV Total energy + Delta-G solvation = -3855.625108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.31097 -38.99401 -37.83612 -36.80370 -34.24731 -34.06680 -33.15493 -32.44269 -31.46564 -28.58128 -27.63783 -27.02418 -25.55760 -24.81525 -23.33530 -21.71968 -20.49840 -19.87385 -19.69224 -17.99874 -17.91591 -16.98810 -16.20399 -15.92059 -15.65248 -15.53291 -15.22084 -14.95033 -14.29003 -14.21839 -13.92586 -13.66102 -13.28535 -12.94404 -12.73019 -12.32821 -12.19806 -12.02450 -11.82395 -11.58138 -11.40416 -11.28078 -11.11545 -10.91689 -10.75093 -10.67881 -10.60236 -10.55791 -10.49338 -10.30701 -10.23993 -9.83013 -9.03995 -8.88526 -8.68700 -8.46886 -7.91482 -6.62493 -4.01000 -0.49166 0.95222 1.24118 1.33045 3.01327 3.10825 3.12373 3.21748 3.75781 3.92969 4.32099 4.48068 4.65184 4.70904 4.77094 4.87548 5.05107 5.12276 5.14550 5.26070 5.43725 5.53250 5.70793 5.72400 5.75542 5.78431 5.92918 5.99542 6.00843 6.07017 6.10857 6.16285 6.21055 6.33444 6.37041 6.47613 6.54992 6.63533 6.87438 6.97089 7.12444 7.27409 7.33995 7.97368 8.28575 8.91287 9.15958 9.86696 10.34678 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.005427 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.560947 B = 5157.837504 C = 5565.397295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.003 4.003 3 C -0.134 4.134 4 C -0.048 4.048 5 C -0.039 4.039 6 N -0.007 5.007 7 O -0.179 6.179 8 O -0.191 6.191 9 C 0.005 3.995 10 C -0.084 4.084 11 C 0.465 3.535 12 O -0.572 6.572 13 N -0.395 5.395 14 C -0.354 4.354 15 H 0.097 0.903 16 C 0.054 3.946 17 N -0.831 5.831 18 Si 0.925 3.075 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.146 3.854 23 C -0.170 4.170 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.098 4.098 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.280 0.720 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 9.934 -3.165 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.004 4.004 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.126 4.126 6 N 0.469 4.531 7 O -0.371 6.371 8 O -0.381 6.381 9 C -0.015 4.015 10 C -0.088 4.088 11 C 0.253 3.747 12 O -0.458 6.458 13 N -0.109 5.109 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.160 4.160 17 N -0.462 5.462 18 Si 0.750 3.250 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.192 1.192 22 C 0.043 3.957 23 C -0.206 4.206 24 C -0.161 4.161 25 C -0.169 4.169 26 C -0.136 4.136 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.229 9.611 -2.811 10.259 hybrid contribution 0.470 -0.808 -0.141 0.945 sum -1.759 8.803 -2.953 9.450 Atomic orbital electron populations 1.20929 0.89295 1.03469 1.03858 1.20461 0.97651 0.91451 0.90844 1.20902 0.92202 0.98420 1.03799 1.20995 0.94495 0.96680 0.94631 1.20082 0.76432 0.96695 1.19428 1.50426 1.04632 1.02535 0.95536 1.96302 1.69329 1.15604 1.55901 1.96225 1.70869 1.14528 1.56526 1.20985 0.94285 0.97563 0.88685 1.20266 0.91903 0.96457 1.00200 1.17554 0.88262 0.84695 0.84177 1.90616 1.38687 1.78730 1.37758 1.42504 1.34115 1.15238 1.19059 1.20040 0.95496 0.82548 1.50201 0.88507 1.27033 0.94395 0.99643 0.94947 1.68903 1.13891 1.30863 1.32543 0.86036 0.79290 0.79965 0.79696 1.19471 1.20766 1.19227 1.21818 0.94240 0.90181 0.89464 1.24724 0.99748 0.99363 0.96729 1.22539 0.99768 0.98486 0.95327 1.22507 0.98490 0.96998 0.98861 1.22187 1.03717 0.95618 0.92054 0.89375 0.91141 0.89978 0.83577 0.83177 0.82457 0.90788 0.89608 0.89907 0.90675 0.91796 0.92478 0.92633 0.92592 0.90914 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.19 36.00 0.33 -1.26 16 2 C 0.00 -0.04 4.78 -104.20 -0.50 -0.54 16 3 C -0.13 -1.56 9.69 -39.64 -0.38 -1.94 16 4 C -0.05 -0.62 9.57 -39.47 -0.38 -1.00 16 5 C -0.04 -0.62 6.08 -80.01 -0.49 -1.11 16 6 N -0.01 -0.12 4.98 33.93 0.17 0.05 16 7 O -0.18 -3.47 19.14 -31.57 -0.60 -4.07 16 8 O -0.19 -3.35 19.14 -31.57 -0.60 -3.95 16 9 C 0.00 0.08 5.23 -39.16 -0.20 -0.12 16 10 C -0.08 -1.51 2.97 -104.96 -0.31 -1.82 16 11 C 0.46 10.44 5.64 -12.39 -0.07 10.37 16 12 O -0.57 -14.67 16.06 5.39 0.09 -14.59 16 13 N -0.39 -9.12 2.84 -106.12 -0.30 -9.42 16 14 C -0.35 -8.84 7.76 -13.45 -0.10 -8.95 16 15 H 0.10 2.55 7.76 -52.49 -0.41 2.15 16 16 C 0.05 1.28 4.72 -15.16 -0.07 1.20 16 17 N -0.83 -19.41 9.19 56.00 0.51 -18.90 16 18 Si 0.92 18.94 29.65 -169.99 -5.04 13.90 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C 0.15 2.99 2.07 -66.81 -0.14 2.85 16 23 C -0.17 -2.91 4.08 -25.03 -0.10 -3.01 16 24 C -0.12 -1.88 6.91 -24.70 -0.17 -2.06 16 25 C -0.13 -2.09 6.83 -25.07 -0.17 -2.26 16 26 C -0.10 -1.91 4.73 -25.61 -0.12 -2.03 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.08 1.32 6.91 -51.92 -0.36 0.96 16 30 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.15 1.60 7.57 -52.49 -0.40 1.20 16 32 H 0.16 2.96 7.02 -52.49 -0.37 2.59 16 33 H 0.28 6.20 8.27 -40.82 -0.34 5.86 16 34 H 0.09 1.94 7.07 -51.93 -0.37 1.57 16 35 H 0.08 1.43 4.60 -51.93 -0.24 1.19 16 36 H 0.08 1.29 3.54 -82.90 -0.29 1.00 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.47 7.19 -51.93 -0.37 1.10 16 42 H 0.08 1.83 6.03 -51.93 -0.31 1.52 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -27.75 335.41 -8.81 -36.56 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.21 Total: 7.02 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.88 Total: -11.66 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.38 Total: -28.26 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.12 Total: -22.61 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.04 Total: 13.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.75 -8.81 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.450 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds