Wall clock time and date at job start Tue Mar 31 2020 13:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37953 * 120.08033 * 2 1 4 4 C 1.38359 * 120.15483 * 180.24939 * 3 2 1 5 5 C 1.38408 * 120.30724 * 359.79189 * 4 3 2 6 6 N 1.48007 * 119.92244 * 179.97438 * 5 4 3 7 7 O 1.31696 * 120.00335 * 180.02562 * 6 5 4 8 8 O 1.31702 * 120.00203 * 0.02562 * 6 5 4 9 9 C 1.37911 * 120.15617 * 359.97438 * 5 4 3 10 10 C 1.39651 * 120.07926 * 179.78739 * 2 1 3 11 11 C 1.47701 * 120.14923 * 0.02562 * 10 2 1 12 12 O 1.21470 * 120.00228 * 303.36406 * 11 10 2 13 13 N 1.34781 * 119.99854 * 123.36092 * 11 10 2 14 14 C 1.33329 * 120.00122 * 181.08199 * 13 11 10 15 15 H 1.07995 * 120.00251 * 37.07594 * 14 13 11 16 16 C 1.46788 * 119.99570 * 216.81061 * 14 13 11 17 17 N 1.29312 * 120.00292 * 353.15875 * 16 14 13 18 18 Si 1.86799 * 119.99785 * 173.16799 * 16 14 13 19 19 H 1.48497 * 109.47274 * 59.99330 * 18 16 14 20 20 H 1.48500 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47032 * 299.99317 * 18 16 14 22 22 C 1.46500 * 119.99899 * 1.07250 * 13 11 10 23 23 C 1.54266 * 110.03387 * 333.47575 * 22 13 11 24 24 C 1.54963 * 104.16101 * 217.13194 * 23 22 13 25 25 C 1.54891 * 102.77440 * 37.89086 * 24 23 22 26 26 C 1.53879 * 110.03558 * 216.25797 * 22 13 11 27 27 H 1.08998 * 109.47642 * 270.33663 * 1 2 3 28 28 H 1.08996 * 109.47135 * 30.34288 * 1 2 3 29 29 H 1.09007 * 109.46901 * 150.33765 * 1 2 3 30 30 H 1.08003 * 119.91828 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.84604 * 179.76726 * 4 3 2 32 32 H 1.07999 * 120.08110 * 180.02562 * 9 5 4 33 33 H 0.97001 * 120.00375 * 184.76170 * 17 16 14 34 34 H 1.08998 * 110.01509 * 94.86531 * 22 13 11 35 35 H 1.09001 * 110.48870 * 335.78353 * 23 22 13 36 36 H 1.09002 * 110.48630 * 98.42378 * 23 22 13 37 37 H 1.08994 * 110.72452 * 279.57604 * 24 23 22 38 38 H 1.09004 * 110.92611 * 156.29177 * 24 23 22 39 39 H 1.09007 * 110.48549 * 203.40233 * 25 24 23 40 40 H 1.08996 * 110.60380 * 80.81604 * 25 24 23 41 41 H 1.08994 * 110.02912 * 238.57268 * 26 22 13 42 42 H 1.09002 * 110.02587 * 359.95519 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5820 1.1955 -0.0052 5 6 4.2820 0.0015 -0.0061 6 7 5.7620 0.0134 -0.0123 7 8 6.4297 -1.1218 -0.0136 8 8 6.4114 1.1592 -0.0164 9 6 3.6037 -1.1992 -0.0013 10 6 2.2069 -1.2084 0.0045 11 6 1.4735 -2.4905 0.0087 12 8 0.6694 -2.7274 0.8878 13 7 1.6964 -3.3975 -0.9630 14 6 1.0187 -4.5457 -0.9714 15 1 -0.0187 -4.5627 -0.6718 16 6 1.6812 -5.7858 -1.3935 17 7 2.8779 -5.7457 -1.8819 18 14 0.7954 -7.4218 -1.2253 19 1 -0.4549 -7.3923 -2.0260 20 1 1.6733 -8.5130 -1.7189 21 1 0.4634 -7.6605 0.2024 22 6 2.6832 -3.1217 -2.0101 23 6 2.8349 -1.5990 -2.2055 24 6 3.0300 -1.4304 -3.7335 25 6 2.0720 -2.4965 -4.3207 26 6 2.1988 -3.6924 -3.3546 27 1 -0.3634 0.0060 1.0276 28 1 -0.3633 0.8869 -0.5191 29 1 -0.3633 -0.8931 -0.5086 30 1 1.6584 2.1291 0.0004 31 1 4.1182 2.1330 -0.0090 32 1 4.1511 -2.1302 -0.0016 33 1 3.2893 -6.5546 -2.2245 34 1 3.6440 -3.5613 -1.7424 35 1 1.9343 -1.0806 -1.8765 36 1 3.7071 -1.2302 -1.6657 37 1 4.0615 -1.6404 -4.0161 38 1 2.7388 -0.4305 -4.0552 39 1 2.3879 -2.7818 -5.3243 40 1 1.0475 -2.1250 -4.3355 41 1 2.9249 -4.4082 -3.7396 42 1 1.2298 -4.1752 -3.2277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:27 Heat of formation + Delta-G solvation = 44.198741 kcal Electronic energy + Delta-G solvation = -28476.003529 eV Core-core repulsion = 24619.741405 eV Total energy + Delta-G solvation = -3856.262124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70567 -40.46628 -39.21401 -38.45934 -35.77333 -35.59797 -34.39629 -34.06845 -32.94097 -29.81081 -29.05056 -28.55333 -27.17037 -26.14943 -24.72816 -23.02039 -21.93924 -21.35521 -21.21746 -19.48325 -19.23798 -18.71243 -17.65358 -17.39598 -17.07032 -16.88396 -16.68243 -16.41675 -15.97824 -15.53407 -15.21307 -15.07044 -14.72002 -14.46993 -14.10748 -13.65431 -13.50012 -13.35264 -13.30257 -12.97882 -12.94638 -12.76144 -12.48344 -12.30362 -12.28272 -12.21933 -12.07045 -11.94750 -11.91876 -11.85753 -11.75024 -11.34776 -10.80068 -10.48530 -10.11169 -9.80990 -9.71704 -8.45775 -5.93730 -1.84411 -0.27516 0.00632 0.03279 1.32462 1.38596 1.44447 1.82402 2.19365 2.24826 2.79055 2.94137 3.31303 3.33824 3.50273 3.68391 3.73143 3.77667 3.81132 3.93417 4.14681 4.42501 4.45926 4.54562 4.56495 4.60354 4.66522 4.67678 4.71983 4.76534 4.84042 4.86268 4.93861 5.05813 5.08055 5.19730 5.24552 5.26651 5.41791 5.43934 5.58748 5.63618 5.70824 6.06308 6.42834 7.06791 7.38256 8.05673 8.49675 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.005427 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.560947 B = 5157.837504 C = 5565.397295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.008 3.992 3 C -0.106 4.106 4 C -0.023 4.023 5 C -0.047 4.047 6 N -0.003 5.003 7 O -0.259 6.259 8 O -0.147 6.147 9 C -0.003 4.003 10 C -0.109 4.109 11 C 0.460 3.540 12 O -0.617 6.617 13 N -0.407 5.407 14 C -0.389 4.389 15 H 0.070 0.930 16 C 0.025 3.975 17 N -0.841 5.841 18 Si 0.979 3.021 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.280 1.280 22 C 0.149 3.851 23 C -0.159 4.159 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.094 4.094 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.206 0.794 31 H 0.189 0.811 32 H 0.124 0.876 33 H 0.285 0.715 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 14.312 -4.270 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.006 3.994 3 C -0.124 4.124 4 C -0.042 4.042 5 C -0.134 4.134 6 N 0.469 4.531 7 O -0.432 6.432 8 O -0.353 6.353 9 C -0.023 4.023 10 C -0.113 4.113 11 C 0.251 3.749 12 O -0.505 6.505 13 N -0.121 5.121 14 C -0.518 4.518 15 H 0.088 0.912 16 C -0.188 4.188 17 N -0.472 5.472 18 Si 0.802 3.198 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.206 1.206 22 C 0.046 3.954 23 C -0.195 4.195 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.132 4.132 27 H 0.107 0.893 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.223 0.777 31 H 0.206 0.794 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.632 13.799 -3.946 14.591 hybrid contribution 0.559 -1.939 0.287 2.038 sum -2.073 11.860 -3.659 12.583 Atomic orbital electron populations 1.20995 0.88337 1.04037 1.04120 1.20778 0.98424 0.91136 0.89032 1.21462 0.91533 0.98998 1.00389 1.21573 0.95026 0.96402 0.91172 1.20232 0.75382 0.97286 1.20516 1.50630 1.05370 1.02178 0.94955 1.96342 1.69929 1.15946 1.60971 1.96173 1.71387 1.14397 1.53297 1.20591 0.94012 0.97436 0.90272 1.19793 0.91787 0.95542 1.04219 1.18239 0.87459 0.86177 0.83065 1.90555 1.40626 1.80243 1.39125 1.42690 1.34246 1.15111 1.20067 1.19915 0.95085 0.84443 1.52335 0.91202 1.27613 0.95138 1.01713 0.94303 1.68982 1.14414 1.31616 1.32220 0.85231 0.78896 0.76867 0.78773 1.18576 1.19257 1.20598 1.21728 0.91853 0.92880 0.88973 1.24572 1.00083 0.96352 0.98529 1.22552 0.99713 0.99813 0.93328 1.22439 0.99347 0.95430 0.98753 1.22051 1.01474 0.96958 0.92729 0.89268 0.86186 0.93647 0.77698 0.79370 0.85768 0.90351 0.93116 0.89467 0.90488 0.91603 0.89235 0.90601 0.91899 0.92382 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.19 71.23 0.65 -2.18 16 2 C 0.01 0.20 4.78 -19.59 -0.09 0.11 16 3 C -0.11 -1.76 9.69 22.23 0.22 -1.55 16 4 C -0.02 -0.45 9.57 22.34 0.21 -0.23 16 5 C -0.05 -1.38 6.08 36.34 0.22 -1.16 16 6 N 0.00 -0.10 4.98 -46.56 -0.23 -0.33 16 7 O -0.26 -10.60 19.14 3.52 0.07 -10.54 16 8 O -0.15 -4.64 19.14 3.51 0.07 -4.57 16 9 C 0.00 -0.10 5.23 22.54 0.12 0.02 16 10 C -0.11 -3.95 2.97 -20.09 -0.06 -4.01 16 11 C 0.46 22.01 5.64 86.74 0.49 22.49 16 12 O -0.62 -33.78 16.06 -3.62 -0.06 -33.84 16 13 N -0.41 -20.25 2.84 -607.95 -1.73 -21.97 16 14 C -0.39 -21.03 7.76 86.70 0.67 -20.35 16 15 H 0.07 4.05 7.76 -2.91 -0.02 4.02 16 16 C 0.03 1.27 4.72 87.30 0.41 1.68 16 17 N -0.84 -41.80 9.19 23.26 0.21 -41.59 16 18 Si 0.98 40.66 29.65 68.60 2.03 42.70 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.15 6.45 2.07 45.72 0.09 6.55 16 23 C -0.16 -5.45 4.08 31.69 0.13 -5.32 16 24 C -0.12 -3.31 6.91 31.91 0.22 -3.09 16 25 C -0.12 -3.76 6.83 31.67 0.22 -3.55 16 26 C -0.09 -3.84 4.73 31.32 0.15 -3.69 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.12 1.66 8.09 -2.39 -0.02 1.64 16 29 H 0.04 1.44 6.91 -2.38 -0.02 1.43 16 30 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.19 2.48 7.57 -2.91 -0.02 2.46 16 32 H 0.12 5.20 7.02 -2.91 -0.02 5.18 16 33 H 0.28 13.21 8.27 -92.71 -0.77 12.44 16 34 H 0.05 2.52 7.07 -2.39 -0.02 2.50 16 35 H 0.09 2.91 4.60 -2.39 -0.01 2.90 16 36 H 0.08 2.66 3.54 -31.48 -0.11 2.55 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 2.47 7.19 -2.39 -0.02 2.46 16 42 H 0.06 2.61 6.03 -2.39 -0.01 2.60 16 Total: -1.00 -69.08 335.41 4.98 -64.11 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.96 Total: 20.30 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 3.65 Total: -14.27 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -1.75 Total: -63.89 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: 0.08 Total: -48.94 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.70 kcal Total: -69.08 4.98 -64.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.304 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds