Wall clock time and date at job start Tue Mar 31 2020 13:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34867 * 126.33996 * 2 1 4 4 C 1.34551 * 107.67784 * 180.02562 * 3 2 1 5 5 C 1.46998 * 125.75809 * 179.97438 * 4 3 2 6 6 C 1.36326 * 125.96853 * 0.02562 * 5 4 3 7 7 C 1.40716 * 106.71799 * 180.02562 * 6 5 4 8 8 C 1.34878 * 107.08369 * 359.97438 * 7 6 5 9 9 O 1.34222 * 108.73214 * 0.02562 * 8 7 6 10 10 N 1.31526 * 108.47827 * 0.22880 * 4 3 2 11 11 C 1.34164 * 108.62047 * 359.62999 * 10 4 3 12 12 C 1.50698 * 126.05245 * 180.14663 * 11 10 4 13 13 C 1.50704 * 109.47150 * 270.26200 * 12 11 10 14 14 O 1.21281 * 119.99414 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99899 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00141 * 0.02562 * 15 13 12 17 17 C 1.46498 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.47108 * 359.97438 * 17 15 13 19 19 C 1.52997 * 109.47475 * 119.99857 * 17 15 13 20 20 C 1.50700 * 109.47197 * 240.00574 * 17 15 13 21 21 H 1.07999 * 120.00199 * 359.97438 * 20 17 15 22 22 C 1.37883 * 120.00324 * 179.97438 * 20 17 15 23 23 N 1.31513 * 119.99926 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 119.99698 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.47008 * 89.99899 * 24 22 20 26 26 H 1.48498 * 109.46986 * 210.00092 * 24 22 20 27 27 H 1.48497 * 109.46998 * 329.99976 * 24 22 20 28 28 H 1.09004 * 109.46963 * 359.97082 * 1 2 3 29 29 H 1.08999 * 109.47387 * 119.96977 * 1 2 3 30 30 H 1.08999 * 109.47025 * 239.97859 * 1 2 3 31 31 H 1.07993 * 126.63951 * 0.02562 * 6 5 4 32 32 H 1.07994 * 126.45150 * 180.02562 * 7 6 5 33 33 H 1.07998 * 125.63021 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47194 * 30.26012 * 12 11 10 35 35 H 1.08991 * 109.47023 * 150.25979 * 12 11 10 36 36 H 1.09000 * 109.47309 * 89.99650 * 16 15 13 37 37 H 1.08999 * 109.47025 * 209.99892 * 16 15 13 38 38 H 1.09004 * 109.47323 * 329.99481 * 16 15 13 39 39 H 1.08996 * 109.46889 * 179.97438 * 19 17 15 40 40 H 1.08998 * 109.47131 * 300.00295 * 19 17 15 41 41 H 1.09002 * 109.46759 * 60.00025 * 19 17 15 42 42 H 0.97005 * 119.99469 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0864 0.0000 4 6 3.5809 0.6558 -0.0006 5 6 4.7765 1.5111 -0.0013 6 6 4.7857 2.8743 -0.0010 7 6 6.1361 3.2700 -0.0026 8 6 6.8788 2.1441 -0.0031 9 8 6.0552 1.0843 -0.0026 10 7 3.5767 -0.6594 -0.0059 11 6 2.3039 -1.0837 -0.0006 12 6 1.8479 -2.5201 -0.0008 13 6 1.6954 -2.9985 -1.4217 14 8 1.9340 -2.2471 -2.3433 15 7 1.2948 -4.2615 -1.6681 16 6 1.0071 -5.1691 -0.5547 17 6 1.1470 -4.7268 -3.0494 18 1 1.4028 -3.9184 -3.7344 19 6 2.0808 -5.9146 -3.2901 20 6 -0.2790 -5.1527 -3.2861 21 1 -1.0028 -5.0841 -2.4875 22 6 -0.6598 -5.6300 -4.5224 23 7 -1.9042 -6.0021 -4.7288 24 14 0.5919 -5.7480 -5.9040 25 1 1.2459 -7.0807 -5.8670 26 1 -0.0933 -5.5689 -7.2093 27 1 1.6180 -4.6881 -5.7341 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5133 -0.8902 30 1 -0.3633 -0.5142 0.8898 31 1 3.9236 3.5247 0.0001 32 1 6.5076 4.2840 -0.0024 33 1 7.9580 2.1023 -0.0039 34 1 2.5864 -3.1358 0.5126 35 1 0.8900 -2.5971 0.5134 36 1 -0.0438 -5.0836 -0.2784 37 1 1.2210 -6.1943 -0.8571 38 1 1.6302 -4.9049 0.2998 39 1 1.9705 -6.2609 -4.3177 40 1 3.1122 -5.6064 -3.1189 41 1 1.8246 -6.7228 -2.6051 42 1 -2.1719 -6.3383 -5.5985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:44 Heat of formation + Delta-G solvation = 20.144909 kcal Electronic energy + Delta-G solvation = -26289.205418 eV Core-core repulsion = 22431.900241 eV Total energy + Delta-G solvation = -3857.305177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41845 -42.73666 -39.22388 -35.73066 -34.96973 -33.54896 -33.22037 -32.74856 -30.83329 -30.31845 -29.07104 -26.27986 -25.98180 -25.09281 -23.08909 -22.43249 -21.69604 -20.98909 -20.25172 -18.54454 -18.14085 -17.24068 -16.84759 -16.45247 -16.20857 -15.95036 -15.59708 -15.47131 -14.87663 -14.25756 -13.97755 -13.52368 -13.22457 -13.14806 -13.11701 -13.01609 -12.88424 -12.75329 -12.52358 -12.33086 -12.22202 -11.85637 -11.75013 -11.59554 -11.27842 -11.09493 -10.68721 -10.52823 -10.33987 -10.13631 -9.65726 -9.62284 -9.34066 -9.02464 -8.64280 -8.07709 -7.73409 -6.15808 -4.16186 0.62669 1.71796 1.78822 2.20443 2.86133 3.23135 3.24490 3.26584 3.37018 3.40749 3.69396 3.90360 4.35001 4.58554 4.60898 4.67340 4.75157 5.04552 5.09742 5.16831 5.21011 5.37164 5.43954 5.47296 5.52766 5.57054 5.60100 5.75175 5.93410 5.96309 5.99497 6.06225 6.15620 6.20481 6.26669 6.34694 6.49498 6.69199 6.85415 7.12131 7.34134 7.62568 7.63364 8.16831 8.46447 8.83429 8.90377 9.45806 10.96846 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003023 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.538353 B = 9259.261568 C = 9699.874837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.016 4.016 3 O -0.184 6.184 4 C 0.241 3.759 5 C 0.068 3.932 6 C -0.162 4.162 7 C -0.215 4.215 8 C -0.017 4.017 9 O -0.147 6.147 10 N -0.436 5.436 11 C 0.018 3.982 12 C -0.060 4.060 13 C 0.510 3.490 14 O -0.545 6.545 15 N -0.588 5.588 16 C 0.084 3.916 17 C 0.230 3.770 18 H 0.062 0.938 19 C -0.162 4.162 20 C -0.526 4.526 21 H 0.079 0.921 22 C 0.076 3.924 23 N -0.896 5.896 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.263 1.263 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.213 0.787 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.424 14.166 14.387 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 O -0.071 6.071 4 C 0.039 3.961 5 C 0.017 3.983 6 C -0.183 4.183 7 C -0.234 4.234 8 C -0.086 4.086 9 O -0.041 6.041 10 N -0.165 5.165 11 C -0.105 4.105 12 C -0.100 4.100 13 C 0.296 3.704 14 O -0.423 6.423 15 N -0.319 5.319 16 C -0.059 4.059 17 C 0.128 3.872 18 H 0.080 0.920 19 C -0.220 4.220 20 C -0.564 4.564 21 H 0.097 0.903 22 C -0.127 4.127 23 N -0.533 5.533 24 Si 0.712 3.288 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.188 1.188 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.009 13.815 13.748 22.893 hybrid contribution -0.002 0.298 -0.858 0.908 sum 12.007 14.113 12.891 22.572 Atomic orbital electron populations 1.20404 0.83095 1.04532 1.04706 1.23365 0.94787 0.83374 1.05384 1.84410 1.16046 1.36075 1.70610 1.21154 0.81828 0.87389 1.05752 1.17584 0.80419 0.89521 1.10786 1.21895 0.98774 0.92655 1.04972 1.21773 0.92566 1.00158 1.08889 1.24370 0.96377 0.83756 1.04130 1.84148 1.14098 1.35405 1.70497 1.70662 1.22624 1.07846 1.15371 1.20768 0.87767 0.96211 1.05707 1.20037 1.03304 0.89620 0.97071 1.20126 0.77838 0.82290 0.90118 1.90671 1.51004 1.54494 1.46119 1.47840 1.64782 1.10691 1.08575 1.21642 1.00455 0.95373 0.88478 1.19284 0.95779 0.93344 0.78802 0.92041 1.22459 0.98165 1.00460 1.00903 1.21153 0.92943 1.43426 0.98927 0.90299 1.24856 0.95192 0.94495 0.98151 1.69872 1.16545 1.43133 1.23757 0.86936 0.81552 0.78871 0.81479 1.20369 1.22138 1.18824 0.90127 0.88293 0.88894 0.82409 0.82495 0.77066 0.87346 0.87311 0.92609 0.90694 0.92586 0.93165 0.94758 0.92481 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.94 36.00 0.36 -0.41 16 2 C -0.02 -0.24 7.38 -35.62 -0.26 -0.50 16 3 O -0.18 -2.81 10.80 3.46 0.04 -2.78 16 4 C 0.24 3.93 8.12 -14.13 -0.11 3.81 16 5 C 0.07 0.94 7.24 -36.72 -0.27 0.68 16 6 C -0.16 -1.74 10.85 -39.33 -0.43 -2.16 16 7 C -0.21 -1.79 10.88 -39.84 -0.43 -2.23 16 8 C -0.02 -0.14 12.08 29.54 0.36 0.21 16 9 O -0.15 -1.92 10.67 4.54 0.05 -1.88 16 10 N -0.44 -7.87 11.34 -8.13 -0.09 -7.96 16 11 C 0.02 0.30 5.59 -82.89 -0.46 -0.16 16 12 C -0.06 -0.89 4.58 -29.03 -0.13 -1.03 16 13 C 0.51 10.28 7.67 -10.99 -0.08 10.19 16 14 O -0.54 -13.39 15.36 5.56 0.09 -13.30 16 15 N -0.59 -11.96 2.75 -175.26 -0.48 -12.44 16 16 C 0.08 1.31 9.48 59.85 0.57 1.88 16 17 C 0.23 5.57 2.23 -69.08 -0.15 5.42 16 18 H 0.06 1.68 5.95 -51.93 -0.31 1.37 16 19 C -0.16 -3.54 8.65 37.16 0.32 -3.21 16 20 C -0.53 -14.42 8.95 -34.44 -0.31 -14.72 16 21 H 0.08 2.30 7.89 -52.49 -0.41 1.88 16 22 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 23 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 24 Si 0.88 22.03 24.38 -169.99 -4.14 17.88 16 25 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.11 1.42 7.40 -51.93 -0.38 1.04 16 35 H 0.11 1.26 7.85 -51.93 -0.41 0.85 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 38 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 39 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -36.73 353.94 -4.84 -41.57 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.26 Total: -0.22 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.14 Total: -0.18 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.20 Total: -46.43 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.73 -4.84 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds