Wall clock time and date at job start Tue Mar 31 2020 13:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34867 * 126.33996 * 2 1 4 4 C 1.34551 * 107.67784 * 180.02562 * 3 2 1 5 5 C 1.46998 * 125.75809 * 179.97438 * 4 3 2 6 6 C 1.36326 * 125.96853 * 0.02562 * 5 4 3 7 7 C 1.40716 * 106.71799 * 180.02562 * 6 5 4 8 8 C 1.34878 * 107.08369 * 359.97438 * 7 6 5 9 9 O 1.34222 * 108.73214 * 0.02562 * 8 7 6 10 10 N 1.31526 * 108.47827 * 0.22880 * 4 3 2 11 11 C 1.34164 * 108.62047 * 359.62999 * 10 4 3 12 12 C 1.50698 * 126.05245 * 180.14663 * 11 10 4 13 13 C 1.50704 * 109.47150 * 270.26200 * 12 11 10 14 14 O 1.21281 * 119.99414 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99899 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00141 * 0.02562 * 15 13 12 17 17 C 1.46498 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.09002 * 109.47108 * 359.97438 * 17 15 13 19 19 C 1.52997 * 109.47475 * 119.99857 * 17 15 13 20 20 C 1.50700 * 109.47197 * 240.00574 * 17 15 13 21 21 H 1.07999 * 120.00199 * 359.97438 * 20 17 15 22 22 C 1.37883 * 120.00324 * 179.97438 * 20 17 15 23 23 N 1.31513 * 119.99926 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 119.99698 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.47008 * 89.99899 * 24 22 20 26 26 H 1.48498 * 109.46986 * 210.00092 * 24 22 20 27 27 H 1.48497 * 109.46998 * 329.99976 * 24 22 20 28 28 H 1.09004 * 109.46963 * 359.97082 * 1 2 3 29 29 H 1.08999 * 109.47387 * 119.96977 * 1 2 3 30 30 H 1.08999 * 109.47025 * 239.97859 * 1 2 3 31 31 H 1.07993 * 126.63951 * 0.02562 * 6 5 4 32 32 H 1.07994 * 126.45150 * 180.02562 * 7 6 5 33 33 H 1.07998 * 125.63021 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47194 * 30.26012 * 12 11 10 35 35 H 1.08991 * 109.47023 * 150.25979 * 12 11 10 36 36 H 1.09000 * 109.47309 * 89.99650 * 16 15 13 37 37 H 1.08999 * 109.47025 * 209.99892 * 16 15 13 38 38 H 1.09004 * 109.47323 * 329.99481 * 16 15 13 39 39 H 1.08996 * 109.46889 * 179.97438 * 19 17 15 40 40 H 1.08998 * 109.47131 * 300.00295 * 19 17 15 41 41 H 1.09002 * 109.46759 * 60.00025 * 19 17 15 42 42 H 0.97005 * 119.99469 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0864 0.0000 4 6 3.5809 0.6558 -0.0006 5 6 4.7765 1.5111 -0.0013 6 6 4.7857 2.8743 -0.0010 7 6 6.1361 3.2700 -0.0026 8 6 6.8788 2.1441 -0.0031 9 8 6.0552 1.0843 -0.0026 10 7 3.5767 -0.6594 -0.0059 11 6 2.3039 -1.0837 -0.0006 12 6 1.8479 -2.5201 -0.0008 13 6 1.6954 -2.9985 -1.4217 14 8 1.9340 -2.2471 -2.3433 15 7 1.2948 -4.2615 -1.6681 16 6 1.0071 -5.1691 -0.5547 17 6 1.1470 -4.7268 -3.0494 18 1 1.4028 -3.9184 -3.7344 19 6 2.0808 -5.9146 -3.2901 20 6 -0.2790 -5.1527 -3.2861 21 1 -1.0028 -5.0841 -2.4875 22 6 -0.6598 -5.6300 -4.5224 23 7 -1.9042 -6.0021 -4.7288 24 14 0.5919 -5.7480 -5.9040 25 1 1.2459 -7.0807 -5.8670 26 1 -0.0933 -5.5689 -7.2093 27 1 1.6180 -4.6881 -5.7341 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5133 -0.8902 30 1 -0.3633 -0.5142 0.8898 31 1 3.9236 3.5247 0.0001 32 1 6.5076 4.2840 -0.0024 33 1 7.9580 2.1023 -0.0039 34 1 2.5864 -3.1358 0.5126 35 1 0.8900 -2.5971 0.5134 36 1 -0.0438 -5.0836 -0.2784 37 1 1.2210 -6.1943 -0.8571 38 1 1.6302 -4.9049 0.2998 39 1 1.9705 -6.2609 -4.3177 40 1 3.1122 -5.6064 -3.1189 41 1 1.8246 -6.7228 -2.6051 42 1 -2.1719 -6.3383 -5.5985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078420502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:43 Heat of formation + Delta-G solvation = -8.107909 kcal Electronic energy + Delta-G solvation = -26290.430552 eV Core-core repulsion = 22431.900241 eV Total energy + Delta-G solvation = -3858.530311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.51777 -43.56817 -40.82231 -37.38567 -36.25349 -34.84422 -34.48621 -34.04961 -32.58580 -31.15079 -30.36156 -27.67452 -27.16671 -26.95465 -24.24084 -23.51997 -22.97548 -21.94391 -21.47299 -19.97601 -19.19649 -18.96172 -18.28492 -17.80225 -17.41962 -17.26635 -16.92625 -16.63853 -16.24161 -15.92153 -15.15058 -14.98766 -14.66269 -14.35667 -14.15872 -14.00216 -13.96610 -13.92091 -13.86348 -13.59937 -13.50993 -13.30361 -13.15280 -13.08219 -12.79018 -12.58893 -12.49293 -12.06971 -11.69915 -11.61229 -11.35860 -11.16510 -10.80849 -10.79470 -10.39965 -9.40306 -9.05180 -8.36097 -6.39351 -0.35439 0.74290 0.82935 1.23459 1.33417 1.38056 1.41749 1.72393 1.79211 2.26014 2.30485 2.40530 2.81054 2.99387 3.50886 3.65511 3.79439 3.89505 4.01474 4.12335 4.26586 4.34597 4.40557 4.43812 4.55434 4.58957 4.60825 4.63363 4.68480 4.78605 4.83758 4.89232 4.92607 4.98545 5.00694 5.09271 5.14713 5.31434 5.41877 5.48105 5.71937 5.90549 6.20267 6.50325 6.62460 6.72226 7.21210 7.36529 8.79637 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003023 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.538353 B = 9259.261568 C = 9699.874837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.020 4.020 3 O -0.187 6.187 4 C 0.237 3.763 5 C 0.013 3.987 6 C -0.145 4.145 7 C -0.217 4.217 8 C -0.003 4.003 9 O -0.175 6.175 10 N -0.477 5.477 11 C -0.011 4.011 12 C -0.046 4.046 13 C 0.504 3.496 14 O -0.599 6.599 15 N -0.594 5.594 16 C 0.078 3.922 17 C 0.232 3.768 18 H 0.025 0.975 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.937 5.937 24 Si 0.935 3.065 25 H -0.253 1.253 26 H -0.295 1.295 27 H -0.269 1.269 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.172 0.828 32 H 0.193 0.807 33 H 0.256 0.744 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.040 0.960 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.212 15.009 15.972 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 O -0.075 6.075 4 C 0.034 3.966 5 C -0.037 4.037 6 C -0.166 4.166 7 C -0.236 4.236 8 C -0.072 4.072 9 O -0.071 6.071 10 N -0.206 5.206 11 C -0.132 4.132 12 C -0.085 4.085 13 C 0.292 3.708 14 O -0.481 6.481 15 N -0.324 5.324 16 C -0.064 4.064 17 C 0.128 3.872 18 H 0.043 0.957 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.071 0.929 22 C -0.173 4.173 23 N -0.576 5.576 24 Si 0.763 3.237 25 H -0.179 1.179 26 H -0.222 1.222 27 H -0.195 1.195 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.189 0.811 32 H 0.210 0.790 33 H 0.272 0.728 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.790 14.625 15.378 25.309 hybrid contribution -0.493 0.195 -1.289 1.394 sum 13.297 14.820 14.089 24.391 Atomic orbital electron populations 1.20577 0.80535 1.06088 1.05275 1.24040 0.96164 0.82939 1.04210 1.84407 1.16011 1.36341 1.70727 1.21716 0.82748 0.87508 1.04640 1.17742 0.80301 0.90329 1.15351 1.22291 1.00639 0.91600 1.02101 1.22211 0.91167 1.01819 1.08377 1.25414 0.97851 0.82877 1.01038 1.84126 1.14306 1.37463 1.71244 1.70612 1.23695 1.08995 1.17339 1.21082 0.87804 0.97272 1.07083 1.20052 1.05873 0.89102 0.93494 1.21027 0.76378 0.81500 0.91855 1.90640 1.53240 1.55872 1.48322 1.47908 1.64629 1.11716 1.08165 1.21941 1.01715 0.94469 0.88279 1.18931 0.94316 0.93028 0.80924 0.95747 1.22327 0.98433 0.99743 1.00796 1.21344 0.94213 1.42271 0.98111 0.92917 1.25556 0.96686 0.94546 1.00468 1.69983 1.18290 1.44805 1.24543 0.86072 0.79359 0.79689 0.78604 1.17869 1.22245 1.19470 0.88208 0.90064 0.85633 0.81078 0.78986 0.72804 0.85123 0.83531 0.92354 0.90733 0.87976 0.94102 0.93059 0.90573 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.94 71.23 0.71 -0.70 16 2 C -0.02 -0.61 7.38 24.83 0.18 -0.42 16 3 O -0.19 -5.82 10.80 -10.53 -0.11 -5.93 16 4 C 0.24 7.93 8.12 87.04 0.71 8.64 16 5 C 0.01 0.36 7.24 24.12 0.17 0.54 16 6 C -0.14 -2.94 10.85 22.43 0.24 -2.70 16 7 C -0.22 -3.01 10.88 22.10 0.24 -2.77 16 8 C 0.00 -0.05 12.08 67.05 0.81 0.76 16 9 O -0.18 -4.54 10.67 -6.68 -0.07 -4.62 16 10 N -0.48 -17.66 11.34 -293.48 -3.33 -20.98 16 11 C -0.01 -0.36 5.59 41.35 0.23 -0.13 16 12 C -0.05 -1.30 4.58 29.10 0.13 -1.16 16 13 C 0.50 20.27 7.67 87.66 0.67 20.94 16 14 O -0.60 -30.45 15.36 -3.03 -0.05 -30.50 16 15 N -0.59 -23.82 2.75 -826.80 -2.28 -26.09 16 16 C 0.08 2.25 9.48 127.77 1.21 3.46 16 17 C 0.23 11.30 2.23 44.24 0.10 11.40 16 18 H 0.02 1.38 5.95 -2.39 -0.01 1.37 16 19 C -0.16 -6.58 8.65 71.98 0.62 -5.95 16 20 C -0.52 -29.03 8.95 25.60 0.23 -28.80 16 21 H 0.05 3.14 7.89 -2.91 -0.02 3.12 16 22 C 0.03 1.52 5.45 84.66 0.46 1.98 16 23 N -0.94 -57.10 13.96 21.45 0.30 -56.81 16 24 Si 0.93 45.82 24.38 68.60 1.67 47.49 16 25 H -0.25 -11.38 6.87 99.48 0.68 -10.70 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 27 H -0.27 -13.38 6.53 99.48 0.65 -12.73 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.26 1.05 8.06 -2.91 -0.02 1.03 16 34 H 0.13 3.10 7.40 -2.38 -0.02 3.09 16 35 H 0.15 2.96 7.85 -2.39 -0.02 2.94 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.17 6.43 -2.39 -0.02 2.15 16 38 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 39 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.90 6.66 -2.39 -0.02 2.88 16 42 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -85.42 353.94 3.84 -81.59 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.77 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.73 Total: 5.08 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -5.30 Total: -103.88 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.23 Total: -41.05 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -85.42 3.84 -81.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.479 kcal (2) G-P(sol) polarization free energy of solvation -85.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds