Wall clock time and date at job start Tue Mar 31 2020 13:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34872 * 126.32959 * 2 1 4 4 C 1.34559 * 107.67435 * 179.97438 * 3 2 1 5 5 C 1.46990 * 125.76035 * 180.02562 * 4 3 2 6 6 C 1.36318 * 125.96775 * 359.69462 * 5 4 3 7 7 C 1.40709 * 106.72061 * 179.88431 * 6 5 4 8 8 C 1.34875 * 107.08279 * 0.37321 * 7 6 5 9 9 O 1.34224 * 108.73012 * 359.76645 * 8 7 6 10 10 N 1.31530 * 108.47167 * 359.73094 * 4 3 2 11 11 C 1.34157 * 108.62465 * 0.43402 * 10 4 3 12 12 C 1.50708 * 126.05128 * 179.82419 * 11 10 4 13 13 C 1.50701 * 109.47205 * 269.69535 * 12 11 10 14 14 O 1.21279 * 119.99863 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99833 * 180.02562 * 13 12 11 16 16 C 1.46502 * 120.00125 * 359.97438 * 15 13 12 17 17 C 1.46500 * 120.00163 * 179.97438 * 15 13 12 18 18 H 1.08998 * 109.46845 * 0.02562 * 17 15 13 19 19 C 1.52997 * 109.47473 * 240.00131 * 17 15 13 20 20 C 1.50706 * 109.47187 * 119.99734 * 17 15 13 21 21 H 1.07998 * 119.99629 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99955 * 179.97438 * 20 17 15 23 23 N 1.31510 * 120.00308 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99908 * 180.02562 * 22 20 17 25 25 H 1.48500 * 109.47233 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46997 * 120.00173 * 24 22 20 27 27 H 1.48501 * 109.47364 * 240.00497 * 24 22 20 28 28 H 1.08996 * 109.47268 * 270.03921 * 1 2 3 29 29 H 1.08997 * 109.47319 * 30.04395 * 1 2 3 30 30 H 1.09009 * 109.46839 * 150.03739 * 1 2 3 31 31 H 1.08000 * 126.63799 * 0.02562 * 6 5 4 32 32 H 1.08003 * 126.45733 * 180.16042 * 7 6 5 33 33 H 1.08003 * 125.63479 * 179.74661 * 8 7 6 34 34 H 1.09000 * 109.46660 * 149.69819 * 12 11 10 35 35 H 1.08993 * 109.46759 * 29.69521 * 12 11 10 36 36 H 1.08993 * 109.47565 * 270.00429 * 16 15 13 37 37 H 1.09007 * 109.46761 * 30.00462 * 16 15 13 38 38 H 1.09002 * 109.46792 * 150.00115 * 16 15 13 39 39 H 1.09002 * 109.47153 * 59.99757 * 19 17 15 40 40 H 1.09001 * 109.46832 * 299.99948 * 19 17 15 41 41 H 1.09004 * 109.47261 * 179.97438 * 19 17 15 42 42 H 0.96998 * 120.00365 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0866 0.0000 4 6 3.5809 0.6561 0.0006 5 6 4.7763 1.5115 0.0013 6 6 4.7855 2.8746 -0.0043 7 6 6.1357 3.2704 0.0016 8 6 6.8786 2.1447 0.0021 9 8 6.0550 1.0848 0.0020 10 7 3.5767 -0.6591 0.0068 11 6 2.3041 -1.0836 0.0006 12 6 1.8481 -2.5200 0.0007 13 6 1.6967 -2.9991 -1.4200 14 8 1.9351 -2.2480 -2.3419 15 7 1.2955 -4.2620 -1.6661 16 6 1.0071 -5.1691 -0.5525 17 6 1.1477 -4.7276 -3.0473 18 1 1.4050 -3.9199 -3.7324 19 6 -0.3002 -5.1594 -3.2878 20 6 2.0670 -5.8982 -3.2838 21 1 2.6978 -6.2594 -2.4850 22 6 2.1018 -6.5087 -4.5195 23 7 1.3333 -6.0692 -5.4920 24 14 3.2407 -7.9601 -4.8125 25 1 3.9940 -8.2574 -3.5677 26 1 2.4387 -9.1480 -5.2008 27 1 4.1944 -7.6291 -5.9016 28 1 -0.3633 0.0007 1.0276 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5133 31 1 3.9232 3.5249 -0.0098 32 1 6.5072 4.2846 0.0019 33 1 7.9578 2.1030 0.0022 34 1 0.8897 -2.5969 0.5142 35 1 2.5863 -3.1354 0.5150 36 1 1.9148 -5.7053 -0.2760 37 1 0.6505 -4.5936 0.3019 38 1 0.2410 -5.8833 -0.8547 39 1 -0.9650 -4.3128 -3.1168 40 1 -0.5570 -5.9673 -2.6026 41 1 -0.4102 -5.5055 -4.3156 42 1 1.3581 -6.4984 -6.3615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078420507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:49 Heat of formation + Delta-G solvation = -14.687033 kcal Electronic energy + Delta-G solvation = -26226.268582 eV Core-core repulsion = 22367.452979 eV Total energy + Delta-G solvation = -3858.815603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.50775 -43.57373 -40.72105 -37.25183 -36.23750 -34.87531 -34.48330 -34.04309 -31.92400 -31.14686 -30.07683 -27.58389 -27.29549 -26.94266 -24.19019 -23.46845 -22.93764 -21.94736 -21.46989 -19.97601 -19.18976 -18.57000 -18.27082 -17.77525 -17.36032 -17.06521 -16.89359 -16.64045 -16.11264 -16.01452 -15.15071 -14.72018 -14.51789 -14.23725 -14.07364 -13.95647 -13.90850 -13.85652 -13.56487 -13.46817 -13.30843 -13.06659 -12.96058 -12.87545 -12.66029 -12.62220 -12.47910 -12.17865 -12.12389 -11.67773 -11.18566 -11.14891 -10.77835 -10.54014 -10.36312 -9.32768 -9.04473 -8.16126 -6.32514 -0.34976 0.74650 0.84332 1.38007 1.38440 1.40579 1.51533 1.77743 1.80625 2.32772 2.38219 2.53809 2.82759 3.11608 3.51868 3.66280 3.84844 3.89460 4.01121 4.11573 4.27755 4.35392 4.50616 4.59314 4.64319 4.68673 4.73845 4.80684 4.83507 4.88658 4.91155 4.93271 5.00851 5.05808 5.09850 5.15220 5.42001 5.46975 5.64527 5.67251 5.90851 6.05103 6.16434 6.52460 6.76017 6.82735 7.31096 7.47859 8.88166 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003124 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.973198 B = 8959.737315 C =10048.679816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.019 4.019 3 O -0.187 6.187 4 C 0.236 3.764 5 C 0.012 3.988 6 C -0.143 4.143 7 C -0.216 4.216 8 C -0.006 4.006 9 O -0.178 6.178 10 N -0.483 5.483 11 C -0.013 4.013 12 C -0.046 4.046 13 C 0.499 3.501 14 O -0.603 6.603 15 N -0.599 5.599 16 C 0.078 3.922 17 C 0.262 3.738 18 H 0.003 0.997 19 C -0.131 4.131 20 C -0.539 4.539 21 H 0.058 0.942 22 C 0.014 3.986 23 N -0.917 5.917 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.271 1.271 27 H -0.287 1.287 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.174 0.826 32 H 0.194 0.806 33 H 0.255 0.745 34 H 0.155 0.845 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 15.498 17.606 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 O -0.074 6.074 4 C 0.033 3.967 5 C -0.038 4.038 6 C -0.165 4.165 7 C -0.234 4.234 8 C -0.074 4.074 9 O -0.074 6.074 10 N -0.213 5.213 11 C -0.134 4.134 12 C -0.085 4.085 13 C 0.287 3.713 14 O -0.485 6.485 15 N -0.329 5.329 16 C -0.064 4.064 17 C 0.160 3.840 18 H 0.021 0.979 19 C -0.189 4.189 20 C -0.577 4.577 21 H 0.076 0.924 22 C -0.185 4.185 23 N -0.556 5.556 24 Si 0.789 3.211 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.213 1.213 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.212 0.788 33 H 0.271 0.729 34 H 0.173 0.827 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.106 15.148 16.960 22.838 hybrid contribution 0.239 -0.370 -0.971 1.067 sum 2.345 14.778 15.989 21.898 Atomic orbital electron populations 1.20597 0.79981 1.05483 1.06146 1.24113 0.96363 0.82711 1.04056 1.84396 1.15886 1.36335 1.70797 1.21713 0.82850 0.87419 1.04706 1.17781 0.80269 0.90428 1.15356 1.22292 1.00659 0.91460 1.02058 1.22215 0.91158 1.01767 1.08291 1.25416 0.97867 0.82938 1.01172 1.84132 1.14448 1.37581 1.71255 1.70624 1.24111 1.09191 1.17363 1.21121 0.87771 0.97398 1.07149 1.20075 1.05800 0.89044 0.93616 1.21046 0.76618 0.81901 0.91709 1.90642 1.53008 1.56426 1.48442 1.48219 1.64575 1.11159 1.08982 1.21910 1.01523 0.94475 0.88452 1.18516 0.94095 0.93184 0.78252 0.97880 1.21856 0.95528 0.98649 1.02901 1.21638 1.23335 1.15080 0.97690 0.92391 1.25730 0.97151 1.00083 0.95573 1.70025 1.39965 1.42379 1.03277 0.85428 0.78621 0.79032 0.78066 1.19048 1.19589 1.21322 0.85686 0.88850 0.88790 0.80843 0.78838 0.72923 0.82697 0.86291 0.93024 0.87763 0.90678 0.95633 0.92985 0.91613 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.03 71.24 0.71 -0.50 16 2 C -0.02 -0.57 7.38 24.83 0.18 -0.39 16 3 O -0.19 -5.91 10.80 -10.66 -0.12 -6.03 16 4 C 0.24 8.33 8.12 87.03 0.71 9.03 16 5 C 0.01 0.35 7.24 24.12 0.17 0.53 16 6 C -0.14 -3.08 10.85 22.43 0.24 -2.83 16 7 C -0.22 -3.28 10.88 22.10 0.24 -3.04 16 8 C -0.01 -0.09 12.08 67.05 0.81 0.72 16 9 O -0.18 -5.05 10.67 -6.64 -0.07 -5.12 16 10 N -0.48 -19.21 11.34 -293.47 -3.33 -22.54 16 11 C -0.01 -0.44 5.59 41.35 0.23 -0.21 16 12 C -0.05 -1.38 4.41 29.10 0.13 -1.25 16 13 C 0.50 21.36 7.67 87.66 0.67 22.04 16 14 O -0.60 -32.77 15.36 -3.03 -0.05 -32.82 16 15 N -0.60 -25.53 2.75 -826.80 -2.28 -27.81 16 16 C 0.08 2.36 9.48 127.77 1.21 3.58 16 17 C 0.26 13.92 2.64 44.25 0.12 14.04 16 18 H 0.00 0.21 6.90 -2.39 -0.02 0.19 16 19 C -0.13 -6.27 8.95 71.98 0.64 -5.63 16 20 C -0.54 -30.25 8.37 25.60 0.21 -30.03 16 21 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 22 C 0.01 0.79 5.30 84.65 0.45 1.24 16 23 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 24 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 28 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.83 7.78 -2.38 -0.02 1.81 16 31 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.19 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.25 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.16 2.99 7.03 -2.39 -0.02 2.97 16 35 H 0.12 3.33 8.11 -2.39 -0.02 3.31 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 2.05 6.44 -2.38 -0.02 2.04 16 38 H 0.07 2.26 6.43 -2.39 -0.02 2.25 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 2.22 6.66 -2.39 -0.02 2.21 16 41 H 0.07 3.54 6.07 -2.38 -0.01 3.52 16 42 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -86.83 360.19 4.22 -82.61 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.05 Total: 11.88 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.74 Total: 7.27 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.36 Total: -104.17 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.23 Total: -43.97 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -86.83 4.22 -82.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.926 kcal (2) G-P(sol) polarization free energy of solvation -86.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds