Wall clock time and date at job start Tue Mar 31 2020 12:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47200 * 300.00287 * 3 2 1 6 6 H 1.48504 * 109.46964 * 60.00343 * 3 2 1 7 7 C 1.37882 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99890 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46736 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00040 * 193.95638 * 10 9 7 12 12 C 1.50696 * 109.47399 * 66.04221 * 11 10 9 13 13 O 1.21290 * 119.99984 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00148 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99983 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 12 17 17 C 1.34514 * 125.78711 * 89.99974 * 16 15 14 18 18 C 1.41388 * 106.83816 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.84057 * 0.02562 * 18 17 16 20 20 O 1.34302 * 108.42159 * 359.73578 * 19 18 17 21 21 C 1.46899 * 111.00255 * 69.99902 * 10 9 7 22 22 C 1.50703 * 109.47107 * 293.95458 * 21 10 9 23 23 C 1.34515 * 125.79060 * 89.99940 * 22 21 10 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69278 * 22 21 10 27 27 H 0.96999 * 120.00134 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46930 * 60.00374 * 9 7 2 29 29 H 1.08999 * 109.47356 * 299.99533 * 9 7 2 30 30 H 1.08998 * 109.47407 * 186.04713 * 11 10 9 31 31 H 1.09007 * 109.46608 * 306.04149 * 11 10 9 32 32 H 0.97001 * 120.00167 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.47095 * 300.00169 * 15 14 12 34 34 H 1.08999 * 109.46734 * 60.00127 * 15 14 12 35 35 H 1.07998 * 126.58367 * 0.03995 * 17 16 15 36 36 H 1.08004 * 126.57772 * 179.97438 * 18 17 16 37 37 H 1.07997 * 125.78873 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47043 * 53.95437 * 21 10 9 39 39 H 1.09001 * 109.47354 * 173.95499 * 21 10 9 40 40 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 41 41 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5360 -4.8808 -0.3313 12 6 1.0426 -4.8309 -1.7543 13 8 1.2305 -3.8393 -2.4270 14 7 0.3924 -5.8882 -2.2795 15 6 -0.0878 -5.8395 -3.6628 16 6 -0.7756 -7.1368 -4.0017 17 6 -2.0840 -7.4006 -3.8345 18 6 -2.2948 -8.7260 -4.2795 19 6 -1.1025 -9.1930 -4.6915 20 8 -0.1871 -8.2243 -4.5260 21 6 2.9042 -3.7111 1.2881 22 6 3.7743 -2.4955 1.4790 23 6 3.4000 -1.3445 2.0660 24 6 4.5209 -0.4835 2.0308 25 6 5.5131 -1.1599 1.4249 26 8 5.0567 -2.3798 1.0970 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5572 0.8897 30 1 2.2407 -5.7048 -0.2197 31 1 0.6914 -5.0314 0.3411 32 1 0.2417 -6.6811 -1.7415 33 1 -0.7924 -5.0153 -3.7740 34 1 0.7566 -5.6890 -4.3354 35 1 -2.8304 -6.7288 -3.4368 36 1 -3.2330 -9.2610 -4.2864 37 1 -0.9143 -10.1780 -5.0921 38 1 2.1730 -3.7648 2.0948 39 1 3.5245 -4.6073 1.2998 40 1 2.4299 -1.1213 2.4847 41 1 4.5707 0.5242 2.4164 42 1 6.5092 -0.7869 1.2374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:52 Heat of formation + Delta-G solvation = 32.315898 kcal Electronic energy + Delta-G solvation = -26360.988691 eV Core-core repulsion = 22504.211288 eV Total energy + Delta-G solvation = -3856.777403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78737 -41.69118 -39.35033 -36.45520 -34.71772 -33.15492 -32.64215 -31.88819 -30.83228 -29.86918 -27.85688 -26.77779 -25.32549 -23.45563 -21.97003 -21.46828 -20.78182 -20.74566 -19.99429 -19.34631 -17.81729 -16.81557 -16.72508 -16.36367 -16.15928 -15.56079 -15.26475 -14.90582 -14.53915 -14.25704 -14.03746 -13.92538 -13.56253 -13.13871 -13.04537 -12.95835 -12.84712 -12.33035 -12.11893 -11.97733 -11.87485 -11.75403 -11.59431 -10.98253 -10.87832 -10.49960 -10.45172 -10.17299 -9.94078 -9.42364 -9.19762 -8.88057 -8.71496 -8.62056 -8.25574 -7.37476 -7.19641 -5.87569 -3.76104 1.40093 2.33987 2.61291 2.72822 3.12999 3.38008 3.45553 3.49024 3.56535 3.70263 3.90670 4.41062 4.58106 4.80063 4.83148 5.00354 5.17326 5.29661 5.50148 5.52363 5.55452 5.58823 5.63355 5.69598 5.74608 5.81622 5.86395 5.92800 5.98811 6.18563 6.25058 6.51447 6.72957 6.90719 6.96696 6.99733 7.20505 7.27536 7.50973 7.68606 7.93608 8.11066 8.14909 8.23254 8.58434 8.71687 9.22697 9.78137 11.24205 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003092 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.356776 B = 9054.837110 C =10005.658702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.054 3.946 3 Si 0.881 3.119 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.480 4.480 8 H 0.076 0.924 9 C 0.186 3.814 10 N -0.521 5.521 11 C 0.041 3.959 12 C 0.512 3.488 13 O -0.490 6.490 14 N -0.741 5.741 15 C 0.204 3.796 16 C -0.028 4.028 17 C -0.189 4.189 18 C -0.218 4.218 19 C -0.036 4.036 20 O -0.172 6.172 21 C 0.151 3.849 22 C -0.004 4.004 23 C -0.131 4.131 24 C -0.219 4.219 25 C -0.065 4.065 26 O -0.178 6.178 27 H 0.256 0.744 28 H 0.051 0.949 29 H -0.013 1.013 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.203 0.797 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -17.265 -1.991 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.145 4.145 3 Si 0.710 3.290 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.518 4.518 8 H 0.094 0.906 9 C 0.062 3.938 10 N -0.247 5.247 11 C -0.090 4.090 12 C 0.297 3.703 13 O -0.361 6.361 14 N -0.398 5.398 15 C 0.081 3.919 16 C -0.078 4.078 17 C -0.209 4.209 18 C -0.237 4.237 19 C -0.104 4.104 20 O -0.068 6.068 21 C 0.024 3.976 22 C -0.054 4.054 23 C -0.151 4.151 24 C -0.239 4.239 25 C -0.133 4.133 26 O -0.074 6.074 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.004 0.996 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.220 0.780 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.358 -16.511 -3.078 16.799 hybrid contribution -0.845 0.692 0.701 1.298 sum -0.487 -15.819 -2.377 16.004 Atomic orbital electron populations 1.69974 1.05989 1.26150 1.52349 1.24830 0.94566 0.98822 0.96320 0.86663 0.81127 0.84143 0.77096 1.18703 1.21653 1.21409 1.21556 0.94284 0.89302 1.46664 0.90574 1.20012 0.89963 0.87155 0.96715 1.61970 1.31570 1.02342 1.28777 1.21818 0.98708 0.95695 0.92805 1.20716 0.77504 0.82302 0.89767 1.90815 1.53468 1.30552 1.61261 1.46084 1.61067 1.19401 1.13277 1.19514 0.99021 0.89043 0.84342 1.22450 0.92554 0.89371 1.03473 1.21751 0.95953 0.97464 1.05704 1.21885 0.99242 0.96258 1.06283 1.24096 0.87507 0.93849 1.04989 1.84056 1.38540 1.20692 1.63473 1.20143 0.93767 0.92349 0.91365 1.21557 0.82519 0.99253 1.02094 1.21237 0.98406 0.92317 1.03115 1.21631 0.94338 1.00874 1.07046 1.23576 1.00119 0.84414 1.05149 1.83898 1.26189 1.32827 1.64533 0.93432 0.93133 0.99566 0.89014 0.92703 0.76839 0.88341 0.89893 0.83073 0.83333 0.78048 0.92763 0.91142 0.83970 0.85055 0.79553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.88 22.56 28.90 -169.99 -4.91 17.64 16 4 H -0.26 -6.56 6.90 56.52 0.39 -6.17 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.48 -13.48 5.63 -34.44 -0.19 -13.68 16 8 H 0.08 2.18 4.60 -52.49 -0.24 1.94 16 9 C 0.19 4.83 4.29 -4.98 -0.02 4.81 16 10 N -0.52 -11.12 4.30 -238.96 -1.03 -12.15 16 11 C 0.04 0.68 5.45 -4.98 -0.03 0.65 16 12 C 0.51 9.07 7.41 -10.99 -0.08 8.99 16 13 O -0.49 -11.40 14.45 5.55 0.08 -11.32 16 14 N -0.74 -9.74 5.55 -61.47 -0.34 -10.08 16 15 C 0.20 2.57 6.20 -5.19 -0.03 2.54 16 16 C -0.03 -0.32 6.69 -35.63 -0.24 -0.55 16 17 C -0.19 -1.92 10.81 -39.70 -0.43 -2.35 16 18 C -0.22 -1.88 10.91 -39.70 -0.43 -2.32 16 19 C -0.04 -0.30 12.09 29.42 0.36 0.06 16 20 O -0.17 -1.89 10.65 5.71 0.06 -1.83 16 21 C 0.15 2.82 5.49 -4.98 -0.03 2.80 16 22 C 0.00 -0.09 4.77 -35.62 -0.17 -0.26 16 23 C -0.13 -2.83 7.20 -39.70 -0.29 -3.11 16 24 C -0.22 -4.37 9.87 -39.71 -0.39 -4.77 16 25 C -0.06 -1.20 12.02 29.41 0.35 -0.84 16 26 O -0.18 -3.66 10.65 5.68 0.06 -3.60 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.05 1.47 5.80 -51.93 -0.30 1.17 16 29 H -0.01 -0.36 7.98 -51.93 -0.41 -0.77 16 30 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.40 4.08 8.46 -40.82 -0.35 3.74 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 39 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.14 3.23 7.77 -52.49 -0.41 2.82 16 41 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 42 H 0.19 2.65 8.06 -52.48 -0.42 2.22 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -36.08 354.69 -7.20 -43.27 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.48 Total: 5.94 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.72 Total: -6.56 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.63 Total: -48.89 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.20 Total: -16.75 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.91 Total: 17.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.08 -7.20 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.590 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds