Wall clock time and date at job start Tue Mar 31 2020 12:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47200 * 300.00287 * 3 2 1 6 6 H 1.48504 * 109.46964 * 60.00343 * 3 2 1 7 7 C 1.37882 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99890 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46736 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00040 * 193.95638 * 10 9 7 12 12 C 1.50696 * 109.47399 * 66.04221 * 11 10 9 13 13 O 1.21290 * 119.99984 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00148 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99983 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47140 * 180.02562 * 15 14 12 17 17 C 1.34514 * 125.78711 * 89.99974 * 16 15 14 18 18 C 1.41388 * 106.83816 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.84057 * 0.02562 * 18 17 16 20 20 O 1.34302 * 108.42159 * 359.73578 * 19 18 17 21 21 C 1.46899 * 111.00255 * 69.99902 * 10 9 7 22 22 C 1.50703 * 109.47107 * 293.95458 * 21 10 9 23 23 C 1.34515 * 125.79060 * 89.99940 * 22 21 10 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69278 * 22 21 10 27 27 H 0.96999 * 120.00134 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46930 * 60.00374 * 9 7 2 29 29 H 1.08999 * 109.47356 * 299.99533 * 9 7 2 30 30 H 1.08998 * 109.47407 * 186.04713 * 11 10 9 31 31 H 1.09007 * 109.46608 * 306.04149 * 11 10 9 32 32 H 0.97001 * 120.00167 * 0.02562 * 14 12 11 33 33 H 1.09002 * 109.47095 * 300.00169 * 15 14 12 34 34 H 1.08999 * 109.46734 * 60.00127 * 15 14 12 35 35 H 1.07998 * 126.58367 * 0.03995 * 17 16 15 36 36 H 1.08004 * 126.57772 * 179.97438 * 18 17 16 37 37 H 1.07997 * 125.78873 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47043 * 53.95437 * 21 10 9 39 39 H 1.09001 * 109.47354 * 173.95499 * 21 10 9 40 40 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 41 41 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5360 -4.8808 -0.3313 12 6 1.0426 -4.8309 -1.7543 13 8 1.2305 -3.8393 -2.4270 14 7 0.3924 -5.8882 -2.2795 15 6 -0.0878 -5.8395 -3.6628 16 6 -0.7756 -7.1368 -4.0017 17 6 -2.0840 -7.4006 -3.8345 18 6 -2.2948 -8.7260 -4.2795 19 6 -1.1025 -9.1930 -4.6915 20 8 -0.1871 -8.2243 -4.5260 21 6 2.9042 -3.7111 1.2881 22 6 3.7743 -2.4955 1.4790 23 6 3.4000 -1.3445 2.0660 24 6 4.5209 -0.4835 2.0308 25 6 5.5131 -1.1599 1.4249 26 8 5.0567 -2.3798 1.0970 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5572 0.8897 30 1 2.2407 -5.7048 -0.2197 31 1 0.6914 -5.0314 0.3411 32 1 0.2417 -6.6811 -1.7415 33 1 -0.7924 -5.0153 -3.7740 34 1 0.7566 -5.6890 -4.3354 35 1 -2.8304 -6.7288 -3.4368 36 1 -3.2330 -9.2610 -4.2864 37 1 -0.9143 -10.1780 -5.0921 38 1 2.1730 -3.7648 2.0948 39 1 3.5245 -4.6073 1.2998 40 1 2.4299 -1.1213 2.4847 41 1 4.5707 0.5242 2.4164 42 1 6.5092 -0.7869 1.2374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:51 Heat of formation + Delta-G solvation = 5.408668 kcal Electronic energy + Delta-G solvation = -26362.155476 eV Core-core repulsion = 22504.211288 eV Total energy + Delta-G solvation = -3857.944188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.54387 -43.25035 -40.76331 -38.03872 -35.99451 -34.65958 -33.92166 -33.58761 -32.00107 -31.17134 -29.65988 -28.22280 -26.46445 -25.28452 -23.15981 -22.69930 -22.35484 -21.62164 -21.28319 -20.92875 -18.82138 -18.65449 -18.11806 -17.62491 -17.24565 -16.92836 -16.55806 -16.34440 -16.30731 -15.65212 -15.57348 -15.32306 -14.95791 -14.47782 -14.34652 -14.00566 -13.85770 -13.76990 -13.54115 -13.53164 -13.30877 -13.23520 -13.02376 -12.89515 -12.53828 -12.41819 -12.32217 -11.83063 -11.28252 -10.95588 -10.78021 -10.54736 -10.19496 -10.11730 -9.52365 -9.04711 -8.84071 -8.08217 -6.00607 0.61557 1.08607 1.34684 1.39530 1.52462 1.62366 1.75158 1.93458 2.03947 2.38489 2.46220 2.48246 3.29009 3.44771 3.62265 3.94681 4.10021 4.11291 4.12943 4.32449 4.35456 4.39510 4.44869 4.47904 4.55071 4.58268 4.67746 4.88552 5.00615 5.13454 5.18221 5.18644 5.30862 5.35903 5.42245 5.53061 5.56674 5.81462 5.90352 6.15743 6.16452 6.33473 6.48987 6.56552 6.70771 7.02825 7.38323 7.56515 9.04114 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.003092 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.356776 B = 9054.837110 C =10005.658702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.003 3.997 3 Si 0.933 3.067 4 H -0.250 1.250 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.473 4.473 8 H 0.073 0.927 9 C 0.205 3.795 10 N -0.539 5.539 11 C 0.040 3.960 12 C 0.509 3.491 13 O -0.556 6.556 14 N -0.719 5.719 15 C 0.207 3.793 16 C -0.049 4.049 17 C -0.189 4.189 18 C -0.229 4.229 19 C -0.025 4.025 20 O -0.188 6.188 21 C 0.149 3.851 22 C -0.016 4.016 23 C -0.153 4.153 24 C -0.241 4.241 25 C -0.052 4.052 26 O -0.186 6.186 27 H 0.255 0.745 28 H 0.015 0.985 29 H -0.034 1.034 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.144 0.856 42 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -19.581 -1.833 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.759 3.241 4 H -0.173 1.173 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.512 4.512 8 H 0.091 0.909 9 C 0.079 3.921 10 N -0.265 5.265 11 C -0.091 4.091 12 C 0.296 3.704 13 O -0.432 6.432 14 N -0.375 5.375 15 C 0.084 3.916 16 C -0.099 4.099 17 C -0.209 4.209 18 C -0.248 4.248 19 C -0.093 4.093 20 O -0.084 6.084 21 C 0.022 3.978 22 C -0.066 4.066 23 C -0.173 4.173 24 C -0.260 4.260 25 C -0.119 4.119 26 O -0.082 6.082 27 H 0.064 0.936 28 H 0.033 0.967 29 H -0.017 1.017 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.252 0.748 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.190 0.810 37 H 0.258 0.742 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.652 -18.900 -2.896 19.192 hybrid contribution -1.250 1.252 0.636 1.880 sum 0.403 -17.649 -2.260 17.797 Atomic orbital electron populations 1.70090 1.07400 1.26652 1.54337 1.25530 0.95216 1.01932 0.96604 0.85849 0.80701 0.80647 0.76857 1.17328 1.22422 1.20543 1.21782 0.94104 0.90358 1.44955 0.90944 1.19541 0.89951 0.88668 0.93892 1.61734 1.30990 1.03170 1.30557 1.22006 1.00428 0.94607 0.92041 1.21065 0.77103 0.82105 0.90134 1.90789 1.56441 1.33137 1.62851 1.45873 1.59147 1.18802 1.13672 1.19360 0.98456 0.90131 0.83672 1.22062 0.92771 0.89282 1.05749 1.21985 0.95568 0.98454 1.04897 1.22208 1.00568 0.95609 1.06370 1.24939 0.86840 0.94349 1.03149 1.84042 1.39554 1.21079 1.63766 1.20336 0.93947 0.93187 0.90361 1.21952 0.82972 0.99840 1.01823 1.21207 0.98243 0.93635 1.04262 1.21882 0.94306 1.01662 1.08147 1.24419 1.01397 0.83246 1.02861 1.83913 1.25933 1.33813 1.64576 0.93641 0.96657 1.01662 0.84440 0.90594 0.74811 0.89483 0.90934 0.82708 0.81036 0.74191 0.91818 0.87154 0.86227 0.83769 0.75142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.29 21.45 0.28 -58.86 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.93 46.98 28.90 68.60 1.98 48.96 16 4 H -0.25 -11.91 6.90 99.48 0.69 -11.22 16 5 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.47 -27.19 5.63 25.60 0.14 -27.05 16 8 H 0.07 4.17 4.60 -2.91 -0.01 4.16 16 9 C 0.21 10.99 4.29 85.56 0.37 11.36 16 10 N -0.54 -22.72 4.30 -909.94 -3.91 -26.63 16 11 C 0.04 1.24 5.45 85.56 0.47 1.70 16 12 C 0.51 18.12 7.41 87.66 0.65 18.77 16 13 O -0.56 -26.93 14.45 -3.06 -0.04 -26.98 16 14 N -0.72 -18.60 5.55 -466.78 -2.59 -21.19 16 15 C 0.21 5.36 6.20 85.63 0.53 5.89 16 16 C -0.05 -1.06 6.69 24.83 0.17 -0.90 16 17 C -0.19 -3.64 10.81 22.19 0.24 -3.40 16 18 C -0.23 -3.40 10.91 22.19 0.24 -3.16 16 19 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 20 O -0.19 -3.85 10.65 -2.50 -0.03 -3.88 16 21 C 0.15 5.30 5.49 85.56 0.47 5.77 16 22 C -0.02 -0.65 4.77 24.83 0.12 -0.53 16 23 C -0.15 -6.62 7.20 22.19 0.16 -6.46 16 24 C -0.24 -9.26 9.87 22.19 0.22 -9.04 16 25 C -0.05 -1.78 12.02 66.97 0.80 -0.98 16 26 O -0.19 -7.25 10.65 -2.58 -0.03 -7.28 16 27 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.02 0.94 5.80 -2.39 -0.01 0.93 16 29 H -0.03 -1.92 7.98 -2.39 -0.02 -1.94 16 30 H 0.14 3.02 7.93 -2.39 -0.02 3.00 16 31 H 0.08 2.09 8.12 -2.38 -0.02 2.08 16 32 H 0.42 7.84 8.46 -92.71 -0.78 7.05 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 39 H 0.11 3.03 7.93 -2.39 -0.02 3.01 16 40 H 0.12 5.64 7.77 -2.91 -0.02 5.62 16 41 H 0.14 5.04 8.06 -2.91 -0.02 5.01 16 42 H 0.23 5.55 8.06 -2.91 -0.02 5.53 16 Total: -1.00 -82.16 354.69 1.76 -80.40 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.24 Total: 22.38 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.85 Total: -6.92 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -6.22 Total: -106.68 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.10 Total: -38.13 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.98 Total: 48.96 kcal Total: -82.16 1.76 -80.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.804 kcal (2) G-P(sol) polarization free energy of solvation -82.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds