Wall clock time and date at job start Tue Mar 31 2020 13:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39686 * 120.07413 * 2 1 4 4 C 1.47701 * 120.15654 * 0.02562 * 3 2 1 5 5 O 1.21476 * 119.99691 * 307.85882 * 4 3 2 6 6 N 1.34774 * 120.00312 * 127.85769 * 4 3 2 7 7 C 1.33331 * 120.00147 * 174.76654 * 6 4 3 8 8 H 1.07994 * 120.00311 * 143.47408 * 7 6 4 9 9 C 1.46788 * 119.99666 * 323.47632 * 7 6 4 10 10 N 1.29316 * 119.99682 * 159.64225 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 339.63479 * 9 7 6 12 12 H 1.48498 * 109.46991 * 94.69120 * 11 9 7 13 13 H 1.48506 * 109.47192 * 214.68942 * 11 9 7 14 14 H 1.48500 * 109.47465 * 334.68816 * 11 9 7 15 15 C 1.46500 * 119.99780 * 354.76413 * 6 4 3 16 16 C 1.54268 * 110.03275 * 235.01246 * 15 6 4 17 17 C 1.54964 * 104.16166 * 217.14113 * 16 15 6 18 18 C 1.54888 * 102.77766 * 37.88302 * 17 16 15 19 19 C 1.53880 * 110.03055 * 117.79730 * 15 6 4 20 20 C 1.39643 * 119.69367 * 180.22955 * 3 2 1 21 21 C 1.37952 * 119.84775 * 359.52193 * 20 3 2 22 22 C 1.38363 * 120.14640 * 0.27350 * 21 20 3 23 23 C 1.37903 * 120.08121 * 179.77346 * 2 1 3 24 24 N 1.48019 * 119.92222 * 0.02562 * 23 2 1 25 25 O 1.31699 * 119.99918 * 172.91865 * 24 23 2 26 26 O 1.31699 * 119.99880 * 352.91875 * 24 23 2 27 27 H 1.08999 * 109.47236 * 262.94378 * 1 2 3 28 28 H 1.09002 * 109.47587 * 22.94710 * 1 2 3 29 29 H 1.09005 * 109.47146 * 142.94248 * 1 2 3 30 30 H 0.97003 * 119.99654 * 179.97438 * 10 9 7 31 31 H 1.09000 * 110.02171 * 356.40719 * 15 6 4 32 32 H 1.08997 * 110.48648 * 335.78700 * 16 15 6 33 33 H 1.08997 * 110.48808 * 98.42901 * 16 15 6 34 34 H 1.09006 * 110.71871 * 279.57451 * 17 16 15 35 35 H 1.08998 * 110.92472 * 156.29606 * 17 16 15 36 36 H 1.09004 * 110.49180 * 203.40745 * 18 17 16 37 37 H 1.09011 * 110.59766 * 80.82259 * 18 17 16 38 38 H 1.09004 * 110.03271 * 238.56885 * 19 15 6 39 39 H 1.09001 * 110.02865 * 359.94819 * 19 15 6 40 40 H 1.08003 * 120.07732 * 179.79779 * 20 3 2 41 41 H 1.07992 * 119.92697 * 180.25375 * 21 20 3 42 42 H 1.08003 * 119.83990 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2088 0.0000 4 6 1.4736 2.4909 0.0006 5 8 0.6113 2.6977 -0.8297 6 7 1.7611 3.4313 0.9222 7 6 1.1746 4.6271 0.8599 8 1 0.8979 5.1408 1.7686 9 6 0.9049 5.2452 -0.4439 10 7 0.0147 6.1776 -0.5456 11 14 1.8479 4.6850 -1.9560 12 1 1.0617 3.6501 -2.6743 13 1 2.0767 5.8451 -2.8546 14 1 3.1548 4.1148 -1.5414 15 6 2.7181 3.1397 1.9924 16 6 2.0690 3.4008 3.3673 17 6 3.2167 3.9962 4.2215 18 6 3.9723 4.8886 3.2057 19 6 3.9280 4.0849 1.8897 20 6 3.6034 1.1995 -0.0049 21 6 4.2820 -0.0015 0.0004 22 6 3.5822 -1.1951 0.0047 23 6 2.1982 -1.1933 0.0047 24 7 1.4582 -2.4752 0.0092 25 8 2.1093 -3.6119 -0.1269 26 8 0.1487 -2.4791 0.1493 27 1 -0.3634 -0.1262 1.0199 28 1 -0.3634 0.9463 -0.4007 29 1 -0.3634 -0.8201 -0.6193 30 1 -0.1633 6.5863 -1.4071 31 1 3.0476 2.1028 1.9260 32 1 1.2524 4.1167 3.2739 33 1 1.7118 2.4681 3.8039 34 1 3.8659 3.2063 4.5994 35 1 2.8212 4.5947 5.0421 36 1 5.0033 5.0413 3.5249 37 1 3.4655 5.8461 3.0852 38 1 4.8448 3.5067 1.7742 39 1 3.8035 4.7600 1.0430 40 1 4.1508 2.1305 -0.0082 41 1 5.3619 -0.0101 0.0008 42 1 4.1185 -2.1325 0.0083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:48 Heat of formation + Delta-G solvation = 36.898230 kcal Electronic energy + Delta-G solvation = -28004.266849 eV Core-core repulsion = 24147.688151 eV Total energy + Delta-G solvation = -3856.578698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.72762 -39.32901 -37.93510 -37.09635 -34.54715 -33.89445 -32.69961 -32.57301 -31.61488 -28.39114 -27.92320 -27.40545 -26.02040 -25.10805 -22.76854 -21.83100 -20.65634 -20.35995 -19.47013 -18.56448 -17.91748 -16.84995 -16.31720 -16.14249 -16.05840 -15.63055 -15.47292 -14.93589 -14.25441 -14.20897 -13.67503 -13.54240 -13.31494 -13.07116 -12.90635 -12.50111 -12.43326 -12.15699 -12.08822 -11.90797 -11.57296 -11.28635 -11.13227 -11.06230 -10.81486 -10.76858 -10.64813 -10.40628 -10.30501 -10.22975 -10.19467 -10.05346 -9.42493 -9.03387 -8.81659 -8.64282 -8.00205 -6.61993 -3.98248 -0.56301 0.85149 1.16251 1.24235 2.95840 3.21364 3.25649 3.47530 3.69939 4.08686 4.32588 4.42572 4.53085 4.76438 4.78639 4.86245 4.90744 4.95807 5.01619 5.15342 5.27484 5.56232 5.57711 5.61511 5.75000 5.80394 5.87552 5.88882 5.92618 5.94614 5.95889 6.04771 6.16938 6.18031 6.28899 6.33062 6.42804 6.54476 6.65699 6.68461 6.72534 6.95190 7.25497 7.72464 8.36712 8.75931 9.02028 9.67657 10.35605 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.005685 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.251779 B = 4924.463248 C = 5865.547493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.025 3.975 3 C -0.092 4.092 4 C 0.431 3.569 5 O -0.547 6.547 6 N -0.396 5.396 7 C -0.366 4.366 8 H 0.103 0.897 9 C 0.101 3.899 10 N -0.808 5.808 11 Si 0.922 3.078 12 H -0.248 1.248 13 H -0.309 1.309 14 H -0.278 1.278 15 C 0.113 3.887 16 C -0.131 4.131 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.126 4.126 22 C -0.062 4.062 23 C -0.013 4.013 24 N -0.009 5.009 25 O -0.197 6.197 26 O -0.166 6.166 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.285 0.715 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.309 -6.197 5.032 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 C -0.096 4.096 4 C 0.226 3.774 5 O -0.435 6.435 6 N -0.110 5.110 7 C -0.493 4.493 8 H 0.121 0.879 9 C -0.119 4.119 10 N -0.437 5.437 11 Si 0.753 3.247 12 H -0.173 1.173 13 H -0.239 1.239 14 H -0.204 1.204 15 C 0.009 3.991 16 C -0.169 4.169 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.170 4.170 20 C -0.075 4.075 21 C -0.145 4.145 22 C -0.082 4.082 23 C -0.100 4.100 24 N 0.466 4.534 25 O -0.384 6.384 26 O -0.360 6.360 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.082 -5.396 4.572 12.316 hybrid contribution 0.372 -0.615 -0.688 0.994 sum 10.454 -6.011 3.885 12.669 Atomic orbital electron populations 1.21627 0.87922 1.06984 1.04012 1.19941 0.98655 0.88973 0.90186 1.20300 0.93459 0.94590 1.01291 1.17633 0.87589 0.82482 0.89743 1.90530 1.34933 1.78118 1.39923 1.42596 1.34085 1.10880 1.23408 1.19664 1.41732 0.94328 0.93570 0.87918 1.26964 0.93247 0.92337 0.99381 1.68731 1.25027 1.22314 1.27593 0.86208 0.79366 0.77725 0.81419 1.17319 1.23861 1.20401 1.22104 0.89775 0.98201 0.88987 1.22696 0.98976 1.01235 0.93998 1.22445 0.97192 0.98710 0.97572 1.22256 0.99388 0.99184 0.94603 1.22481 0.96321 0.98712 0.99505 1.21943 0.93490 0.99354 0.92667 1.21048 1.00750 0.90516 1.02142 1.21029 0.90562 1.00734 0.95826 1.20114 0.91691 0.80954 1.17216 1.50402 1.02935 1.03976 0.96108 1.96235 1.68889 1.16959 1.56353 1.96215 0.89913 1.95641 1.54212 0.89598 0.87406 0.88743 0.90380 0.90586 0.89364 0.92349 0.92162 0.91834 0.92442 0.91059 0.92567 0.89847 0.83861 0.83483 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.28 36.01 0.30 -2.38 16 2 C 0.03 0.44 5.91 -104.20 -0.62 -0.17 16 3 C -0.09 -1.66 4.69 -104.97 -0.49 -2.16 16 4 C 0.43 9.55 4.63 -12.40 -0.06 9.49 16 5 O -0.55 -14.16 10.04 5.39 0.05 -14.10 16 6 N -0.40 -8.44 2.20 -106.11 -0.23 -8.67 16 7 C -0.37 -9.02 8.61 -13.45 -0.12 -9.14 16 8 H 0.10 2.63 6.56 -52.49 -0.34 2.29 16 9 C 0.10 2.66 4.98 -15.16 -0.08 2.58 16 10 N -0.81 -21.95 13.88 56.00 0.78 -21.18 16 11 Si 0.92 22.34 24.73 -169.99 -4.20 18.14 16 12 H -0.25 -6.46 6.28 56.52 0.35 -6.11 16 13 H -0.31 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.11 1.89 2.48 -66.81 -0.17 1.72 16 16 C -0.13 -2.02 6.40 -25.03 -0.16 -2.19 16 17 C -0.12 -1.52 6.91 -24.70 -0.17 -1.69 16 18 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 19 C -0.13 -1.97 5.73 -25.61 -0.15 -2.11 16 20 C -0.06 -0.80 7.60 -39.16 -0.30 -1.10 16 21 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 22 C -0.06 -0.78 9.58 -39.48 -0.38 -1.16 16 23 C -0.01 -0.20 6.85 -80.01 -0.55 -0.75 16 24 N -0.01 -0.15 4.98 33.93 0.17 0.02 16 25 O -0.20 -3.37 19.16 -31.57 -0.60 -3.98 16 26 O -0.17 -2.98 15.95 -31.57 -0.50 -3.48 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.11 2.22 5.39 -51.93 -0.28 1.94 16 29 H 0.09 1.64 5.81 -51.93 -0.30 1.34 16 30 H 0.28 7.22 8.26 -40.82 -0.34 6.88 16 31 H 0.08 1.16 5.07 -51.93 -0.26 0.90 16 32 H 0.09 1.58 6.12 -51.93 -0.32 1.27 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 39 H 0.08 1.47 7.44 -51.93 -0.39 1.08 16 40 H 0.14 1.97 7.00 -52.48 -0.37 1.61 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.15 1.58 7.59 -52.48 -0.40 1.18 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -29.29 335.13 -8.20 -37.49 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.21 Total: 3.29 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.49 Total: -12.58 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.71 Total: -29.83 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.05 Total: -21.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.20 Total: 18.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.29 -8.20 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.391 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds