Wall clock time and date at job start Tue Mar 31 2020 13:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39686 * 120.07413 * 2 1 4 4 C 1.47701 * 120.15654 * 0.02562 * 3 2 1 5 5 O 1.21476 * 119.99691 * 307.85882 * 4 3 2 6 6 N 1.34774 * 120.00312 * 127.85769 * 4 3 2 7 7 C 1.33331 * 120.00147 * 174.76654 * 6 4 3 8 8 H 1.07994 * 120.00311 * 143.47408 * 7 6 4 9 9 C 1.46788 * 119.99666 * 323.47632 * 7 6 4 10 10 N 1.29316 * 119.99682 * 159.64225 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 339.63479 * 9 7 6 12 12 H 1.48498 * 109.46991 * 94.69120 * 11 9 7 13 13 H 1.48506 * 109.47192 * 214.68942 * 11 9 7 14 14 H 1.48500 * 109.47465 * 334.68816 * 11 9 7 15 15 C 1.46500 * 119.99780 * 354.76413 * 6 4 3 16 16 C 1.54268 * 110.03275 * 235.01246 * 15 6 4 17 17 C 1.54964 * 104.16166 * 217.14113 * 16 15 6 18 18 C 1.54888 * 102.77766 * 37.88302 * 17 16 15 19 19 C 1.53880 * 110.03055 * 117.79730 * 15 6 4 20 20 C 1.39643 * 119.69367 * 180.22955 * 3 2 1 21 21 C 1.37952 * 119.84775 * 359.52193 * 20 3 2 22 22 C 1.38363 * 120.14640 * 0.27350 * 21 20 3 23 23 C 1.37903 * 120.08121 * 179.77346 * 2 1 3 24 24 N 1.48019 * 119.92222 * 0.02562 * 23 2 1 25 25 O 1.31699 * 119.99918 * 172.91865 * 24 23 2 26 26 O 1.31699 * 119.99880 * 352.91875 * 24 23 2 27 27 H 1.08999 * 109.47236 * 262.94378 * 1 2 3 28 28 H 1.09002 * 109.47587 * 22.94710 * 1 2 3 29 29 H 1.09005 * 109.47146 * 142.94248 * 1 2 3 30 30 H 0.97003 * 119.99654 * 179.97438 * 10 9 7 31 31 H 1.09000 * 110.02171 * 356.40719 * 15 6 4 32 32 H 1.08997 * 110.48648 * 335.78700 * 16 15 6 33 33 H 1.08997 * 110.48808 * 98.42901 * 16 15 6 34 34 H 1.09006 * 110.71871 * 279.57451 * 17 16 15 35 35 H 1.08998 * 110.92472 * 156.29606 * 17 16 15 36 36 H 1.09004 * 110.49180 * 203.40745 * 18 17 16 37 37 H 1.09011 * 110.59766 * 80.82259 * 18 17 16 38 38 H 1.09004 * 110.03271 * 238.56885 * 19 15 6 39 39 H 1.09001 * 110.02865 * 359.94819 * 19 15 6 40 40 H 1.08003 * 120.07732 * 179.79779 * 20 3 2 41 41 H 1.07992 * 119.92697 * 180.25375 * 21 20 3 42 42 H 1.08003 * 119.83990 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2088 0.0000 4 6 1.4736 2.4909 0.0006 5 8 0.6113 2.6977 -0.8297 6 7 1.7611 3.4313 0.9222 7 6 1.1746 4.6271 0.8599 8 1 0.8979 5.1408 1.7686 9 6 0.9049 5.2452 -0.4439 10 7 0.0147 6.1776 -0.5456 11 14 1.8479 4.6850 -1.9560 12 1 1.0617 3.6501 -2.6743 13 1 2.0767 5.8451 -2.8546 14 1 3.1548 4.1148 -1.5414 15 6 2.7181 3.1397 1.9924 16 6 2.0690 3.4008 3.3673 17 6 3.2167 3.9962 4.2215 18 6 3.9723 4.8886 3.2057 19 6 3.9280 4.0849 1.8897 20 6 3.6034 1.1995 -0.0049 21 6 4.2820 -0.0015 0.0004 22 6 3.5822 -1.1951 0.0047 23 6 2.1982 -1.1933 0.0047 24 7 1.4582 -2.4752 0.0092 25 8 2.1093 -3.6119 -0.1269 26 8 0.1487 -2.4791 0.1493 27 1 -0.3634 -0.1262 1.0199 28 1 -0.3634 0.9463 -0.4007 29 1 -0.3634 -0.8201 -0.6193 30 1 -0.1633 6.5863 -1.4071 31 1 3.0476 2.1028 1.9260 32 1 1.2524 4.1167 3.2739 33 1 1.7118 2.4681 3.8039 34 1 3.8659 3.2063 4.5994 35 1 2.8212 4.5947 5.0421 36 1 5.0033 5.0413 3.5249 37 1 3.4655 5.8461 3.0852 38 1 4.8448 3.5067 1.7742 39 1 3.8035 4.7600 1.0430 40 1 4.1508 2.1305 -0.0082 41 1 5.3619 -0.0101 0.0008 42 1 4.1185 -2.1325 0.0083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:47 Heat of formation + Delta-G solvation = 20.117412 kcal Electronic energy + Delta-G solvation = -28004.994520 eV Core-core repulsion = 24147.688151 eV Total energy + Delta-G solvation = -3857.306369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.12375 -40.74420 -39.21398 -38.57199 -35.88244 -35.50453 -34.39630 -33.92434 -32.99128 -29.54555 -29.29057 -28.70301 -27.33375 -26.70764 -24.22489 -23.10581 -22.05975 -21.53614 -20.92706 -19.97959 -19.19537 -18.43958 -17.74691 -17.47179 -17.29092 -17.15341 -16.86622 -16.28666 -15.73232 -15.55585 -15.33047 -14.88783 -14.73118 -14.60633 -14.15965 -14.11044 -13.87408 -13.56066 -13.34098 -13.25017 -12.99373 -12.72466 -12.50982 -12.49257 -12.22127 -11.99837 -11.88978 -11.86741 -11.85229 -11.60051 -11.55236 -11.30606 -10.90233 -10.66582 -10.43012 -10.13851 -9.76147 -8.56694 -5.93655 -1.86285 -0.36287 -0.05271 -0.02036 1.14590 1.27526 1.47547 1.75874 2.16225 2.37353 2.59039 2.96024 3.24457 3.29209 3.53791 3.66550 3.73733 3.80449 3.83830 3.90725 4.14177 4.33667 4.37422 4.46865 4.49577 4.56695 4.63376 4.69547 4.71904 4.75896 4.88218 4.90694 5.02274 5.03994 5.09166 5.14157 5.27850 5.33848 5.37117 5.40455 5.50419 5.58603 5.59358 5.90004 6.52181 6.94888 7.25703 7.91111 8.45801 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.005685 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.251779 B = 4924.463248 C = 5865.547493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.010 3.990 3 C -0.120 4.120 4 C 0.440 3.560 5 O -0.592 6.592 6 N -0.407 5.407 7 C -0.372 4.372 8 H 0.077 0.923 9 C 0.060 3.940 10 N -0.859 5.859 11 Si 0.962 3.038 12 H -0.283 1.283 13 H -0.305 1.305 14 H -0.251 1.251 15 C 0.109 3.891 16 C -0.135 4.135 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.040 4.040 21 C -0.096 4.096 22 C -0.031 4.031 23 C -0.024 4.024 24 N -0.008 5.008 25 O -0.170 6.170 26 O -0.215 6.215 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.283 0.717 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.159 0.841 41 H 0.209 0.791 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 -9.463 6.093 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.007 3.993 3 C -0.125 4.125 4 C 0.233 3.767 5 O -0.482 6.482 6 N -0.122 5.122 7 C -0.500 4.500 8 H 0.095 0.905 9 C -0.155 4.155 10 N -0.490 5.490 11 Si 0.792 3.208 12 H -0.210 1.210 13 H -0.235 1.235 14 H -0.174 1.174 15 C 0.006 3.994 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.169 4.169 20 C -0.060 4.060 21 C -0.113 4.113 22 C -0.050 4.050 23 C -0.111 4.111 24 N 0.464 4.536 25 O -0.367 6.367 26 O -0.397 6.397 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.176 0.824 41 H 0.226 0.774 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 15.639 -8.615 5.679 18.737 hybrid contribution -1.216 0.035 -0.978 1.561 sum 14.424 -8.580 4.701 17.429 Atomic orbital electron populations 1.21449 0.89548 1.04911 1.03987 1.19781 0.97940 0.89923 0.91623 1.19951 0.95205 0.92253 1.05057 1.18372 0.86502 0.83765 0.88037 1.90505 1.36499 1.79488 1.41661 1.42707 1.35326 1.09746 1.24391 1.19337 1.42846 0.95657 0.92180 0.90544 1.27515 0.93933 0.92702 1.01345 1.68811 1.27517 1.24883 1.27828 0.85552 0.79396 0.76478 0.79414 1.21025 1.23511 1.17431 1.22413 0.89588 0.99907 0.87484 1.22696 0.99185 1.00839 0.94627 1.22422 0.96056 0.99275 0.96938 1.22251 1.01052 0.97848 0.94111 1.22504 0.96930 0.98365 0.99082 1.22248 0.91477 1.01782 0.90449 1.21658 1.03260 0.87963 0.98467 1.21672 0.88746 1.03053 0.91569 1.20307 0.92887 0.79643 1.18270 1.50591 1.02990 1.04341 0.95685 1.96203 1.68656 1.17456 1.54372 1.96245 0.90388 1.95778 1.57264 0.89431 0.90870 0.88655 0.90571 0.88320 0.93288 0.91506 0.89037 0.91271 0.89155 0.93738 0.88370 0.93002 0.82393 0.77406 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.28 71.24 0.59 -4.77 16 2 C 0.01 0.34 5.91 -19.59 -0.12 0.23 16 3 C -0.12 -4.13 4.69 -20.09 -0.09 -4.22 16 4 C 0.44 19.79 4.63 86.74 0.40 20.19 16 5 O -0.59 -32.31 10.04 -3.64 -0.04 -32.35 16 6 N -0.41 -17.75 2.20 -607.94 -1.34 -19.09 16 7 C -0.37 -19.55 8.61 86.70 0.75 -18.80 16 8 H 0.08 4.31 6.56 -2.91 -0.02 4.29 16 9 C 0.06 3.34 4.98 87.30 0.43 3.77 16 10 N -0.86 -50.41 13.88 23.26 0.32 -50.08 16 11 Si 0.96 47.80 24.73 68.60 1.70 49.50 16 12 H -0.28 -15.52 6.28 99.48 0.62 -14.89 16 13 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 14 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.11 3.45 2.48 45.72 0.11 3.56 16 16 C -0.14 -4.12 6.40 31.70 0.20 -3.92 16 17 C -0.11 -2.43 6.91 31.91 0.22 -2.21 16 18 C -0.11 -2.75 6.83 31.67 0.22 -2.53 16 19 C -0.13 -3.52 5.73 31.32 0.18 -3.34 16 20 C -0.04 -0.95 7.60 22.54 0.17 -0.78 16 21 C -0.10 -1.37 10.03 22.23 0.22 -1.15 16 22 C -0.03 -0.57 9.58 22.34 0.21 -0.35 16 23 C -0.02 -0.67 6.85 36.33 0.25 -0.42 16 24 N -0.01 -0.27 4.98 -46.56 -0.23 -0.50 16 25 O -0.17 -5.12 19.16 3.52 0.07 -5.05 16 26 O -0.21 -7.69 15.95 3.52 0.06 -7.63 16 27 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.07 3.26 5.39 -2.39 -0.01 3.24 16 29 H 0.10 3.49 5.81 -2.38 -0.01 3.48 16 30 H 0.28 15.60 8.26 -92.71 -0.77 14.83 16 31 H 0.10 2.63 5.07 -2.39 -0.01 2.62 16 32 H 0.05 1.88 6.12 -2.39 -0.01 1.86 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.10 1.81 8.04 -2.39 -0.02 1.79 16 39 H 0.05 1.76 7.44 -2.39 -0.02 1.74 16 40 H 0.16 3.36 7.00 -2.91 -0.02 3.34 16 41 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.19 2.24 7.59 -2.91 -0.02 2.22 16 Total: -1.00 -73.49 335.13 5.27 -68.22 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.98 Total: 11.74 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 3.75 Total: -14.75 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.25 Total: -69.67 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: 0.09 Total: -45.03 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.70 Total: 49.50 kcal Total: -73.49 5.27 -68.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.340 kcal (2) G-P(sol) polarization free energy of solvation -73.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds